View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0134_2D_low_60 (Length: 256)

Name: NF0134_2D_low_60
Description: NF0134_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0134_2D_low_60
NF0134_2D_low_60
[»] chr5 (3 HSPs)
chr5 (1-69)||(14417550-14417619)
chr5 (175-225)||(14417350-14417400)
chr5 (58-96)||(14417479-14417517)
[»] chr7 (5 HSPs)
chr7 (6-69)||(25035874-25035937)
chr7 (1-60)||(17711015-17711074)
chr7 (1-69)||(24511427-24511495)
chr7 (181-227)||(25035656-25035702)
chr7 (59-96)||(25035785-25035822)
[»] chr4 (1 HSPs)
chr4 (175-227)||(44512595-44512647)
[»] chr1 (1 HSPs)
chr1 (2-43)||(43531964-43532005)


Alignment Details
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 14417550 - 14417619
Alignment:
Q  1 aggcatggaggcatatattaaaaggaggtgcatgtaacactttct-aaaaaatgtcacataaaaaatgtt 69  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||    
T  14417550 aggcatggaggcatatattaaaaggaggtgcatgtaacactttttaaaaaaatgtcacataaaagatgtt 14417619  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 14417400 - 14417350
Alignment:
Q  175 gccctgtgtctagtgtatgagtggatgcaataataaactttatgatttgag 225  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14417400 gccctgtgtctagtgtatgagtggatgcaataataaactttgtgatttgag 14417350  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 96
Target Start/End: Complemental strand, 14417517 - 14417479
Alignment:
Q  58 ataaaaaatgttacatgcacttcattcgttttctctcgc 96  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14417517 ataaaaaatgttacatgcacttcattcgttttctctcgc 14417479  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 25035874 - 25035937
Alignment:
Q  6 tggaggcatatattaaaaggaggtgcatgtaacactttctaaaaaatgtcacataaaaaatgtt 69  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  25035874 tggaagcacatattaaaaggaggtgcatgtaacactttctaaaaaatgtcacatataagatgtt 25035937  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 17711015 - 17711074
Alignment:
Q  1 aggcatggaggcatatattaaaaggaggtgcatgtaacactttctaaaaaatgtcacata 60  Q
    ||||||||| ||| ||||||||||||||||||| |||||||||||| |||||||||||||    
T  17711015 aggcatggaagcacatattaaaaggaggtgcatctaacactttctacaaaatgtcacata 17711074  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 24511427 - 24511495
Alignment:
Q  1 aggcatggaggcatatattaaaaggaggtgcatgtaacactttctaaaaaatgtcacataaaaaatgtt 69  Q
    |||| |||| |||| || |||||||||||| |||||||||||| |||||||||||||||| || |||||    
T  24511427 aggcgtggaagcatgtaataaaaggaggtgtatgtaacactttttaaaaaatgtcacatataatatgtt 24511495  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 25035702 - 25035656
Alignment:
Q  181 tgtctagtgtatgagtggatgcaataataaactttatgatttgagga 227  Q
    |||||||||||||||||||||||||||||| || | |||||||||||    
T  25035702 tgtctagtgtatgagtggatgcaataataagctctgtgatttgagga 25035656  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 25035822 - 25035785
Alignment:
Q  59 taaaaaatgttacatgcacttcattcgttttctctcgc 96  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  25035822 taaaaaatgttacacgcacttcattcgttttatctcgc 25035785  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 44512595 - 44512647
Alignment:
Q  175 gccctgtgtctagtgtatgagtggatgcaataataaactttatgatttgagga 227  Q
    |||||||||| ||||||||||||| |||||||||||  | |||||||||||||    
T  44512595 gccctgtgtcaagtgtatgagtgggtgcaataataagttctatgatttgagga 44512647  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 43531964 - 43532005
Alignment:
Q  2 ggcatggaggcatatattaaaaggaggtgcatgtaacacttt 43  Q
    |||||||| ||| |||||||||||||||| ||||||||||||    
T  43531964 ggcatggaagcacatattaaaaggaggtggatgtaacacttt 43532005  T

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