View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0134_2D_low_34 (Length: 306)

Name: NF0134_2D_low_34
Description: NF0134_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0134_2D_low_34
NF0134_2D_low_34
[»] chr5 (1 HSPs)
chr5 (20-288)||(36223352-36223621)
[»] chr3 (2 HSPs)
chr3 (101-257)||(39426636-39426791)
chr3 (51-234)||(39425909-39426101)
[»] chr2 (4 HSPs)
chr2 (96-264)||(9300646-9300803)
chr2 (106-252)||(9271464-9271599)
chr2 (96-264)||(9287323-9287479)
chr2 (53-93)||(9300583-9300623)
[»] chr7 (1 HSPs)
chr7 (148-200)||(45241561-45241614)


Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 20 - 288
Target Start/End: Original strand, 36223352 - 36223621
Alignment:
Q  20 gcatcgtcatcctcctcgagacgattgaacttaaaacaagtcaaaattgtccctaaggtctatgttaaaacttttgcagggataacttttggaacaaaca 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36223352 gcatcgtcatcctcctcgagacgattgaacttaaaacaagtcaaaattgtccctaaggtctatgttaaaacatttgcagggataacttttggaacaaaca 36223451  T
Q  120 attgaaagaattgaatgatcattgatctaagaaagaattaaaacctactacagtcactcctttaaacatgcaatattaatttcttcaaata-ctataaat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36223452 attgaaagaattgaatgatcattgatctaagaaagaattaaaacctactacagtcactcctttaaacatgcaatattaatttcttcaaatatctataaat 36223551  T
Q  219 gaaaatagcaaaccaaaaatagattgctgcatctagacaccaaaattgttagttcgttactaagtctgca 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36223552 gaaaatagcaaaccaaaaatagattgctgcatctagacaccaaaattgttagttcgttactaagtctgca 36223621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 101 - 257
Target Start/End: Original strand, 39426636 - 39426791
Alignment:
Q  101 ataacttttggaacaaacaattgaaagaattgaatgatcattgatctaagaaagaattaaaacctactacagtcactcctttaaacatgcaatattaatt 200  Q
    ||||||||| |||||||| | |||||||||||||||||||||||| |||||| ||||||||||||||  ||||| |||||||||||||||||||||||||    
T  39426636 ataacttttcgaacaaactactgaaagaattgaatgatcattgatttaagaa-gaattaaaacctacggcagtcgctcctttaaacatgcaatattaatt 39426734  T
Q  201 tcttcaaatactataaatgaaaatagcaaaccaaaaatagattgctgcatctagaca 257  Q
    ||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||    
T  39426735 tcttcaaatactaaaaatgaaaataaaaaaccaaaaatagattgctgcatctagaca 39426791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 51 - 234
Target Start/End: Original strand, 39425909 - 39426101
Alignment:
Q  51 taaaacaagtcaaaattgtccctaaggtctatgttaaaactt--------ttgcagggataacttttggaacaaacaattgaaagaattgaatgatcatt 142  Q
    |||||||||||||||||||||||||| |||||||||||||||        | |||||||||||||||  ||||||||||||||| |||||||||||||||    
T  39425909 taaaacaagtcaaaattgtccctaagatctatgttaaaacttaaaactgctagcagggataacttttcaaacaaacaattgaaacaattgaatgatcatt 39426008  T
Q  143 gatctaagaaagaattaaaacctactacagtcactcctttaaacatgcaatatta-atttcttcaaatactataaatgaaaatagcaaaccaa 234  Q
    |||||| |||||||||||||||||| |||||  ||||||||||| |||||||||| |||||||||||||||| ||  ||||||||||||||||    
T  39426009 gatctacgaaagaattaaaacctacaacagtagctcctttaaacctgcaatattagatttcttcaaatactaaaaccgaaaatagcaaaccaa 39426101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 264
Target Start/End: Original strand, 9300646 - 9300803
Alignment:
Q  96 cagggataacttttggaacaaacaattgaaagaattgaatgatcattgatctaagaaagaattaaaacctactacagtcactcctttaaacatgcaatat 195  Q
    ||||| ||| |||| ||||||| ||||  |||||||||||||||||||||||  |||||||||||||||||| | ||  | |||||||||||||||        
T  9300646 caggggtaatttttcgaacaaataattagaagaattgaatgatcattgatctgtgaaagaattaaaacctacaataggaattcctttaaacatgca---- 9300741  T
Q  196 taatttcttcaaatactataaatgaaaatagcaaaccaaaaatagattgctgcatctagacaccaaaat 264  Q
           | ||||||||| | || |||||||||||||||||| |||||||||||||| || ||||||||    
T  9300742 -------tccaaatactaaatatcaaaatagcaaaccaaaaagagattgctgcatctggataccaaaat 9300803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 106 - 252
Target Start/End: Original strand, 9271464 - 9271599
Alignment:
Q  106 ttttggaacaaacaattgaaagaattgaatgatcattgatctaagaaagaattaaaacctactacagtcactcctttaaacatgcaatattaatttcttc 205  Q
    |||| ||||||| ||||  ||||||||||||||||||||| | | ||||||||||||||||| | ||||| |||||||||| ||||           | |    
T  9271464 tttttgaacaaataattacaagaattgaatgatcattgatttgataaagaattaaaacctacaatagtcattcctttaaacgtgca-----------tcc 9271552  T
Q  206 aaatactataaatgaaaatagcaaaccaaaaatagattgctgcatct 252  Q
    |||||||| |||||||||||| |||||||||| ||||||||||||||    
T  9271553 aaatactaaaaatgaaaatagtaaaccaaaaagagattgctgcatct 9271599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 264
Target Start/End: Original strand, 9287323 - 9287479
Alignment:
Q  96 cagggataacttttggaacaaacaattgaaagaattgaatgatcattgatctaagaaagaattaaaacctactacagtcactcctttaaacatgcaatat 195  Q
    ||||| |||||||| ||||||| ||||  ||||||||||||||||||||||| || |||||||||||||||| | ||||| | |||| || |||||        
T  9287323 caggggtaacttttcgaacaaataattagaagaattgaatgatcattgatctgag-aagaattaaaacctacaatagtcatttctttgaatatgca---- 9287417  T
Q  196 taatttcttcaaatactataaatgaaaatagcaaaccaaaaatagattgctgcatctagacaccaaaat 264  Q
           | ||||||||| ||||||||| ||||||||||||| |||| |||||| || || ||||||||    
T  9287418 -------tccaaatactaaaaatgaaaacagcaaaccaaaaagagatagctgcaactggataccaaaat 9287479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 9300583 - 9300623
Alignment:
Q  53 aaacaagtcaaaattgtccctaaggtctatgttaaaacttt 93  Q
    ||||||||||||||||||| ||| || ||||||||||||||    
T  9300583 aaacaagtcaaaattgtccttaatgtttatgttaaaacttt 9300623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 45241561 - 45241614
Alignment:
Q  148 aagaaagaattaaaacctacta-cagtcactcctttaaacatgcaatattaatt 200  Q
    ||||||||||||||||||  || |||||| ||||||||||||||||||||||||    
T  45241561 aagaaagaattaaaaccttttaacagtcattcctttaaacatgcaatattaatt 45241614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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