View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0134_2D_low_4 (Length: 715)

Name: NF0134_2D_low_4
Description: NF0134_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0134_2D_low_4
NF0134_2D_low_4
[»] chr8 (24 HSPs)
chr8 (368-696)||(9461269-9461596)
chr8 (101-329)||(9461606-9461835)
chr8 (1-62)||(9461849-9461910)
chr8 (404-513)||(32927955-32928064)
chr8 (420-513)||(10368044-10368137)
chr8 (405-498)||(35495054-35495147)
chr8 (413-536)||(38335752-38335874)
chr8 (403-513)||(18123288-18123398)
chr8 (421-498)||(5219199-5219276)
chr8 (461-514)||(5893332-5893385)
chr8 (404-453)||(37684468-37684517)
chr8 (463-515)||(13418735-13418787)
chr8 (410-498)||(26100074-26100162)
chr8 (467-510)||(4662823-4662866)
chr8 (404-454)||(7533861-7533910)
chr8 (410-484)||(16972006-16972080)
chr8 (463-520)||(11038308-11038365)
chr8 (443-511)||(4336571-4336639)
chr8 (437-512)||(7602042-7602117)
chr8 (464-515)||(18355760-18355811)
chr8 (493-548)||(25693705-25693760)
chr8 (464-513)||(26559864-26559913)
chr8 (404-453)||(32101136-32101185)
chr8 (463-536)||(32994130-32994203)
[»] chr6 (10 HSPs)
chr6 (404-513)||(46201-46310)
chr6 (404-487)||(3289808-3289890)
chr6 (438-513)||(765298-765373)
chr6 (408-453)||(25195339-25195384)
chr6 (407-528)||(29338495-29338616)
chr6 (443-536)||(29937558-29937651)
chr6 (414-521)||(1499973-1500080)
chr6 (410-472)||(434191-434253)
chr6 (467-505)||(26550783-26550821)
chr6 (404-453)||(3482109-3482158)
[»] chr3 (12 HSPs)
chr3 (408-542)||(31013085-31013219)
chr3 (404-498)||(31708167-31708261)
chr3 (410-511)||(37334949-37335050)
chr3 (410-513)||(35264324-35264427)
chr3 (416-505)||(1441328-1441417)
chr3 (460-515)||(42913173-42913228)
chr3 (408-472)||(14022040-14022104)
chr3 (426-534)||(32523226-32523334)
chr3 (447-521)||(44958547-44958621)
chr3 (416-453)||(25359547-25359584)
chr3 (477-514)||(32112130-32112167)
chr3 (463-516)||(53567998-53568051)
[»] chr7 (15 HSPs)
chr7 (413-536)||(40491650-40491773)
chr7 (411-484)||(45557435-45557508)
chr7 (404-484)||(17111908-17111988)
chr7 (409-484)||(12306791-12306866)
chr7 (406-479)||(25156265-25156338)
chr7 (421-493)||(1442651-1442723)
chr7 (419-484)||(33853426-33853491)
chr7 (436-513)||(35105253-35105330)
chr7 (410-454)||(40561730-40561774)
chr7 (411-454)||(44570712-44570755)
chr7 (404-454)||(32295247-32295297)
chr7 (411-485)||(38123607-38123681)
chr7 (463-513)||(42481803-42481853)
chr7 (438-499)||(23140362-23140423)
chr7 (491-540)||(40561658-40561707)
[»] chr1 (12 HSPs)
chr1 (404-536)||(47899316-47899448)
chr1 (404-513)||(7524176-7524285)
chr1 (404-513)||(32369944-32370053)
chr1 (404-452)||(30557565-30557613)
chr1 (404-475)||(34915129-34915200)
chr1 (410-487)||(5268288-5268365)
chr1 (404-515)||(11817228-11817339)
chr1 (429-513)||(3515895-3515979)
chr1 (430-542)||(45557391-45557502)
chr1 (408-507)||(35961435-35961534)
chr1 (408-507)||(45660525-45660623)
chr1 (420-453)||(2099660-2099693)
[»] chr2 (16 HSPs)
chr2 (408-514)||(680203-680308)
chr2 (404-505)||(5532953-5533053)
chr2 (467-536)||(11650661-11650730)
chr2 (420-515)||(10618861-10618956)
chr2 (410-496)||(15220791-15220877)
chr2 (404-454)||(16518841-16518891)
chr2 (463-513)||(37745811-37745861)
chr2 (404-453)||(33019129-33019178)
chr2 (412-473)||(36893441-36893502)
chr2 (404-453)||(43501186-43501235)
chr2 (463-513)||(43501229-43501282)
chr2 (403-453)||(11504035-11504085)
chr2 (437-515)||(11759770-11759848)
chr2 (463-541)||(36307087-36307165)
chr2 (468-536)||(31415462-31415533)
chr2 (405-513)||(37283319-37283428)
[»] chr4 (9 HSPs)
chr4 (416-536)||(22250301-22250421)
chr4 (404-515)||(43868199-43868310)
chr4 (463-520)||(24364098-24364155)
chr4 (410-484)||(33843780-33843854)
chr4 (465-514)||(4243512-4243561)
chr4 (442-515)||(34155794-34155867)
chr4 (414-454)||(35065136-35065176)
chr4 (477-515)||(20911810-20911848)
chr4 (459-520)||(5835797-5835858)
[»] scaffold0767 (1 HSPs)
scaffold0767 (404-513)||(2904-3014)
[»] chr5 (8 HSPs)
chr5 (413-542)||(117382-117509)
chr5 (410-506)||(35138943-35139039)
chr5 (412-535)||(14671096-14671218)
chr5 (483-536)||(29822402-29822455)
chr5 (475-515)||(12588024-12588064)
chr5 (437-513)||(14299422-14299498)
chr5 (426-510)||(29922985-29923069)
chr5 (413-515)||(27374206-27374307)
[»] scaffold0361 (1 HSPs)
scaffold0361 (410-496)||(14044-14130)
[»] scaffold0168 (1 HSPs)
scaffold0168 (412-513)||(31900-32001)


Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 368 - 696
Target Start/End: Complemental strand, 9461596 - 9461269
Alignment:
Q  368 agatctaaaagtaactatacttgaagctactctttgttataattcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcact 467  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  9461596 agatctaaaagtaactatacttgaagctactgtttgttataattcaactcacttttatatgaatgtatccaaacacaaatcactttagttgcaattca-t 9461498  T
Q  468 tttagtcagaatcaattttaaataatcaattaactcaaaatcaattttcgtcaaagtagaaccaaacattcacttggtattattgtatacaattgcatgc 567  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  9461497 tttagtcagaatcaattttaaataatcaattaactcaaaatcaattttcgtcgaagtagaaccaaacattcacttggtattattgtatacaattgcacgc 9461398  T
Q  568 actttcagtgaagatagatgcagggatgaaaaacctgtttcccaaattaannnnnnncaattcatggttccatcccacggaattaccctaaaacatccaa 667  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  9461397 actttcagtgaagatagatgcagggatgaaaaacctgtttcccaaattaatttttttcaattcatggttccatcccacggaattaccctaaaacatccaa 9461298  T
Q  668 acaaagaggtcaatataacacgtgctaac 696  Q
    |||||||||||||||||||||||||||||    
T  9461297 acaaagaggtcaatataacacgtgctaac 9461269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 101 - 329
Target Start/End: Complemental strand, 9461835 - 9461606
Alignment:
Q  101 actcaaacaatgttcacttatcagcgaatataaatcannnnnnnaaactctttttcttagacagtaacatccaatcaattaaacagtatacatcatagtc 200  Q
    ||||||||||||| |||||||||||||||||||||||       |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9461835 actcaaacaatgtccacttatcagcgaatataaatcatttttttaaactctttttcttagacggtaacatccaatcaattaaacagtatacatcatagtc 9461736  T
Q  201 ttagtgagtgtttatttcgcacttagatgtcttagaaatgc-tttcaagtgccaaaaacattctagctctataaaatcatgtttggcannnnnnnnnatt 299  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||         |||    
T  9461735 ttagtgagtgtgtatttcgcacttagatgtcttagaaatgcttttcaagtgccaaaaacattctagctctataaaatcatgtttgacatttttttttatt 9461636  T
Q  300 aatcaattttgaggactaaaagcaatatac 329  Q
