View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0134_2D_low_39 (Length: 298)
Name: NF0134_2D_low_39
Description: NF0134_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0134_2D_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 7e-92; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 4842487 - 4842777
Alignment:
| Q |
1 |
gaaatttaggaaaccattttgttttttcagtttcaatgtgtactccggtactattgttcggtgaaatatatagatgttgaagattggagtgattagccaa |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| |||| || || | ||||||||||||||| ||||||||||||||||||||||| |
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| T |
4842487 |
gaaatttaggaaaccactttgttttttcagtttcaatgtgtactccaatactgtttttagatgaaatatatagatgctgaagattggagtgattagccaa |
4842586 |
T |
|
| Q |
101 |
ggtggtcaatgaaaatgatccttgcatgtaatttccaaagaaggataagtatgccagggatgtgagattggtagtgaaggatggaaaatttccagtgaac |
200 |
Q |
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| T |
4842587 |
attgataagtgaaaatgatccttgcatgtaattttcatagagtgataagaatgtcaaggatgtgagattggtagtgaaggatggaaaatttccaccgaac |
4842686 |
T |
|
| Q |
201 |
agattattgccaaggtcaagaactctgaggtttgttaagttgcttaaacactcaggaagtttagcatcaaacatgttattgctgatgtcca |
291 |
Q |
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| T |
4842687 |
agattatggctaaggtcaagaattctgaggtttgttaagttacttaaacactcaggaagtttagccccaaacatgtttttgctgatatcca |
4842777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 5182367 - 5182080
Alignment:
| Q |
1 |
gaaatttaggaaaccattttgttttttcagtttcaatgtgtactccggtactattgttcggtgaaatatatagatgttgaagattggagtgattagccaa |
100 |
Q |
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||||||| |||||||| ||||| ||||||||||||||| | ||||| ||| || | |||||||||||||||||| |||||||| |||||||||||||| |
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| T |
5182367 |
gaaatttgggaaaccactttgtcttttcagtttcaatgagaactcc---actgttttccggtgaaatatatagatgctgaagatttgagtgattagccaa |
5182271 |
T |
|
| Q |
101 |
ggtggtcaatgaaaatgatccttgcatgtaatttccaaagaaggataagtatgccagggatgtgagattggtagtgaaggatggaaaatttccagtgaac |
200 |
Q |
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| T |
5182270 |
agtgctcaatgaaaatgatccttgcatgtaatttccatagaaggataagtatgccagtgatgtgagattgctaatgaaagatggaaaatttccactgaac |
5182171 |
T |
|
| Q |
201 |
agattattgccaaggtcaagaactctgaggtttgttaagttgcttaaacactcaggaagtttagcatcaaacatgttattgctgatgtcca |
291 |
Q |
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| T |
5182170 |
agattattactaagttcaagaactctaaggtttgttaagttgcttaaacactctggaagtttagcactaaacatgttatagctgatatcca |
5182080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 5195764 - 5195474
Alignment:
| Q |
1 |
gaaatttaggaaaccattttgttttttcagtttcaatgtgtactccggtactattgttcggtgaaatatatagatgttgaagattggagtgattagccaa |
100 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||| |||||| || | || || | ||||||||||||| | ||||||||| ||||||||||| |
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| T |
5195764 |
gaaatttaggaaaccactttgttttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattagccaa |
5195665 |
T |
|
| Q |
101 |
ggtggtcaatgaaaatgatccttgcatgtaatttccaaagaaggataagtatgccagggatgtgagattggtagtgaaggatggaaaatttccagtgaac |
200 |
Q |
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||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| || |||| ||||||||||||||| ||||| |
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| T |
5195664 |
agtgctcaatgaaaatgatccttgcatgtaatttccatagaaggataagtatgccagtgatgtgagattgctaatgaaagatggaaaatttccactgaac |
5195565 |
T |
|
| Q |
201 |
agattattgccaaggtcaagaactctgaggtttgttaagttgcttaaacactcaggaagtttagcatcaaacatgttattgctgatgtcca |
291 |
Q |
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| T |
5195564 |
agattattactaagttcaagaactctgaggtttgttaagttgcttaaacaatctggaagtttagcactaaacatgtttttgctgatatcca |
5195474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 5160122 - 5159832
Alignment:
| Q |
1 |
gaaatttaggaaaccattttgttttttcagtttcaatgtgtactccggtactattgttcggtgaaatatatagatgttgaagattggagtgattagccaa |
100 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||| |||||| || | || || | ||||||||||||| | ||||||||| ||||||||||| |
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| T |
5160122 |
gaaatttaggaaaccactttgttttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattagccaa |
5160023 |
T |
|
| Q |
101 |
ggtggtcaatgaaaatgatccttgcatgtaatttccaaagaaggataagtatgccagggatgtgagattggtagtgaaggatggaaaatttccagtgaac |
200 |
Q |
| |
