View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0134_2D_low_32 (Length: 314)
Name: NF0134_2D_low_32
Description: NF0134_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0134_2D_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 27430334 - 27430027
Alignment:
| Q |
1 |
aagccctgagatcataatggattctccttgtgaccagtcttccatgttccttagctttgacaactctttcccaacaccagccaaacaagattgccctttt |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27430334 |
aagctctgagatcataatggattctccttgtgaccagtcttccatgttccttagctttgacaactctttcccaacaccagccaaacaagattgccctttt |
27430235 |
T |
|
| Q |
101 |
ctctcatcttcttatccatcaacatcatcatcatcagtgaaaagggaggattgcaaggaagagattgttcatcctcctccttcttcaaatgattacctct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27430234 |
ctctcatcttcttatccatcaacatcatcatcatcagtgaaaagggaggattgcaaggaagagattgttcatcctcctccttcttcaaatgattacctct |
27430135 |
T |
|
| Q |
201 |
ctggactaacttttgatgatccagaaaaggatgtcacactatcatcaacacttgattctcatgatcatttaggtgtcaacattcctgatatcatgtatga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27430134 |
ctggactaacttttgatgatccagaaaaggatgtcacactatcatcaacacttgattctcatgatcatttaggtgtcaacattcctgatatcatgtatga |
27430035 |
T |
|
| Q |
301 |
tgatgtcc |
308 |
Q |
| |
|
|||||||| |
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|
| T |
27430034 |
tgatgtcc |
27430027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 134 - 308
Target Start/End: Complemental strand, 27447478 - 27447304
Alignment:
| Q |
134 |
tcagtgaaaagggaggattgcaaggaagagattgttcatcctcctccttcttcaaatgattacctctctggactaacttttgatgatccagaaaaggatg |
233 |
Q |
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|||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27447478 |
tcagtgaaaaaggaggagtgcaaggaagaggttgttcatcctcctccttcttcaaatgattacctctctggactcacttttgatgatccagaaaaggatg |
27447379 |
T |
|
| Q |
234 |
tcacactatcatcaacacttgattctcatgatcatttaggtgtcaacattcctgatatcatgtatgatgatgtcc |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||||||||||| |
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| T |
27447378 |
tcacactatcatcaacacttgattctcatgatcacttaggtgtccatatttctgatatcatgtatgatgatgtcc |
27447304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 4 - 106
Target Start/End: Complemental strand, 27447578 - 27447476
Alignment:
| Q |
4 |
ccctgagatcataatggattctccttgtgaccagtcttccatgttccttagctttgacaactctttcccaacaccagccaaacaagattgcccttttctc |
103 |
Q |
| |
|
||||||||||||| | |||| |||| ||| || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||||||| |
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|
| T |
27447578 |
ccctgagatcatagtagattatcctactgatcactcttccatgtttcttagttttgacaactctttcccaacaccagccaaacaagactgtccttttctc |
27447479 |
T |
|
| Q |
104 |
tca |
106 |
Q |
| |
|
||| |
|
|
| T |
27447478 |
tca |
27447476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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