    ||||||||||||||||||||||||||||||    
T  9461635 aatcaattttgaggactaaaagcaatatac 9461606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 9461910 - 9461849
Alignment:
Q  1 ccttatgtgtttacgataaatagatatgtatacaaagaaaacaaattttctcctttgtaaag 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9461910 ccttatgtgtttacgataaatagatatgtatacaaagaaaacaaattttctcctttgtaaag 9461849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 404 - 513
Target Start/End: Original strand, 32927955 - 32928064
Alignment:
Q  404 ttataattcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactc 503  Q
    ||||| ||||||||||||||| ||||||||| ||||||||||||||||||   | ||| ||| ||||||| ||||||||||||| ||||||||||  |||    
T  32927955 ttatagttcaactcacttttacatgaatgtatccaaacacaaatcactttgccttcaactcaattttagtaagaatcaattttacataatcaattccctc 32928054  T
Q  504 aaaatcaatt 513  Q
    ||||||||||    
T  32928055 aaaatcaatt 32928064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 420 - 513
Target Start/End: Original strand, 10368044 - 10368137
Alignment:
Q  420 ttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactcaaaatcaatt 513  Q
    ||||| ||||||||| | |||||||||||||||||  | ||| ||||||||| ||| ||||||||||| | || ||||| ||||||||||||||    
T  10368044 ttttacatgaatgtatctaaacacaaatcactttaccttcaactcacttttactcaaaatcaattttacaaaaacaattcactcaaaatcaatt 10368137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 405 - 498
Target Start/End: Original strand, 35495054 - 35495147
Alignment:
Q  405 tataattcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaatt 498  Q
    |||| ||||||| ||||||| |||||| || |||||||||||||||||||  | |||  |||||||| |||||| |||||||| ||||||||||    
T  35495054 tatagttcaacttacttttacatgaatatatccaaacacaaatcactttatattcaacccacttttaatcagaagcaattttacataatcaatt 35495147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 413 - 536
Target Start/End: Complemental strand, 38335874 - 38335752
Alignment:
Q  413 aactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactcaaaatcaat 512  Q
    |||||||||||| ||||||||| || ||||||||||| || |  | ||| ||||||||| ||| ||| ||||||| ||  ||||||||||||||||||||    
T  38335874 aactcacttttacatgaatgtatccgaacacaaatcaattcaccttcaactcacttttaatca-aattaattttacattgtcaattaactcaaaatcaat 38335776  T
Q  513 tttcgtcaaagtagaaccaaacat 536  Q
    | | ||||  | ||||||||||||    
T  38335775 tcttgtcaccgaagaaccaaacat 38335752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 403 - 513
Target Start/End: Original strand, 18123288 - 18123398
Alignment:
Q  403 gttataattcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaact 502  Q
    |||||| ||||||||||||||| || ||| ||  | ||||||||||| ||||  | ||||||||||||||| ||| || |||||| || ||||||| |||    
T  18123288 gttatagttcaactcacttttacataaatatattccaacacaaatcattttaccttcaattcacttttagttagagtcgattttacatcatcaattcact 18123387  T
Q  503 caaaatcaatt 513  Q
    | |||||||||    
T  18123388 ctaaatcaatt 18123398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 421 - 498
Target Start/End: Original strand, 5219199 - 5219276
Alignment:
Q  421 tttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaatt 498  Q
    |||||||||||||| | ||| ||||||||||||| ||| || | | ||||||||| ||||||||||| ||||||||||    
T  5219199 tttatatgaatgtatcaaaaaacaaatcactttatttgtaacttatttttagtcaaaatcaattttacataatcaatt 5219276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 461 - 514
Target Start/End: Original strand, 5893332 - 5893385
Alignment:
Q  461 attcacttttagtcagaatcaattttaaataatcaattaactcaaaatcaattt 514  Q
    ||||| ||||||||| ||||||||||| | ||||||||||||||||||||||||    
T  5893332 attcatttttagtcacaatcaattttacagaatcaattaactcaaaatcaattt 5893385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 404 - 453
Target Start/End: Original strand, 37684468 - 37684517
Alignment:
Q  404 ttataattcaactcacttttatatgaatgtaaccaaacacaaatcacttt 453  Q
    ||||||||||||||||||||| || |||||| ||||||||||||||||||    
T  37684468 ttataattcaactcacttttacataaatgtatccaaacacaaatcacttt 37684517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 463 - 515
Target Start/End: Complemental strand, 13418787 - 13418735
Alignment:
Q  463 tcacttttagtcagaatcaattttaaataatcaattaactcaaaatcaatttt 515  Q
    |||||||||||||||||||||| ||  ||||||||| ||||||||||||||||    
T  13418787 tcacttttagtcagaatcaattctacctaatcaattcactcaaaatcaatttt 13418735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 410 - 498
Target Start/End: Complemental strand, 26100162 - 26100074
Alignment:
Q  410 ttcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaatt 498  Q
    ||||||||||||||| || |||| | ||||||||||||  |||||  | ||| ||  ||||||||||||||||||||| ||||||||||    
T  26100162 ttcaactcacttttacataaatgcatccaaacacaaatagctttaccttcaactcgtttttagtcagaatcaattttacataatcaatt 26100074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 467 - 510
Target Start/End: Complemental strand, 4662866 - 4662823
Alignment:
Q  467 ttttagtcagaatcaattttaaataatcaattaactcaaaatca 510  Q
    ||||||||||||||||||||| |||||||||| |||||||||||    
T  4662866 ttttagtcagaatcaattttacataatcaattcactcaaaatca 4662823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 7533861 - 7533910
Alignment:
Q  404 ttataattcaactcacttttatatgaatgtaaccaaacacaaatcacttta 454  Q
    |||||||| |||||||||||||||||||||| ||||||||| |||||||||    
T  7533861 ttataatt-aactcacttttatatgaatgtacccaaacacagatcacttta 7533910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 410 - 484
Target Start/End: Complemental strand, 16972080 - 16972006
Alignment:
Q  410 ttcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaatt 484  Q
    ||||| ||||||||| |||||||||  ||||||||||||| ||||  | ||| |||||||||||| |||||||||    
T  16972080 ttcaaatcacttttacatgaatgtattcaaacacaaatcattttaccttcaactcacttttagtctgaatcaatt 16972006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 520
Target Start/End: Original strand, 11038308 - 11038365
Alignment:
Q  463 tcacttttagtcagaatcaattttaaataatcaattaactcaaaatcaattttcgtca 520  Q
    ||||||||||| | ||||||||||||  |||||||||||||| |||||||||| ||||    
T  11038308 tcacttttagttaaaatcaattttaaggaatcaattaactcataatcaatttttgtca 11038365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 443 - 511
Target Start/End: Complemental strand, 4336639 - 4336571
Alignment:
Q  443 caaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactcaaaatcaa 511  Q
    |||||||||| || | || ||||||||||| || ||||||||||| | |||||||| ||||||||||||    