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||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| || |||| |||||||| |||||| ||||| |
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| T |
5160022 |
agtgctcaatgaaaatgatccttgcatgtaatttccatagaaggataagtatgccagtgatgtgagattgctaatgaaagatggaaactttccactgaac |
5159923 |
T |
|
| Q |
201 |
agattattgccaaggtcaagaactctgaggtttgttaagttgcttaaacactcaggaagtttagcatcaaacatgttattgctgatgtcca |
291 |
Q |
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|||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| | |||||| |||| |
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| T |
5159922 |
agattattactaagttcaagaactctgaggtttgttaagttgcttaaacactcaggaaatttagcactaaacatgttctggctgatatcca |
5159832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 5173038 - 5172748
Alignment:
| Q |
1 |
gaaatttaggaaaccattttgttttttcagtttcaatgtgtactccggtactattgttcggtgaaatatatagatgttgaagattggagtgattagccaa |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| || || || |||| |||||||| |||||| ||||||||||||||||||||||| |
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| T |
5173038 |
gaaatttaggaaaccactttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatgtagatgctgaagattggagtgattagccaa |
5172939 |
T |
|
| Q |
101 |
ggtggtcaatgaaaatgatccttgcatgtaatttccaaagaaggataagtatgccagggatgtgagattggtagtgaaggatggaaaatttccagtgaac |
200 |
Q |
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|| | | ||||||||||||||||||||||||| || ||| |||||| ||| || |||||||||||| || |||||||||||||||||||| |||| |
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| T |
5172938 |
aatgataagtgaaaatgatccttgcatgtaattttcatagagtgataagaatgtcaaggatgtgagattactaatgaaggatggaaaatttccactgaat |
5172839 |
T |
|
| Q |
201 |
agattattgccaaggtcaagaactctgaggtttgttaagttgcttaaacactcaggaagtttagcatcaaacatgttattgctgatgtcca |
291 |
Q |
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| T |
5172838 |
agattatggctaaggtcaagaattctgaggtttgttaagttacttaaacactcaggaagtttagccccaaacatgtttttgctgatatcca |
5172748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 62 - 286
Target Start/End: Complemental strand, 5213869 - 5213645
Alignment:
| Q |
62 |
tgaaatatatagatgttgaagattggagtgattagccaaggtggtcaatgaaaatgatccttgcatgtaatttccaaagaaggataagtatgccagggat |
161 |
Q |
| |
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||||||||||||||| || |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
5213869 |
tgaaatatatagatgctggagattggagtgattagccaaagtgctcaatgaaaatgatccttgcatgtaatttccaaagagggataagtatgccagtgat |
5213770 |
T |
|
| Q |
162 |
gtgagattggtagtgaaggatggaaaatttccagtgaacagattattgccaaggtcaagaactctgaggtttgttaagttgcttaaacactcaggaagtt |
261 |
Q |
| |
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|||||||| || |||||||||||||||||||| |||||| ||||| || ||| |||||||| | |||||||||||||||||||||||||| ||||||| |
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| T |
5213769 |
gtgagattactaatgaaggatggaaaatttccactgaacaaattatagctaagttcaagaacattcaggtttgttaagttgcttaaacactcgggaagtt |
5213670 |
T |
|
| Q |
262 |
tagcatcaaacatgttattgctgat |
286 |
Q |
| |
|
|| ||||||||||| |||||| |
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|
| T |
5213669 |
gcgcgctaaacatgttatagctgat |
5213645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 4856964 - 4857151
Alignment:
| Q |
1 |
gaaatttaggaaaccattttgttttttcagtttcaatgtgtactccggtactattgttcggtgaaatatatagatgttgaagattggagtgattagccaa |
100 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||||||||| | ||||| ||| || | |||||||||||||||||| |||||||| |||||||||||||| |
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|
| T |
4856964 |
gaaatttgggaaaccactttgtcttttcagtttcaatgagaactcc---actgttttccggtgaaatatatagatgctgaagatttgagtgattagccaa |
4857060 |
T |
|
| Q |
101 |
ggtggtcaatgaaaatgatccttgcatgtaatttccaaagaaggataagtatgccagggatgtgagattggtagtgaaggatggaaaatttc |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||| ||||||| || |||||||||||||||||||||||||||||||||| |
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|
| T |
4857061 |
agtggtcaatgaaaatgatccttgcatgtaatttccatagatggat-agtatgcaagagatgtgagattggtagtgaaggatggaaaatttc |
4857151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 7142302 - 7142257
Alignment:
| Q |
1 |
gaaatttaggaaaccattttgttttttcagtttcaatgtgtactcc |
46 |
Q |
| |
|
||||| |||||||||| ||||| ||||||||||||| ||||||||| |
|
|
| T |
7142302 |
gaaatctaggaaaccactttgtattttcagtttcaacgtgtactcc |
7142257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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