View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0134_2D_low_5 (Length: 636)
Name: NF0134_2D_low_5
Description: NF0134_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0134_2D_low_5 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 22 - 619
Target Start/End: Complemental strand, 24494766 - 24494169
Alignment:
| Q |
22 |
gtaacatgtgcagaggtggatgtataatcatctctatttccagcccaatcggcatcactgaatgcataaagattttgagaagaagtgtgcttcaagtgaa |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494766 |
gtaacatgtgcagaggtggatgtataatcatctctatttccagcccaatcggcatcactgaatgcataaagattttgagaagaagtgtgcttcaagtgaa |
24494667 |
T |
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| Q |
122 |
gtccatgaaacatggtggctttgagatatcgaagaagtcttttcaaggatgtaaagtgtgtagatgatggatgttgcatgaattgtgcaagcttatttac |
221 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494666 |
gtccatgaaacatggtggctttgagatatcaaagaagtcttttcaaggctgtaaagtgtgtagatgatggatgttgcatgaattgtgcaagcttatttac |
24494567 |
T |
|
| Q |
222 |
agtgtaggctatgtcaggccttgtcatggataaatattgtagagcccctatgacgcttctgtattccgtactatctgctgcacttgcgccatcagattta |
321 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24494566 |
agtgtaggctatgtcaggccttgtcatggaaaaatattgtagagcccctatgacgcttctgtattccgtactatctgctacacttgcgccatcagattta |
24494467 |
T |
|
| Q |
322 |
gtaagaggagaggatgtagacatcggtgaatggacaatctttgcatctttcatctttgtgcggtcaagtagatcatgaatatatttatgttgactcagaa |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494466 |
gtaagaggagaggatgtagacatcggtgaatggacaatctttgcatctttcatctttgtgcggtcaagtagatcatgaatatatttatgttgactcagaa |
24494367 |
T |
|
| Q |
422 |
ataatccttgagtagtaggaatgacttcaacaccaagaaagaagtgaatggaacctaagtctttgatggaaaacatagtgcctagtgttgaaatgcactt |
521 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494366 |
ataatccttgagtagtaggaatgacttcaacaccaagaaagaagtgaatggaacctaagtctttgatggaaaacatagtgcctagtgttgaaatgcactt |
24494267 |
T |
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| Q |
522 |
agcaattgcatggttgttgttgcctgtaattaaaatatcatcaacatataccaaagtgtagagtttgacatcacctttgagatagatgaataatgatg |
619 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494266 |
agcaattgcatggttgttgttgccagtaattaaaatatcatcaacatataccaaagtgtagagtttgacatcacctttgagatagatgaataatgatg |
24494169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 22 - 619
Target Start/End: Complemental strand, 94116 - 93519
Alignment:
| Q |
22 |
gtaacatgtgcagaggtggatgtataatcatctctatttccagcccaatcggcatcactgaatgcataaagattttgagaagaagtgtgcttcaagtgaa |
121 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
94116 |
gtaacatgtgcagaggtggatgtataatcatctcgatttccagcccaatcggcatcactgaatgcatatagattttgagaagaagtgcacttcaagtgaa |
94017 |
T |
|
| Q |
122 |
gtccatgaaacatggtggctttgagatatcgaagaagtcttttcaaggatgtaaagtgtgtagatgatggatgttgcatgaattgtgcaagcttatttac |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |
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| T |
94016 |
gtccatgaaacatggtggctttgagatatcgaagaagtcttttcaaggttgtaaagtgtgtagatgatggatattgcatgaactgtgcaaacttatttac |
93917 |
T |
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| Q |
222 |
agtgtaggctatgtcaggccttgtcatggataaatattgtagagcccctatgacgcttctgtattccgtactatctgctgcacttgcgccatcagattta |
321 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
93916 |
agtgtaggctatgtcaggccttgtcatggacaaatattgtagagcccctatgacgcttctgtattccgtactatctgcttcacttgcgccatcagattta |
93817 |
T |
|
| Q |
322 |
gtaagaggagaggatgtagacatcggtgaatggacaatctttgcatctttcatctttgtgcggtcaagtagatcatgaatatatttatgttgactcagaa |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
93816 |
gtaagaggagaggatgtagacatcggtgaatggacaatctttgcatctttcatctttgtgcggtcaagtagatcatgaatatatttatgttgactcagaa |
93717 |
T |
|
| Q |
422 |
ataatccttgagtagtaggaatgacttcaacaccaagaaagaagtgaatggaacctaagtctttgatggaaaacatagtgcctagtgttgaaatgcactt |
521 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
93716 |
ataatccttgagtagtaggaatgacttcaacaccaagaaagaagtgaatggaacctaagtctttgatggaaaacatagtgcctagtgttgaaatgcactt |
93617 |
T |
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| Q |
522 |
agcaattgcatggttgttgttgcctgtaattaaaatatcatcaacatataccaaagtgtagagtttgacatcacctttgagatagatgaataatgatg |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
93616 |
agcaattgcatggttgttgttgcctgtaattaaaatatcatcaacatataccaaagtgtagagtttgacatcacctttgagatagatgaataatgatg |
93519 |
T |
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