T  4336639 caaatcacttcagattcagttcacttttagccacaatcaattttacaaaatcaattcactcaaaatcaa 4336571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 437 - 512
Target Start/End: Complemental strand, 7602117 - 7602042
Alignment:
Q  437 caaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactcaaaatcaat 512  Q
    |||| |||||| ||||||  | ||||||| |||||||  |||||||||||| | |||||||| |||||||||||||    
T  7602117 caaatacaaataactttacattcaattcatttttagttcgaatcaattttataaaatcaattcactcaaaatcaat 7602042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 464 - 515
Target Start/End: Complemental strand, 18355811 - 18355760
Alignment:
Q  464 cacttttagtcagaatcaattttaaataatcaattaactcaaaatcaatttt 515  Q
    |||||||| ||| ||||||||||| | |||||||| ||||||||||||||||    
T  18355811 cacttttaatcataatcaattttacaaaatcaattcactcaaaatcaatttt 18355760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 493 - 548
Target Start/End: Complemental strand, 25693760 - 25693705
Alignment:
Q  493 tcaattaactcaaaatcaattttcgtcaaagtagaaccaaacattcacttggtatt 548  Q
    |||||| |||||||||||||||| |||||| ||||||||||| | |||||| ||||    
T  25693760 tcaattcactcaaaatcaatttttgtcaaaatagaaccaaacgtacacttgttatt 25693705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 464 - 513
Target Start/End: Complemental strand, 26559913 - 26559864
Alignment:
Q  464 cacttttagtcagaatcaattttaaataatcaattaactcaaaatcaatt 513  Q
    |||||||||| |||||||||||||   |||||||| ||||||||||||||    
T  26559913 cacttttagttagaatcaattttatcaaatcaattcactcaaaatcaatt 26559864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 404 - 453
Target Start/End: Original strand, 32101136 - 32101185
Alignment:
Q  404 ttataattcaactcacttttatatgaatgtaaccaaacacaaatcacttt 453  Q
    ||||| ||||||||||||||| || |||||| ||| ||||||||||||||    
T  32101136 ttatagttcaactcacttttacataaatgtatccacacacaaatcacttt 32101185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 536
Target Start/End: Complemental strand, 32994203 - 32994130
Alignment:
Q  463 tcacttttagtcagaatcaattttaaataatcaattaactcaaaatcaattttcgtcaaagtagaaccaaacat 536  Q
    ||||||| || |||||||||||||| ||||||| || | |||||||||||| || |||  | ||||||||||||    
T  32994203 tcactttcagccagaatcaattttacataatcagttcattcaaaatcaattgtcatcactgcagaaccaaacat 32994130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 8e-29; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 404 - 513
Target Start/End: Complemental strand, 46310 - 46201
Alignment:
Q  404 ttataattcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactc 503  Q
    ||||||||||||||||||||  | ||||||| |||||||||||| |||||| |||||| ||||||||||| ||||||||||||| | |||||||| ||||    
T  46310 ttataattcaactcacttttccacgaatgtatccaaacacaaataactttaattgcaactcacttttagttagaatcaattttacagaatcaattcactc 46211  T
Q  504 aaaatcaatt 513  Q
    ||||||||||    
T  46210 aaaatcaatt 46201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 404 - 487
Target Start/End: Original strand, 3289808 - 3289890
Alignment:
Q  404 ttataattcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaatttta 487  Q
    ||||||||||||||||||||| || |||||| |||||||||||||||||||  ||||| ||||||| ||||  |||||||||||    
T  3289808 ttataattcaactcacttttacat-aatgtatccaaacacaaatcactttatctgcaactcactttaagtcgaaatcaatttta 3289890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 438 - 513
Target Start/End: Complemental strand, 765373 - 765298
Alignment:
Q  438 aaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactcaaaatcaatt 513  Q
    ||||||||||||||||| || ||| | ||||||||| ||||||||||||| | ||||| || ||||||||||||||    
T  765373 aaacacaaatcactttactttcaacttacttttagttagaatcaattttacacaatcatttcactcaaaatcaatt 765298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 408 - 453
Target Start/End: Complemental strand, 25195384 - 25195339
Alignment:
Q  408 aattcaactcacttttatatgaatgtaaccaaacacaaatcacttt 453  Q
    ||||||||||||||||| || |||||| ||||||||||||||||||    
T  25195384 aattcaactcacttttacataaatgtatccaaacacaaatcacttt 25195339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 407 - 528
Target Start/End: Complemental strand, 29338616 - 29338495
Alignment:
Q  407 taattcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactcaaa 506  Q
    |||||||| ||||||||| || ||| || ||||||| ||||||||||     ||| ||| ||||| | ||||||||||||||| |||||||| | |||||    
T  29338616 taattcaattcacttttacataaatatatccaaacataaatcactttttcaacaactcatttttaataagaatcaattttaaaaaatcaattcattcaaa 29338517  T
Q  507 atcaattttcgtcaaagtagaa 528  Q
    |  | |||| ||||||||||||    
T  29338516 aatagtttttgtcaaagtagaa 29338495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 443 - 536
Target Start/End: Complemental strand, 29937651 - 29937558
Alignment:
Q  443 caaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactcaaaatcaattttcgtcaaagtagaaccaaacat 536  Q
    ||||| ||||||  ||||| ||||||||||||||||||||||||| |||||  ||| ||| ||||| |||| | || |||| | ||||||||||    
T  29937651 caaattactttatctgcaactcacttttagtcagaatcaattttacataatttattcactaaaaatgaattattgtgaaagaaaaaccaaacat 29937558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 414 - 521
Target Start/End: Original strand, 1499973 - 1500080
Alignment:
Q  414 actcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactcaaaatcaatt 513  Q
    ||||||||||| || ||||||  |||||| |||||| ||||    ||| || ||||||| || ||||||||||| | |||||||| | ||||||||||||    
T  1499973 actcacttttacataaatgtattcaaacataaatcaatttacactcaactcgcttttagccaaaatcaattttacaaaatcaattcagtcaaaatcaatt 1500072  T
Q  514 ttcgtcaa 521  Q
    || |||||    
T  1500073 tttgtcaa 1500080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 410 - 472
Target Start/End: Complemental strand, 434253 - 434191
Alignment:
Q  410 ttcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttag 472  Q
    ||||||||||||||| | |||| || |||||||||||||| ||||  ||||| ||||||||||    
T  434253 ttcaactcacttttacacgaatatatccaaacacaaatcattttacctgcaactcacttttag 434191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 467 - 505
Target Start/End: Complemental strand, 26550821 - 26550783
Alignment:
Q  467 ttttagtcagaatcaattttaaataatcaattaactcaa 505  Q
    |||||| |||||||||||||| |||||||||||||||||    
T  26550821 ttttagacagaatcaattttatataatcaattaactcaa 26550783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 404 - 453
Target Start/End: Original strand, 3482109 - 3482158
Alignment:
Q  404 ttataattcaactcacttttatatgaatgtaaccaaacacaaatcacttt 453  Q
    ||||| ||||||| ||||||| |||||||||  |||||||||||||||||    
T  3482109 ttatagttcaacttacttttacatgaatgtattcaaacacaaatcacttt 3482158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 408 - 542
Target Start/End: Original strand, 31013085 - 31013219
Alignment:
Q  408 aattcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactcaaaa 507  Q
    |||||||||||||| || ||||||| | |||||||||||||||||||  | ||| |||||||||||| ||||||||||||   |||||||| ||||||||    
T  31013085 aattcaactcacttgtacatgaatgcatccaaacacaaatcactttatctacaactcacttttagtcggaatcaattttatggaatcaattcactcaaaa 31013184  T
Q  508 tcaattttcgtcaaagtagaaccaaacattcactt 542  Q
    |||||| | | ||||| ||||||||| || |||||    
T  31013185 tcaattcttgccaaagcagaaccaaatatacactt 31013219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 404 - 498
Target Start/End: Complemental strand, 31708261 - 31708167
Alignment:
Q  404 ttataattcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaatt 498  Q
    ||||||||||||||||||||| ||||||||| ||||||||||| |||||||   |||| ||||||||||||  ||||||||||| | ||||||||    
T  31708261 ttataattcaactcacttttacatgaatgtatccaaacacaaaccactttatcagcaactcacttttagtcctaatcaattttacaaaatcaatt 31708167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 410 - 511
Target Start/End: Complemental strand, 37335050 - 37334949
Alignment:
Q  410 ttcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactcaaaatc 509  Q
    ||||||||| |||||||||||||||  || ||| |||||||||||  | ||| ||| |||||||| |||||||||||| |||||||||| ||| ||||||    
T  37335050 ttcaactcatttttatatgaatgtattcagacataaatcactttaccttcaactcaattttagtcggaatcaattttatataatcaattcacttaaaatc 37334951  T
Q  510 aa 511  Q
    ||    
T  37334950 aa 37334949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 410 - 513
Target Start/End: Complemental strand, 35264427 - 35264324
Alignment:
Q  410 ttcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactcaaaatc 509  Q
    ||||| ||| ||||| ||||||||| ||||||| || |||||||| || ||| |||||||| || | ||||||||||| | |||||||| ||||||||||    
T  35264427 ttcaagtcatttttacatgaatgtacccaaacataactcactttactttcaactcacttttggttacaatcaattttacagaatcaattcactcaaaatc 35264328  T
Q  510 aatt 513  Q
    ||||    
T  35264327 aatt 35264324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 416 - 505
Target Start/End: Complemental strand, 1441417 - 1441328
Alignment:
Q  416 tcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactcaa 505  Q
    |||||||||  |||||||| | |||||||||||||||||  | ||| |||||||||| |||||||||||||| | ||| |||| ||||||    
T  1441417 tcacttttacgtgaatgtatctaaacacaaatcactttacgttcaactcacttttagacagaatcaattttacaaaattaattcactcaa 1441328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 460 - 515
Target Start/End: Original strand, 42913173 - 42913228
Alignment:
Q  460 aattcacttttagtcagaatcaattttaaataatcaattaactcaaaatcaatttt 515  Q
    |||||||||||||| ||||| ||||||| | |||||||| ||||||||||||||||    
T  42913173 aattcacttttagttagaattaattttatacaatcaattcactcaaaatcaatttt 42913228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 408 - 472
Target Start/End: Original strand, 14022040 - 14022104
Alignment:
Q  408 aattcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttag 472  Q
    |||||| |||| ||||| ||||||||| |||||||||||| ||||||  ||||| ||||||||||    
T  14022040 aattcagctcaattttaaatgaatgtatccaaacacaaattactttatctgcaactcacttttag 14022104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 426 - 534
Target Start/End: Complemental strand, 32523334 - 32523226
Alignment:
Q  426 atgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactcaaaatcaattttcgtcaaagta 525  Q
    ||||||| | |||||||||||||||||||  | ||| | ||||||| ||| |||||||||||  ||||||||| ||  |||||||||| | ||||  | |    
T  32523334 atgaatgcatccaaacacaaatcactttatcttcaactaacttttaatcaaaatcaattttacctaatcaattcacctaaaatcaattcttgtcaccgaa 32523235  T
Q  526 gaaccaaac 534  Q
    |||||||||    
T  32523234 gaaccaaac 32523226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 447 - 521
Target Start/End: Complemental strand, 44958621 - 44958547
Alignment:
Q  447 tcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactcaaaatcaattttcgtcaa 521  Q
    |||||||| || ||| |||||||||| || ||||||||||| || ||||||| ||||||| || ||||| |||||    
T  44958621 tcactttactttcaactcacttttagccaaaatcaattttacatgatcaattcactcaaagtcgatttttgtcaa 44958547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 416 - 453
Target Start/End: Complemental strand, 25359584 - 25359547
Alignment:
Q  416 tcacttttatatgaatgtaaccaaacacaaatcacttt 453  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  25359584 tcacttctatatgaatgtatccaaacacaaatcacttt 25359547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 514
Target Start/End: Original strand, 32112130 - 32112167
Alignment:
Q  477 aatcaattttaaataatcaattaactcaaaatcaattt 514  Q
    ||||||||||| |||||||||| |||||||||||||||    
T  32112130 aatcaattttacataatcaattcactcaaaatcaattt 32112167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 516
Target Start/End: Original strand, 53567998 - 53568051
Alignment:
Q  463 tcacttttagtcagaatcaattttaaataatcaattaactcaaaatcaattttc 516  Q
    ||||||||| ||| ||||||||||  | |||||||| |||||||||||||||||    
T  53567998 tcacttttaatcaaaatcaattttgtaaaatcaattcactcaaaatcaattttc 53568051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 8e-23; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 413 - 536
Target Start/End: Original strand, 40491650 - 40491773
Alignment:
Q  413 aactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactcaaaatcaat 512  Q
    |||||||||||| ||||||||| ||||| | |||||||||||  | ||| ||||||||||||| ||||||||||| | |||||||| |||||||||||||    
T  40491650 aactcacttttacatgaatgtatccaaaaataaatcactttaccttcaactcacttttagtcaaaatcaattttacagaatcaattcactcaaaatcaat 40491749  T
Q  513 tttcgtcaaagtagaaccaaacat 536  Q
    | | ||||  | ||||||||||||    
T  40491750 tcttgtcaccgcagaaccaaacat 40491773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 411 - 484
Target Start/End: Original strand, 45557435 - 45557508
Alignment:
Q  411 tcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaatt 484  Q
    |||||||||||||| ||||||||| |||||||||||||||||||  | ||| ||||||||||||||||||||||    
T  45557435 tcaactcacttttacatgaatgtatccaaacacaaatcactttaccttcaactcacttttagtcagaatcaatt 45557508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 404 - 484
