View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0134_2D_low_30 (Length: 322)
Name: NF0134_2D_low_30
Description: NF0134_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0134_2D_low_30 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 69 - 313
Target Start/End: Original strand, 28130335 - 28130596
Alignment:
| Q |
69 |
gcctaaaatgtaacatatgctttcatacctttcactttctcattaataatgttatcacaaaacaaaactctgtatgattgtaggaatgcttggtctgctt |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28130335 |
gcctaaaatgtaacatatgctttcatacctttcactttctcattaataatgttatcacaaaacaaaactctgtatgattgtaggaatgcttggtctgctt |
28130434 |
T |
|
| Q |
169 |
ctacacggaattgaactcaacccaacgtgactatgctcagaccgctcaagcatgtgggaaag-----------------gtatggccgagcaaaaattga |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || ||||||||||||||| |
|
|
| T |
28130435 |
ctacacggaattgaactcaacccaacgtgactatgctcagaccgctcaagcatgtgggaaggctctgattaaacgaagtgcttgaccgagcaaaaattga |
28130534 |
T |
|
| Q |
252 |
agctggcaaattagagctggaagcggttccatttgaccttcgttccatactcgatgatgtcc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28130535 |
agctggcaaattagagctggaagcggttccatttgaccttcgttccatactcgatgatgtcc |
28130596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 28130265 - 28130313
Alignment:
| Q |
1 |
ctcatgaaattagaatacctatgaatggcattttaggtaactccaagat |
49 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28130265 |
ctcatgaaattagaacacctatgaatggcattttaggtaactccaagat |
28130313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 69 - 228
Target Start/End: Complemental strand, 44821280 - 44821119
Alignment:
| Q |
69 |
gcctaaaatgtaacatatgctttcatacctttcactttctcattaataatgttatcacaaaacaaaactctgtatgattgtaggaatgcttggtctgctt |
168 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44821280 |
gcctaacatgtaacatatgctttcatagctttcacttgctcattaataatgttatcacaaaacaaaactctgtatgattgtaggaatgcttggtctgctt |
44821181 |
T |
|
| Q |
169 |
cta--cacggaattgaactcaacccaacgtgactatgctcagaccgctcaagcatgtgggaa |
228 |
Q |
| |
|
||| |||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
44821180 |
ctacgcacggaattgaactcaactcaacgggactatgctcagactgctcaagcatgtgggaa |
44821119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 237 - 313
Target Start/End: Complemental strand, 44821085 - 44821009
Alignment:
| Q |
237 |
ccgagcaaaaattgaagctggcaaattagagctggaagcggttccatttgaccttcgttccatactcgatgatgtcc |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44821085 |
ccgagcaaaaattgaagctggcaaattagagctggaagcggttccatttgaccttcgttccatactcgatgatgtcc |
44821009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 44821342 - 44821297
Alignment:
| Q |
1 |
ctcatgaaattagaatacctatgaatggcattttaggtaactccaa |
46 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
44821342 |
ctcatgaaattagaacacctatgaatggcattttaggtaactgcaa |
44821297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2036 times since January 2019
Visitors: 1439