View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0134_2D_low_23 (Length: 357)
Name: NF0134_2D_low_23
Description: NF0134_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0134_2D_low_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 45271177 - 45270840
Alignment:
| Q |
1 |
ccaaggatggtagcggccaatttaaaaccatccaggctgctcttgccgcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgt |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
45271177 |
ccaatgatggtagcggccaatttaaaaccatccaggctgctcttgcctcttaccctaagggaaacaaagacagatatgttatctacgttaaggccggtgt |
45271078 |
T |
|
| Q |
101 |
ctatgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccctgcaaaaaccattgtcactggtagtaagaaccaaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
45271077 |
ctatgacgaatacatcactgtccccaaggaggctgttaacattcttatgtatggtgatggccctgcaaagaccattgtcactggtagaaagaaccaaatg |
45270978 |
T |
|
| Q |
201 |
gccggtaccaatatacagaacagtgccccctttggtacgtaattcagttattatcgatcaaagcttttttattttatttaattaattgtgtaccttatga |
300 |
Q |
| |
|
||||||||||| | |||||||| |||| ||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45270977 |
gccggtaccaacacacagaacactgccaccttttgtacgtaattcagtta-tatcgatcaaagc--ttttattttatttaattaattgtgtaccttatga |
45270881 |
T |
|
| Q |
301 |
atgaagagagagtagatgtgaaatagtagcatcactctcaa |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45270880 |
atgaagagagagtagatgtgaaatagtagcatcactctcaa |
45270840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 45282951 - 45282612
Alignment:
| Q |
1 |
ccaaggatggtagcggccaatttaaaaccatccaggctgctcttgccgcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45282951 |
ccaaggatggtagcggccaatttaaaaccatccaggctgctcttgcctcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgt |
45282852 |
T |
|
| Q |
101 |
ctatgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccctgcaaaaaccattgtcactggtagtaagaaccaaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| | |
|
|
| T |
45282851 |
ctatgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccctgcaaggaccattgtcactggtagaaagagctttgct |
45282752 |
T |
|
| Q |
201 |
gccggtaccaatatacagaacagtgccccctttggtacgtaattcagttattatcgatcaaagcttttttattttatttaattaattgtgtaccttatga |
300 |
Q |
| |
|
|| ||| ||| | | | | ||| |||| ||||| ||||||| |||| |||||||||| |||||||||||||||||||||||| | || ||||||| |
|
|
| T |
45282751 |
gctggtgtcaagaccatgcaaaccgccaccttcggtacttaattcaattatcatcgatcaaaacttttttattttatttaattaattattta-cttatga |
45282653 |
T |
|
| Q |
301 |
atgaagagagagtagatgtgaaatagtagcatcactctcaa |
341 |
Q |
| |
|
||||||| |||||| ||| |||| ||| ||||||||||||| |
|
|
| T |
45282652 |
atgaagaaagagtatatgagaaaaagtggcatcactctcaa |
45282612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 45274710 - 45274369
Alignment:
| Q |
1 |
ccaaggatggtagcggccaatttaaaaccatccaggctgctcttgccgcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgt |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||| |||||||||||||||| ||||| |
|
|
| T |
45274710 |
ccaatgatggtagcggccaatttaaaaccatccaggctgctcttgcctcttatcctaagggaaacaaaggcaggtattttatctacgttaaggctggtgt |
45274611 |
T |
|
| Q |
101 |
ctatgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccctgcaaaaaccattgtcactggtagtaagaaccaaaac |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| |
|
|
| T |
45274610 |
ctatgacgaatacatcactgtacccaaggatgctgttaacattcttatgtatggtgatggccctgcaaggaccattgtcaccggtagaaagaactttgct |
45274511 |
T |
|
| Q |
201 |
gccggtaccaatatacagaacagtgccccctttggtacgtaattcagttattatcgatcaaagc-ttttttattttatttaattaattgtgtaccttatg |
299 |
Q |
| |
|
||||||||||| | | | | ||| |||| ||||||||||||| |||||||| |||||||| ||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
45274510 |
gccggtaccaagaccatgcaaaccgccaccttcggtacgtaattcaattattatctatcaaagctttttttattttatttgattaattgtataccttatg |