Target Start/End: Original strand, 17111908 - 17111988
Alignment:
Q  404 ttataattcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaatt 484  Q
    ||||||||| ||||| ||||| ||||||| | |||||||||||||||||||  | ||||||| ||||||||| ||||||||    
T  17111908 ttataattctactcatttttacatgaatgcatccaaacacaaatcactttacctacaattcaattttagtcaaaatcaatt 17111988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 409 - 484
Target Start/End: Original strand, 12306791 - 12306866
Alignment:
Q  409 attcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaatt 484  Q
    |||||||||||||||| |||||| || ||||||| |||||||||||  | ||| |||||||||| |||||||||||    
T  12306791 attcaactcacttttacatgaatctagccaaacataaatcactttatcttcaactcacttttagccagaatcaatt 12306866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 406 - 479
Target Start/End: Original strand, 25156265 - 25156338
Alignment:
Q  406 ataattcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaat 479  Q
    |||| ||||||||||||||||||||||||  ||||||||||||| ||||  | ||| ||| |||||||||||||    
T  25156265 ataaatcaactcacttttatatgaatgtattcaaacacaaatcattttatcttcaactcatttttagtcagaat 25156338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 421 - 493
Target Start/End: Original strand, 1442651 - 1442723
Alignment:
Q  421 tttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataat 493  Q
    |||| ||||||||| ||| ||| ||| |||||||  ||||| ||||||||||||||||||||||||| |||||    
T  1442651 tttacatgaatgtatccatacataaaccactttacctgcaactcacttttagtcagaatcaattttacataat 1442723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 419 - 484
Target Start/End: Complemental strand, 33853491 - 33853426
Alignment:
Q  419 cttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaatt 484  Q
    |||||| ||||||||| ||||||| |||||||||||| | ||| ||||| |||| |||||||||||    
T  33853491 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 33853426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 436 - 513
Target Start/End: Original strand, 35105253 - 35105330
Alignment:
Q  436 ccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactcaaaatcaatt 513  Q
    ||||||| ||||||||||   | |||| |||||| |  |||||||||||||||| |||||||| ||||||||||||||    
T  35105253 ccaaacataaatcacttttcattcaatccactttcatccagaatcaattttaaaaaatcaattcactcaaaatcaatt 35105330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 410 - 454
Target Start/End: Complemental strand, 40561774 - 40561730
Alignment:
Q  410 ttcaactcacttttatatgaatgtaaccaaacacaaatcacttta 454  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||||    
T  40561774 ttcaactcacttttacatgaatgtatccaaacataaatcacttta 40561730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 411 - 454
Target Start/End: Complemental strand, 44570755 - 44570712
Alignment:
Q  411 tcaactcacttttatatgaatgtaaccaaacacaaatcacttta 454  Q
    ||||||||||||||||||||| ||| |||||| |||||||||||    
T  44570755 tcaactcacttttatatgaatataatcaaacataaatcacttta 44570712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 32295247 - 32295297
Alignment:
Q  404 ttataattcaactcacttttatatgaatgtaaccaaacacaaatcacttta 454  Q
    ||||||||||||||||||||| || ||||||   |||||||||||||||||    
T  32295247 ttataattcaactcacttttacataaatgtattaaaacacaaatcacttta 32295297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 411 - 485
Target Start/End: Complemental strand, 38123681 - 38123607
Alignment:
Q  411 tcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattt 485  Q
    |||||||||||||| ||||||||  || ||||||||| ||||||  | ||| ||| ||||||||| |||||||||    
T  38123681 tcaactcacttttacatgaatgtgtccgaacacaaattactttaccttcaactcaattttagtcataatcaattt 38123607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 463 - 513
Target Start/End: Complemental strand, 42481853 - 42481803
Alignment:
Q  463 tcacttttagtcagaatcaattttaaataatcaattaactcaaaatcaatt 513  Q
    ||||||||  ||||||||||||||| |||||||||| ||| ||||||||||    
T  42481853 tcactttttttcagaatcaattttacataatcaattcacttaaaatcaatt 42481803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 499
Target Start/End: Original strand, 23140362 - 23140423
Alignment:
Q  438 aaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaatta 499  Q
    ||||||||||||||||| || | | ||||||||||||| ||||||||| | | |||||||||    
T  23140362 aaacacaaatcactttattttctaatcacttttagtcataatcaatttgacaaaatcaatta 23140423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 491 - 540
Target Start/End: Complemental strand, 40561707 - 40561658
Alignment:
Q  491 aatcaattaactcaaaatcaattttcgtcaaagtagaaccaaacattcac 540  Q
    |||||||| |||||||||||| ||| ||||  ||||||||||||||||||    
T  40561707 aatcaattcactcaaaatcaacttttgtcatggtagaaccaaacattcac 40561658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 404 - 536
Target Start/End: Original strand, 47899316 - 47899448
Alignment:
Q  404 ttataattcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactc 503  Q
    |||| |||||||| || |||| ||||||||    ||| |||||| | ||||  ||||| ||||||||||| ||||||||||||| | |||||||| ||||    
T  47899316 ttatgattcaacttacgtttagatgaatgtggataaatacaaattattttatctgcaactcacttttagtaagaatcaattttacaaaatcaattcactc 47899415  T
Q  504 aaaatcaattttcgtcaaagtagaaccaaacat 536  Q
    |||||||||| | ||||||||| ||| ||||||    
T  47899416 aaaatcaattcttgtcaaagtataacaaaacat 47899448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 404 - 513
Target Start/End: Original strand, 7524176 - 7524285
Alignment:
Q  404 ttataattcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactc 503  Q
    ||||| ||||||||||||||| || |||||  |||||||||||||||||||  |  |  ||||||||||| ||||||||||||| | ||||| || || |    
T  7524176 ttatagttcaactcacttttacataaatgtgtccaaacacaaatcactttaccttgagctcacttttagttagaatcaattttatagaatcagttcaccc 7524275  T
Q  504 aaaatcaatt 513  Q
    ||||||||||    
T  7524276 aaaatcaatt 7524285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 404 - 513
Target Start/End: Complemental strand, 32370053 - 32369944
Alignment:
Q  404 ttataattcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactc 503  Q
    |||||||| ||||  |||||| ||||||||| |||||||||||||||||||    |||| || | ||||||| |||||||| || | |||||||| ||||    
T  32370053 ttataattgaacttgcttttacatgaatgtatccaaacacaaatcactttataatcaatccattattagtcaaaatcaattctacacaatcaattcactc 32369954  T
Q  504 aaaatcaatt 513  Q
    ||||||||||    
