View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0134_2D_low_55 (Length: 262)
Name: NF0134_2D_low_55
Description: NF0134_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0134_2D_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 155042 - 155288
Alignment:
| Q |
1 |
ttggtcatgttggttctcctcatttctaagacagtggctgattgttttaacaaaggtgtttatgatcagattgtggcgttgaagggactaccttatatgg |
100 |
Q |
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| T |
155042 |
ttggtcatgttggttctcctcatttctaagacagtggctgattgttttaacaaaggtgtttatgatcagattgtggcgttgaagggactaccttatatgg |
155141 |
T |
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| Q |
101 |
aagcacatgcagagccatacatgaggaatttagttgcaggggatgttgtttctggtccactgttttctttttgtgggatcgaaaaagtggggaatatatt |
200 |
Q |
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| T |
155142 |
aagcacatgcagagccatacatgaggaatttagttgcaggggatgttgtttctggtccactgttttctttttgtgggatcgaaaaagtggggaatatatt |
155241 |
T |
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| Q |
201 |
gcacgctttgaaagtgacagaacatcacggatttccagtagttgatg |
247 |
Q |
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| T |
155242 |
gcacgctttgaaagtgacagaacatcacggatttccagtagttgatg |
155288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 56469512 - 56469295
Alignment:
| Q |
1 |
ttggtcatgttggttctcctcatttctaagacagtggctgattgttttaacaaaggtgtttatgatcagattgtggcgttgaagggactaccttatatgg |
100 |
Q |
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||||||||||| ||||||||||| || ||| | ||||| ||||||||||||||||||||||||||||| || |||| ||||||| | |||||| ||| |
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| T |
56469512 |
ttggtcatgttagttctcctcatctcaaagtctgtggcagattgttttaacaaaggtgtttatgatcaaatagtggaaatgaaggggttgccttatttgg |
56469413 |
T |
|
| Q |
101 |
aagcacatgcagagccatacatgaggaatttagttgcaggggatgttgtttctggtccactgttttctttttgtgggatcgaaaaagtggggaatatatt |
200 |
Q |
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| T |
56469412 |
aagtgcatgcagaaccgtacatgaggcatttagttgccggtgatgttgtttctggtccactgtttacattctctggtattgaaaaagtggggaatattgt |
56469313 |
T |
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| Q |
201 |
gcacgctttgaaagtgac |
218 |
Q |
| |
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|||| |||| || ||||| |
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| T |
56469312 |
gcacactttaaaggtgac |
56469295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 200
Target Start/End: Complemental strand, 24329234 - 24329119
Alignment:
| Q |
85 |
ggactaccttatatggaagcacatgcagagccatacatgaggaatttagttgcaggggatgttgtttctggtccactgttttctttttgtgggatcgaaa |
184 |
Q |
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||||| |||||| ||||||||||||| || || |||||||||||| ||| | || | |||||||| || |||||| || | | |||| ||| ||||||| |
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| T |
24329234 |
ggacttccttatttggaagcacatgccgaaccttacatgaggaatatagctacacgtgatgttgtctcgggtccattgatgaccttttctggcatcgaaa |
24329135 |
T |
|
| Q |
185 |
aagtggggaatatatt |
200 |
Q |
| |
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| || ||||||||||| |
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| T |
24329134 |
aggttgggaatatatt |
24329119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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