View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0134_2D_low_29 (Length: 323)
Name: NF0134_2D_low_29
Description: NF0134_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0134_2D_low_29 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 17 - 323
Target Start/End: Complemental strand, 38045815 - 38045508
Alignment:
| Q |
17 |
aataagatttttaacactatcaataatacccaaattctttaaatgtcattggaattatgtagtggaaactt-actcttccacacaagttcatatggaatt |
115 |
Q |
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| T |
38045815 |
aataagatttttaacactattaataatacccaaattctttaaatgtcattggaattatgtagtggaaactttactcttccacacaagttcatatggaatt |
38045716 |
T |
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| Q |
116 |
gaattcaaattgtttttgttaaaaaataaaataagtttcatactattaatattaacgatcaaacacacaaaatttcataaaacttatacgaagtatttgt |
215 |
Q |
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| T |
38045715 |
gaattcaaattgtttttgttaaaaaataaaataagtttcatactattaatattaacgatcaaacacacaaaatttcataaaacttatacgaagtatttgt |
38045616 |
T |
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| Q |
216 |
agctatgctatcttatagacgctcaattatatttttaaaaactgtaccatccatttacttgaagttatttaatcaagtatcaaataattgcgaatattat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38045615 |
agctatgctatcttatagacgctcaattatatttttaaaaactgtaccatccatttacttgacgttatttaatcaagtatcaaataattgcgaatattat |
38045516 |
T |
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| Q |
316 |
gaaagctt |
323 |
Q |
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|||||||| |
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| T |
38045515 |
gaaagctt |
38045508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 21636054 - 21635822
Alignment:
| Q |
17 |
aataagatttttaacactatcaataatacccaaattctttaaatgtcattggaattatgtagtggaaacttactcttccacacaagttcatatggaattg |
116 |
Q |
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|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
21636054 |
aataagatttttaacactattaataatacccaaattctg-aaatgtcattggaattatgtagtggagacttactcttccacacaagttcatatggaatta |
21635956 |
T |
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| Q |
117 |
aattcaaattgtttttgttaaaaaataaaataagtttcatactattaatattaacgatcaaacacacaaaatttcataaaacttatacgaagtatttgta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
21635955 |
aattcaaattgtttttgttaaaaaataaaataagtttcatactattaatattaacgatcaaacatacaaaatttcataaaatttatacgaagtatttgta |
21635856 |
T |
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| Q |
217 |
gctatgctatcttatagacgctcaattatatttt |
250 |
Q |
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||||||| | |||||||||||||||||||||||| |
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| T |
21635855 |
gctatgccaacttatagacgctcaattatatttt |
21635822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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