T  32369953 aaaatcaatt 32369944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 404 - 452
Target Start/End: Original strand, 30557565 - 30557613
Alignment:
Q  404 ttataattcaactcacttttatatgaatgtaaccaaacacaaatcactt 452  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  30557565 ttatagttcaactcacttttatatgaatgtatccaaacacaaatcactt 30557613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 404 - 475
Target Start/End: Original strand, 34915129 - 34915200
Alignment:
Q  404 ttataattcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtca 475  Q
    ||||||||||||||||||||| |||||||||  |||||| |||||| ||||  ||||| |||||||||||||    
T  34915129 ttataattcaactcacttttacatgaatgtattcaaacataaatcattttacctgcaactcacttttagtca 34915200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 410 - 487
Target Start/End: Original strand, 5268288 - 5268365
Alignment:
Q  410 ttcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaatttta 487  Q
    ||||||||||||||| |||||| ||  |||||| |||||||||||  | ||| |||||||||| ||||||||||||||    
T  5268288 ttcaactcacttttacatgaatatattcaaacaaaaatcactttacattcaactcacttttaggcagaatcaatttta 5268365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 404 - 515
Target Start/End: Complemental strand, 11817339 - 11817228
Alignment:
Q  404 ttataattcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactc 503  Q
    ||||| ||||||| ||||||| || ||||||  |||| | |||||| ||||  | ||| || |||||||| ||||||||||||| | |||||||| ||||    
T  11817339 ttatagttcaactaacttttacattaatgtattcaaataaaaatcattttatcttcaactcgcttttagttagaatcaattttacaaaatcaattcactc 11817240  T
Q  504 aaaatcaatttt 515  Q
    ||| ||||||||    
T  11817239 aaactcaatttt 11817228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 429 - 513
Target Start/End: Original strand, 3515895 - 3515979
Alignment:
Q  429 aatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactcaaaatcaatt 513  Q
    |||||| ||||||||||||||||| |  | ||| ||| ||||   |||||||||||||| |||||||||| |||||||| |||||    
T  3515895 aatgtatccaaacacaaatcacttcaccttcaactcaattttcaccagaatcaattttacataatcaattcactcaaaaccaatt 3515979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 430 - 542
Target Start/End: Original strand, 45557391 - 45557502
Alignment:
Q  430 atgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactcaaaatcaattttcgtcaaagtagaac 529  Q
    ||||||||||||| |||||||||||  | | | ||||||| || || ||||||||||| | |||||||| | |||||||||||||| | || || | |||    
T  45557391 atgtaaccaaacataaatcactttatgttcgactcacttt-agccataatcaattttacacaatcaatttattcaaaatcaatttttgccacagcataac 45557489  T
Q  530 caaacattcactt 542  Q
    ||||||| |||||    
T  45557490 caaacatacactt 45557502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 507
Target Start/End: Original strand, 35961435 - 35961534
Alignment:
Q  408 aattcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactcaaaa 507  Q
    ||||||||||||||||| |||||||||   ||||| |||||| ||||  | ||| |||||||||| |  |||| |||||| | |||||||| ||||||||    
T  35961435 aattcaactcacttttacatgaatgtatagaaacataaatcattttaccttcaactcacttttagccgtaatctattttacagaatcaatttactcaaaa 35961534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 507
Target Start/End: Complemental strand, 45660623 - 45660525
Alignment:
Q  408 aattcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactcaaaa 507  Q
    ||||||||| ||||||| |||| | || ||||||| |||||||| || ||  || ||||||||||||| ||||||||||| | ||||||||  |||||||    
T  45660623 aattcaacttacttttacatgagtttatccaaacataaatcactctacttt-aactcacttttagtcaaaatcaattttacagaatcaattccctcaaaa 45660525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 420 - 453
Target Start/End: Complemental strand, 2099693 - 2099660
Alignment:
Q  420 ttttatatgaatgtaaccaaacacaaatcacttt 453  Q
    ||||||||||||||| ||||||||||||||||||    
T  2099693 ttttatatgaatgtatccaaacacaaatcacttt 2099660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 408 - 514
Target Start/End: Complemental strand, 680308 - 680203
Alignment:
Q  408 aattcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactcaaaa 507  Q
    ||||||||||||||||| |||||||||  |||||||||| |||||||  | ||| |||  ||||| |||| |||| |||| |||||||||| ||||||||    
T  680308 aattcaactcacttttacatgaatgtatgcaaacacaaaacactttaccttcaactca-atttagacagactcaactttacataatcaattcactcaaaa 680210  T
Q  508 tcaattt 514  Q
    |||||||    
T  680209 tcaattt 680203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 404 - 505
Target Start/End: Complemental strand, 5533053 - 5532953
Alignment:
Q  404 ttataattcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactc 503  Q
    |||||||||||||||| |||| ||||| ||| ||||| |||||| | |||| ||| || ||||||||||| | ||||||||||| |||||||| ||| ||    
T  5533053 ttataattcaactcacatttacatgaacgtatccaaaaacaaataagtttacttgtaactcacttttagt-ataatcaattttacataatcaactaaatc 5532955  T
Q  504 aa 505  Q
    ||    
T  5532954 aa 5532953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 467 - 536
Target Start/End: Complemental strand, 11650730 - 11650661
Alignment:
Q  467 ttttagtcagaatcaattttaaataatcaattaactcaaaatcaattttcgtcaaagtagaaccaaacat 536  Q
    ||||||||| |||||| |||| |||||||||| |||||||||||||||| ||||| | | ||||||||||    
T  11650730 ttttagtcataatcaaatttacataatcaattcactcaaaatcaatttttgtcaacgcaaaaccaaacat 11650661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 420 - 515
Target Start/End: Complemental strand, 10618956 - 10618861
Alignment:
Q  420 ttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactcaaaatcaatttt 515  Q
    |||||||| ||||||  |||||| || ||||||||  | ||||||| ||||||  ||||||||||||| | |||||||| ||| ||||||||||||    
T  10618956 ttttatataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatttt 10618861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 410 - 496
Target Start/End: Complemental strand, 15220877 - 15220791
Alignment:
Q  410 ttcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaa 496  Q
    ||||||||||||| | ||||||||| ||||||| |||||||||||  | ||| |||||||| |||| ||||||| ||| | ||||||    
T  15220877 ttcaactcactttaacatgaatgtatccaaacataaatcactttacattcaactcacttttcgtcataatcaatattacaaaatcaa 15220791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 16518841 - 16518891
Alignment:
Q  404 ttataattcaactcacttttatatgaatgtaaccaaacacaaatcacttta 454  Q
    ||||| ||||||||||||||| ||||||||| |||||||||||||| ||||    
T  16518841 ttatagttcaactcacttttacatgaatgtatccaaacacaaatcatttta 16518891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 463 - 513
