View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0134_2D_low_3 (Length: 932)
Name: NF0134_2D_low_3
Description: NF0134_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0134_2D_low_3 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 440; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 133 - 631
Target Start/End: Complemental strand, 22684888 - 22684389
Alignment:
| Q |
133 |
gaaaacaaaattaatctccttgttccttttttcttgactttaaattcatgttttatcacatagatgacacattttaacaaatttatgtgttttgttttat |
232 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22684888 |
gaaatcaaaattaatctccttgttccttttttcttgactttaaattcatgttttatcacatagatgacacattttaacaaatttctgtgttttgttttat |
22684789 |
T |
|
| Q |
233 |
ttataggttgtgactcctttggcaaaaattgccttaatattattgcctgttgcatcaagcatagaggaacttgtcgtcccttctcctaggctaagatgtt |
332 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22684788 |
ttataggttgtgactcctttggcaaaatttgccttaatattattgcctgttgcatcaagcatagaggaacttgtcgtcccttctcctaggctaagatgtt |
22684689 |
T |
|
| Q |
333 |
atgctatgtctctttttatcagaacaactttagtgttttcaagtttatttgtggccctctcttttccatattttggtaagtattgtccatactattatta |
432 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22684688 |
atgctatgtctctttttattaaaacaactttagtgttttcaagtttatttgtggccctctcttttccatattttggtaagtattgtccatactattatta |
22684589 |
T |
|
| Q |
433 |
ctacctttgtgcgttgctctattgcacttacacttctgatg-aaagcgtctctggtgtctgacatggatacgacatcgatcaacacatgtgattacgttc |
531 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
22684588 |
ctacctttgtgcgttgctctgttgcacttacacttctgatgaaaagtgtctctggtgtctgacatggatacgacatcgatcgatacatgtgattacgttc |
22684489 |
T |
|
| Q |
532 |
aattaactcatattttcaaatttttcaccaatgtcaatgtgtctgtgtcagtgttgatttgccgtgtccttgtttgtggaagtgcttcataggtgcattg |
631 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
22684488 |
aattaactcatattttcaaatttttcacccgtgtcaatgtgtctgtgtcagtgtcgatttgtcgtgtccttgtttgtggaagtgcttcataggtgcattg |
22684389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 672 - 906
Target Start/End: Complemental strand, 22684348 - 22684112
Alignment:
| Q |
672 |
agaaacacatcatagcctacaactgtaattgcgactgcaata--aaggttttagagatctcctaaacgccaattgtgaccgcaattgcggccacatttgc |
769 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22684348 |
agaaacacatcatagcctacaactgtaattgcggctgcaatataaaggttttagagatctcctaaacgccaattgtgaccgcaattgcagccacatttgc |
22684249 |
T |
|
| Q |
770 |
tcaagttttgtagcatattggtgtcttacttgccaatatgttactcactatcgcaggaagcaagttataatgacaaagagaatgaatttgcagtgtttaa |
869 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22684248 |
tcaagttttgtagcatattggtgtcttacttgccaatatgttactcactatcgctggaagcaagttataatgacaaagagaatgaatttgcagtgtttaa |
22684149 |
T |
|
| Q |
870 |
ttaatgctttatttgtttaaatttaccacaggttctg |
906 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||| |
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| T |
22684148 |
ttaatgctttatttgttcaaatttaccacaggttctg |
22684112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 170 - 450
Target Start/End: Complemental strand, 22696146 - 22695870
Alignment:
| Q |
170 |
ctttaaattcatgttttatcacatagatgacacattttaacaaatttatgtgttttgttttatttataggttgtgactcctttggcaaaaattgccttaa |
269 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||| |||||||| |
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| T |
22696146 |
ctttaaattcatgttttatcacatagatgacaaattttaacaaatttctgtgttttattttacatataggttgtgactcctctggcaaaatatgccttaa |
22696047 |
T |
|
| Q |
270 |
tattattgcctgttgcatcaagcatagaggaacttgtcgtcccttctcctaggctaagatgttatgctatgtctctttttatcagaacaactttagtgtt |
369 |
Q |
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| T |
22696046 |
cattattgcctattgcatcaagcatagaggaactt---gtcccttctcctaggctaagatgttatcctatgtctattctcatcagaacagctttagtggt |
22695950 |
T |
|
| Q |
370 |
ttcaagtttatttgtggccctctcttttccatattttggtaagtattgtccatactattattactacctttgtgcgttgct |
450 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| ||||| |
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| T |
22695949 |