45274411 |
T |
|
| Q |
300 |
aatgaagagagagtagatgtgaaatagtagcatcactctcaa |
341 |
Q |
| |
|
| |||||| |||||| || |||| ||||||||||||||||| |
|
|
| T |
45274410 |
attgaagaaagagtatataagaaaaagtagcatcactctcaa |
45274369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 45294339 - 45293997
Alignment:
| Q |
1 |
ccaaggatggtagcggccaatttaaaaccatccaggctgctcttgccgcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgt |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||| || || |
|
|
| T |
45294339 |
ccaaggatggtagcggtcaatttaaaaccatccaggctgctattgccgcttaccctaaggggaacaaaggcagatatactatctacgttaaggctggcgt |
45294240 |
T |
|
| Q |
101 |
ctatgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccctgcaaaaaccattgtcactggtagtaagaaccaaaac |
200 |
Q |
| |
|
|||||| |||||||||||| | ||||| || |||||||||||||||||||||||||||||||| | ||| |||||||| || || || |||||| |
|
|
| T |
45294239 |
ctatgatgaatacatcactattcccaaagacgctgttaacattcttatgtatggtgatggccccggaaagaccattgttaccggaagaaagaacggtgct |
45294140 |
T |
|
| Q |
201 |
gccggtaccaatatacagaacagtgccccctttggtacgtaattcagttattatcgatcaaagcttttttattttatttaattaattgtgtaccttatga |
300 |
Q |
| |
|
|| ||| ||| | | | | ||| |||| |||| |||||||| |||| |||||||| | ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
45294139 |
gctggtgtcaagaccatgcaaaccgccaccttcggtaagtaattcaattatcatcgatcacaacttttttattttatttaataaattgtgtaccttatga |
45294040 |
T |
|
| Q |
301 |
atgaagagagagta--gatgtgaaatagtagcatcactctcaa |
341 |
Q |
| |
|
||||||| || ||| |||| ||||||||| |||||||||||| |
|
|
| T |
45294039 |
atgaagaaagggtaatgatgagaaatagtaacatcactctcaa |
45293997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 45303299 - 45302957
Alignment:
| Q |
1 |
ccaaggatggtagcggccaatttaaaaccatccaggctgctcttgccgcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgt |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||| || || |
|
|
| T |
45303299 |
ccaaggatggtagcggtcaatttaaaaccatccaggctgctattgccgcttaccctaaggggaacaaaggcagatatactatctacgttaaggctggcgt |
45303200 |
T |
|
| Q |
101 |
ctatgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccctgcaaaaaccattgtcactggtagtaagaaccaaaac |
200 |
Q |
| |
|
|||||| |||||||||||| | ||||| || |||||||||||||||||||||||||||||||| | ||| |||||||| || || || |||||| |
|
|
| T |
45303199 |
ctatgatgaatacatcactattcccaaagacgctgttaacattcttatgtatggtgatggccccggaaagaccattgttaccggaagaaagaacggtgct |
45303100 |
T |
|
| Q |
201 |
gccggtaccaatatacagaacagtgccccctttggtacgtaattcagttattatcgatcaaagcttttttattttatttaattaattgtgtaccttatga |
300 |
Q |
| |
|
|| ||| ||| | | | | ||| |||| |||| |||||||| |||| |||||||| | ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
45303099 |
gctggtgtcaagaccatgcaaaccgccaccttcggtaagtaattcaattatcatcgatcacaacttttttattttatttaataaattgtgtaccttatga |
45303000 |
T |
|
| Q |
301 |
atgaagagagagta--gatgtgaaatagtagcatcactctcaa |
341 |
Q |
| |
|
||||||| || ||| |||| ||||||||| |||||||||||| |
|
|
| T |
45302999 |
atgaagaaagggtaatgatgagaaatagtaacatcactctcaa |
45302957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 38583289 - 38583244
Alignment:
| Q |
67 |
aaggcagatatgttatctacgttaaggccggtgtctatgacgaata |
112 |
Q |
| |
|
|||| |||||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
38583289 |
aaggtagatatgtcatctacgtcaaggctggtgtctatgacgaata |
38583244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 38588300 - 38588231
Alignment:
| Q |
49 |
cttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcac |
118 |
Q |
| |
|
|||| ||||||||| |||||||||||| ||||||| || ||||| || ||||||||||| |||||||| |
|
|
| T |
38588300 |
cttatcctaagggattcaaaggcagatacattatctatgtcaaggctggggtctatgacgagtacatcac |
38588231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1835 times since January 2019
Visitors: 1430