Target Start/End: Complemental strand, 37745861 - 37745811
Alignment:
Q  463 tcacttttagtcagaatcaattttaaataatcaattaactcaaaatcaatt 513  Q
    |||||||||| || ||||||||||| |||||||||| ||||||||||||||    
T  37745861 tcacttttagacaaaatcaattttacataatcaattcactcaaaatcaatt 37745811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 404 - 453
Target Start/End: Complemental strand, 33019178 - 33019129
Alignment:
Q  404 ttataattcaactcacttttatatgaatgtaaccaaacacaaatcacttt 453  Q
    ||||| ||||||||||||||| ||||||| | ||||||||||||||||||    
T  33019178 ttatagttcaactcacttttacatgaatgcatccaaacacaaatcacttt 33019129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 412 - 473
Target Start/End: Complemental strand, 36893502 - 36893441
Alignment:
Q  412 caactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagt 473  Q
    |||| |||||||||| ||||||||| |||||||||||| |||| || ||||||| |||||||    
T  36893502 caacccacttttatacgaatgtaactaaacacaaatcattttactttcaattcatttttagt 36893441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 404 - 453
Target Start/End: Original strand, 43501186 - 43501235
Alignment:
Q  404 ttataattcaactcacttttatatgaatgtaaccaaacacaaatcacttt 453  Q
    ||||||||||||||| ||||| |||||||||  |||||||||||||||||    
T  43501186 ttataattcaactcagttttacatgaatgtatacaaacacaaatcacttt 43501235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 513
Target Start/End: Original strand, 43501229 - 43501282
Alignment:
Q  463 tcacttttagtcagaatcaattttaaataatcaatta---actcaaaatcaatt 513  Q
    ||||||||||||||||| ||||||| |||||||||||   ||||||||||||||    
T  43501229 tcacttttagtcagaataaattttacataatcaattattcactcaaaatcaatt 43501282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 453
Target Start/End: Complemental strand, 11504085 - 11504035
Alignment:
Q  403 gttataattcaactcacttttatatgaatgtaaccaaacacaaatcacttt 453  Q
    |||||| ||||||||||||||| |||||||||   ||||||||||||||||    
T  11504085 gttatagttcaactcacttttacatgaatgtattaaaacacaaatcacttt 11504035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 437 - 515
Target Start/End: Complemental strand, 11759848 - 11759770
Alignment:
Q  437 caaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactcaaaatcaatttt 515  Q
    |||||||||| || ||||  | ||| ||||||||| ||| ||||||||||| | |||||||| ||||||| ||||||||    
T  11759848 caaacacaaaccaatttaccttcaactcacttttaatcaaaatcaattttacaaaatcaattcactcaaactcaatttt 11759770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 463 - 541
Target Start/End: Original strand, 36307087 - 36307165
Alignment:
Q  463 tcacttttagtcagaatcaattttaaataatcaattaactcaaaatcaattttcgtcaaagtagaaccaaacattcact 541  Q
    |||||||||  || ||||||||||| |||||||||| |||||| ||||||||| || ||||  |||| |||||| ||||    
T  36307087 tcacttttatccataatcaattttacataatcaattcactcaagatcaatttttgtaaaagctgaactaaacatacact 36307165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 536
Target Start/End: Original strand, 31415462 - 31415533
Alignment:
Q  468 tttagtcagaatcaattttaaataa---tcaattaactcaaaatcaattttcgtcaaagtagaaccaaacat 536  Q
    |||||||| ||||||||||| || |   |||||| ||| |||||||||| | ||||||||||||||||||||    
T  31415462 tttagtcataatcaattttacatgagattcaattcacttaaaatcaattattgtcaaagtagaaccaaacat 31415533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 405 - 513
Target Start/End: Original strand, 37283319 - 37283428
Alignment:
Q  405 tataattcaactcacttttatatgaatgtaac-caaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactc 503  Q
    |||| ||||||| |||||||  ||||| || | |||| |||||| | |||| || ||| ||||||||| ||  ||||||||||| |||||||||| | ||    
T  37283319 tatagttcaacttacttttacctgaatatatctcaaatacaaataattttattttcaactcacttttaatctaaatcaattttatataatcaatttagtc 37283418  T
Q  504 aaaatcaatt 513  Q
    ||||||||||    
T  37283419 aaaatcaatt 37283428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 416 - 536
Target Start/End: Original strand, 22250301 - 22250421
Alignment:
Q  416 tcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactcaaaatcaatttt 515  Q
    ||||||||| ||||||||| |||||   ||||||||| |  | ||| || |||||||||| ||||||||||| | ||||||||  ||||||||||||| |    
T  22250301 tcacttttacatgaatgtatccaaatgtaaatcacttcacattcaactcgcttttagtcataatcaattttacagaatcaattccctcaaaatcaattgt 22250400  T
Q  516 cgtcaaagtagaaccaaacat 536  Q
     ||||||||||  ||||||||    
T  22250401 tgtcaaagtagtgccaaacat 22250421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 404 - 515
Target Start/End: Original strand, 43868199 - 43868310
Alignment:
Q  404 ttataattcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactc 503  Q
    |||||||| || ||||||||| || |||||| ||||| ||||||||||||| || ||| | |||||||   ||||| ||||||| | |||||||| | ||    
T  43868199 ttataatttaagtcacttttacataaatgtatccaaagacaaatcactttactttcaacttacttttaactagaattaattttacaaaatcaattcattc 43868298  T
Q  504 aaaatcaatttt 515  Q
    ||||||||||||    
T  43868299 aaaatcaatttt 43868310  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 463 - 520
Target Start/End: Complemental strand, 24364155 - 24364098
Alignment:
Q  463 tcacttttagtcagaatcaattttaaataatcaattaactcaaaatcaattttcgtca 520  Q
    ||||||||||| ||||||||||||| |||||||||| | |||||||||||||| ||||    
T  24364155 tcacttttagtgagaatcaattttacataatcaattcattcaaaatcaatttttgtca 24364098  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 410 - 484
Target Start/End: Original strand, 33843780 - 33843854
Alignment:
Q  410 ttcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaatt 484  Q
    ||||||||||| ||| |||||| || ||||||| |||||||||||  | ||| |||||||||| |||||||||||    
T  33843780 ttcaactcactattacatgaatatatccaaacataaatcactttacatccaactcacttttagccagaatcaatt 33843854  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 465 - 514
Target Start/End: Original strand, 4243512 - 4243561
Alignment:
Q  465 acttttagtcagaatcaattttaaataatcaattaactcaaaatcaattt 514  Q
    |||||||||| |||||||||||| |||||| || ||||||||||||||||    
T  4243512 acttttagtcggaatcaattttacataatctatcaactcaaaatcaattt 4243561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 442 - 515
Target Start/End: Original strand, 34155794 - 34155867
Alignment:
Q  442 acaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactcaaaatcaatttt 515  Q
    |||||||| |||| |  ||| ||||||||||| ||||||||||||| ||||| |||| |||||||| |||||||    