ttcaagtttagttgtggccctctcttttccatattttggtaagttttgt-cataccattattactacctttgtgcattgct |
22695870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 672 - 779
Target Start/End: Complemental strand, 22695831 - 22695722
Alignment:
| Q |
672 |
agaaacacatcatagcctacaactgtaattgcgactgcaata--aaggttttagagatctcctaaacgccaattgtgaccgcaattgcggccacatttgc |
769 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||| ||| || |||||||||||||||| ||||||||||| |
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| T |
22695831 |
agaaacacatcatagcctacaactgtaattgcggctgcgatataaaggttttagagatctcctctacggcagttgtgaccgcaattgcagccacatttgc |
22695732 |
T |
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| Q |
770 |
tcaagttttg |
779 |
Q |
| |
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| |||||||| |
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| T |
22695731 |
taaagttttg |
22695722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 833 - 906
Target Start/End: Complemental strand, 22695596 - 22695522
Alignment:
| Q |
833 |
gttataatgacaaagagaat-gaatttgcagtgtttaattaatgctttatttgtttaaatttaccacaggttctg |
906 |
Q |
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|||||||||||||||| ||| || ||| | |||| ||||| |||||||||||||| |||||||| ||||||||| |
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| T |
22695596 |
gttataatgacaaagacaatagatttttcggtgtgtaattgatgctttatttgttcaaatttactgcaggttctg |
22695522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 135; Significance: 7e-70; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 24493315 - 24493177
Alignment:
| Q |
1 |
aggtgaggtttgggggttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcggtctagacaa |
100 |
Q |
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| T |
24493315 |
aggtgaggtttgggggttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcggtctagacaa |
24493216 |
T |
|
| Q |
101 |
atgtaagagtgatattgtgtagaataaccaaggaaaaca |
139 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| |
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| T |
24493215 |
atataagagtgatattgtgtagaataaccaaggaaaaca |
24493177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 514 - 556
Target Start/End: Original strand, 10764084 - 10764126
Alignment:
| Q |
514 |
acacatgtgattacgttcaattaactcatattttcaaattttt |
556 |
Q |
| |
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||||||| |||||||||||||||| |||| ||||||||||||| |
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| T |
10764084 |
acacatgcgattacgttcaattaattcattttttcaaattttt |
10764126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 131; Significance: 2e-67; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 92680 - 92542
Alignment:
| Q |
1 |
aggtgaggtttgggggttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcggtctagacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
92680 |
aggtgaggtttgggggttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcgatctagacaa |
92581 |
T |
|
| Q |
101 |
atgtaagagtgatattgtgtagaataaccaaggaaaaca |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |
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|
| T |
92580 |
atgtaagagtgatattgtgtagaataaccaagtaaaaca |
92542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 516 - 556
Target Start/End: Original strand, 14782856 - 14782896
Alignment:
| Q |
516 |
acatgtgattacgttcaattaactcatattttcaaattttt |
556 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||| |
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|
| T |
14782856 |
acatgtgattacgttcaattaattcattttttcaaattttt |
14782896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 561
Target Start/End: Complemental strand, 26456492 - 26456448
Alignment:
| Q |
516 |
acatgtgattacgttcaattaactcatattttcaaatttttcacca |
561 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||| |||| |
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|
| T |
26456492 |
acatgtgattgcgttcaattaactcat-ttttcaaatttttaacca |
26456448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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