View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0134_2D_low_45 (Length: 275)
Name: NF0134_2D_low_45
Description: NF0134_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0134_2D_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 40874797 - 40875052
Alignment:
| Q |
1 |
ccagcttgatgagactttccagcaacccgacccacgttaagtgttgtagcgactcgctcgagaccaccatacaaagcgttgcaaaacctcatcatatgct |
100 |
Q |
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| T |
40874797 |
ccagcttgatgagactttccagcaacccgacccacgttaagtgttgtagcgactcgctcgagaccaccatacaaagcgttgcaaaacctcatcatatgtt |
40874896 |
T |
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| Q |
101 |
tcatatcgtaaacattttttccaaacaatattgttaaaatatttaagaagtcctctaagcggttcggcaaattccttcgagtcaagatcttgaccaaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40874897 |
tcatatcgtaaacattttttccaaacaatattgttaaaatatttaagaagtcctctaagcggttcggcaaattccttcgagtcaagatcttgaccaaata |
40874996 |
T |
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| Q |
201 |
cccaaaatcataagcactgtgaaatgtgacccaaacaactgatttgttgaagacaa |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40874997 |
cccaaaatcataagcactgtgaaatgtgacccaaacaactgatttgttgaagacaa |
40875052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 40871699 - 40871954
Alignment:
| Q |
1 |
ccagcttgatgagactttccagcaacccgacccacgttaagtgttgtagcgactcgctcgagaccaccatacaaagcgttgcaaaacctcatcatatgct |
100 |
Q |
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||||||||||| ||||||||| || | |||| ||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| || | |
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| T |
40871699 |
ccagcttgatgcgactttccaacagctcgacacacattaagtgtactagcgactcgctcgagaccaccatacaaagcgttgcagaacctcatcatgtgtt |
40871798 |
T |
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| Q |
101 |
tcatatcgtaaacattttttccaaacaatattgttaaaatatttaagaagtcctctaagcggttcggcaaattccttcgagtcaagatcttgaccaaata |
200 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| || ||||| |
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| T |
40871799 |
tcatatcataaacattttttccaaataatattgttaaaatatttaaaaagtcctctaaacggttcggcagattccttcgagtcaagatcttcactaaata |
40871898 |
T |
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| Q |
201 |
cccaaaatcataagcactgtgaaatgtgacccaaacaactgatttgttgaagacaa |
256 |
Q |
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||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
40871899 |
cccaaaatcataagcgctgtgaaacgtgacccaaacaactgatttgttgaagacaa |
40871954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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