T  34155794 acaaatcaatttattgacaactcacttttagttagaatcaattttacataattaattcactcaaaaacaatttt 34155867  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 414 - 454
Target Start/End: Original strand, 35065136 - 35065176
Alignment:
Q  414 actcacttttatatgaatgtaaccaaacacaaatcacttta 454  Q
    ||||||||||| ||||||||| |||||||||||||||||||    
T  35065136 actcacttttacatgaatgtatccaaacacaaatcacttta 35065176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 477 - 515
Target Start/End: Complemental strand, 20911848 - 20911810
Alignment:
Q  477 aatcaattttaaataatcaattaactcaaaatcaatttt 515  Q
    ||||||||||| |||||||||| ||||||||||||||||    
T  20911848 aatcaattttacataatcaattcactcaaaatcaatttt 20911810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 459 - 520
Target Start/End: Original strand, 5835797 - 5835858
Alignment:
Q  459 caattcacttttagtcagaatcaattttaaataatcaattaactcaaaatcaattttcgtca 520  Q
    ||||||| ||||| ||| |||||||| || | |||||||| | |||||||||||||||||||    
T  5835797 caattcagttttaatcaaaatcaattctacaaaatcaattcaatcaaaatcaattttcgtca 5835858  T

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Target: scaffold0767 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 404 - 513
Target Start/End: Complemental strand, 3014 - 2904
Alignment:
Q  404 ttataattcaactcacttt-tatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaact 502  Q
    ||||||||||||||||||  |||||| ||||  ||||||||| |||||||||  | ||| ||||||||| || ||||| ||||||   |||||||| |||    
T  3014 ttataattcaactcacttgctatatggatgtgtccaaacacatatcactttatctacaactcacttttaatcggaatctattttacgaaatcaattcact 2915  T
Q  503 caaaatcaatt 513  Q
    |||||||||||    
T  2914 caaaatcaatt 2904  T

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Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 413 - 542
Target Start/End: Complemental strand, 117509 - 117382
Alignment:
Q  413 aactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactcaaaatcaat 512  Q
    |||||||||||| ||  ||||| |||||||  ||||| ||||  | ||| |||||| |||||||||||||| ||| |||||||||| ||||  |||||||    
T  117509 aactcacttttacatagatgtatccaaacatgaatcattttaccttcaactcacttctagtcagaatcaatattacataatcaattcactc--aatcaat 117412  T
Q  513 tttcgtcaaagtagaaccaaacattcactt 542  Q
    ||| |||||   |||||||||||| |||||    
T  117411 ttttgtcaacacagaaccaaacatacactt 117382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 410 - 506
Target Start/End: Complemental strand, 35139039 - 35138943
Alignment:
Q  410 ttcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactcaaa 506  Q
    ||||||||||||| ||||||||||| |  |||| |||||| ||||  | ||| ||| |||||| ||||||||| |||| |||||||||| |||||||    
T  35139039 ttcaactcactttcatatgaatgtatctgaacataaatcattttaccttcaactcaattttagacagaatcaagtttacataatcaattcactcaaa 35138943  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 412 - 535
Target Start/End: Original strand, 14671096 - 14671218
Alignment:
Q  412 caactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactcaaaatcaa 511  Q
    ||||||||||||| ||||||| | ||||||| |||| |||| |  | |||||||||||||| || ||||||||| | | |||||||| | |||||||||     
T  14671096 caactcacttttacatgaatgcatccaaacataaat-acttcacattcaattcacttttagccataatcaatttcacaaaatcaattcattcaaaatcat 14671194  T
Q  512 ttttcgtcaaagtagaaccaaaca 535  Q
    |||| ||||| | | |||||||||    
T  14671195 tttttgtcaatgcaaaaccaaaca 14671218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 483 - 536
Target Start/End: Original strand, 29822402 - 29822455
Alignment:
Q  483 ttttaaataatcaattaactcaaaatcaattttcgtcaaagtagaaccaaacat 536  Q
    ||||| ||||| |||| |||||||||||||||| ||||||||| ||||||||||    
T  29822402 ttttatataataaattcactcaaaatcaattttagtcaaagtaaaaccaaacat 29822455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 475 - 515
Target Start/End: Complemental strand, 12588064 - 12588024
Alignment:
Q  475 agaatcaattttaaataatcaattaactcaaaatcaatttt 515  Q
    ||||||||||||| ||||| |||||||||||||||||||||    
T  12588064 agaatcaattttacataattaattaactcaaaatcaatttt 12588024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 437 - 513
Target Start/End: Original strand, 14299422 - 14299498
Alignment:
Q  437 caaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactcaaaatcaatt 513  Q
    ||||||||||||||||||  | ||| |||||||||   ||||||||||||| | |||||||| ||||||||| ||||    
T  14299422 caaacacaaatcactttaccttcaactcacttttatctagaatcaattttacacaatcaattcactcaaaataaatt 14299498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 426 - 510
Target Start/End: Original strand, 29922985 - 29923069
Alignment:
Q  426 atgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactcaaaatca 510  Q
    ||||||||| ||||||| |||| |||| |  | ||| |||||| |||||| ||||||||||| |||||||||| | |||||||||    
T  29922985 atgaatgtatccaaacataaattacttcacattcaactcacttatagtcaaaatcaattttacataatcaattcattcaaaatca 29923069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 413 - 515
Target Start/End: Complemental strand, 27374307 - 27374206
Alignment:
Q  413 aactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaattaactcaaaatcaat 512  Q
    ||||||| |||| ||||| |||  ||| |||||||||||||| ||  || | |||||||||| |||||||||||| | |||||||| | || ||||||||    
T  27374307 aactcacatttacatgaaagtattcaatcacaaatcactttacttttaacttacttttagtcggaatcaattttacagaatcaattcattc-aaatcaat 27374209  T
Q  513 ttt 515  Q
    |||    
T  27374208 ttt 27374206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 410 - 496
Target Start/End: Complemental strand, 14130 - 14044
Alignment:
Q  410 ttcaactcacttttatatgaatgtaaccaaacacaaatcactttagttgcaattcacttttagtcagaatcaattttaaataatcaa 496  Q
    ||||||||||||| | ||||||||| ||||||| |||||||||||  | ||| ||| || |||  ||||||||||||| | ||||||    
T  14130 ttcaactcactttcacatgaatgtatccaaacataaatcactttaccttcaactcaattgtagcaagaatcaattttacaaaatcaa 14044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 412 - 513
Target Start/End: Original strand, 31900 - 32001
Alignment:
Q  412 caactcacttttatatgaatgtaaccaaacacaaatcactt-tagttgcaattcacttttagtcagaatcaattttaaataatcaattaactcaaaatca 510  Q
    ||||||||||||| || |||||| ||||||||||| ||||| |||||| |||| |||| ||  || |||||||| || ||||||||||   |||||||||    
T  31900 caactcacttttacataaatgtatccaaacacaaaccacttctagttggaatt-acttctaaccaaaatcaattctacataatcaattctatcaaaatca 31998  T
Q  511 att 513  Q
    |||    
T  31999 att 32001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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