View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0134_2D_low_69 (Length: 226)

Name: NF0134_2D_low_69
Description: NF0134_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0134_2D_low_69
NF0134_2D_low_69
[»] chr6 (5 HSPs)
chr6 (18-226)||(13855547-13855755)
chr6 (18-138)||(13851773-13851893)
chr6 (137-191)||(33303630-33303684)
chr6 (138-187)||(13851711-13851760)
chr6 (137-169)||(9195788-9195820)
[»] chr1 (2 HSPs)
chr1 (138-191)||(34298407-34298460)
chr1 (138-186)||(10572624-10572672)
[»] chr8 (1 HSPs)
chr8 (82-138)||(34897122-34897178)
[»] chr7 (4 HSPs)
chr7 (89-140)||(38143258-38143309)
chr7 (137-175)||(927871-927909)
chr7 (138-186)||(27945017-27945065)
chr7 (137-181)||(30516391-30516435)
[»] chr5 (1 HSPs)
chr5 (138-187)||(22423847-22423896)
[»] chr4 (2 HSPs)
chr4 (138-175)||(43061708-43061745)
chr4 (138-186)||(22440635-22440683)
[»] chr3 (2 HSPs)
chr3 (138-191)||(12674536-12674589)
chr3 (137-173)||(35335590-35335626)
[»] scaffold0122 (1 HSPs)
scaffold0122 (146-186)||(8642-8682)
[»] chr2 (1 HSPs)
chr2 (137-173)||(37497109-37497145)


Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 13855755 - 13855547
Alignment:
Q  18 acatcaatagcataactttctgttttggttctaaattttggatctagcttatagttaagtaacaatgaagtacgaacactcctcgggttacgtgtgtcgg 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  13855755 acatcaatggcataactttctgttttggttctaaattttggatctagcttatagttaagtaactatgaagtacgaacactcctcgggttaggtgtgtcgg 13855656  T
Q  118 acatcgacacatataattacattttctcaaattattagtagtgtcgatgtgtcagtttccatgtcgtgtttggtaacgggtgtctatatccgttcttcat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13855655 acatcgacacatataattacattttctcaaattattagtagtgtcgatgtgtcagtttccatgtcgtgtttagtaacgggtgtctatatccgttcttcat 13855556  T
Q  218 aggtatact 226  Q
    |||||||||    
T  13855555 aggtatact 13855547  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 13851893 - 13851773
Alignment:
Q  18 acatcaatagcataactttctgttttggttctaaattttggatctagcttatagttaagtaacaatgaagtacgaacactcctcgggttacgtgtgtcgg 117  Q
    |||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |   ||| ||||| ||||| | ||||| |    
T  13851893 acatcaaaggcataactttctgttttggttcttaattttggatctagcttatagttaagtaactatgaagcatagacattcctcaggttaggcgtgtcag 13851794  T
Q  118 acatcgacacatataattaca 138  Q
    |||||||||||||||||||||    
T  13851793 acatcgacacatataattaca 13851773  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 33303684 - 33303630
Alignment:
Q  137 cattttctcaaattattagtagtgtcgatgtgtcagtttccatgtcgtgtttggt 191  Q
    |||||| ||||||||||| |||||||||||||||||| ||| | |||||| ||||    
T  33303684 cattttttcaaattattattagtgtcgatgtgtcagtgtccgtatcgtgtctggt 33303630  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 13851760 - 13851711
Alignment:
Q  138 attttctcaaattattagtagtgtcgatgtgtcagtttccatgtcgtgtt 187  Q
    ||||||||||||||||||  ||||||| |||||||| ||| |||||||||    
T  13851760 attttctcaaattattagcggtgtcgacgtgtcagtgtccgtgtcgtgtt 13851711  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 9195788 - 9195820
Alignment:
Q  137 cattttctcaaattattagtagtgtcgatgtgt 169  Q
    ||||||||||||||||||| |||||||||||||    
T  9195788 cattttctcaaattattaggagtgtcgatgtgt 9195820  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 34298460 - 34298407
Alignment:
Q  138 attttctcaaattattagtagtgtcgatgtgtcagtttccatgtcgtgtttggt 191  Q
    ||||||||||||||||||| |||||| ||||||||||||| |||||||| ||||    
T  34298460 attttctcaaattattagtggtgtcggtgtgtcagtttccgtgtcgtgtctggt 34298407  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 10572624 - 10572672
Alignment:
Q  138 attttctcaaattattagtagtgtcgatgtgtcagtttccatgtcgtgt 186  Q
    ||||||||||||||||||| ||||||  |||||||| | ||||||||||    
T  10572624 attttctcaaattattagtggtgtcggcgtgtcagtgttcatgtcgtgt 10572672  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 34897178 - 34897122
Alignment:
Q  82 atgaagtacgaacactcctcgggttacgtgtgtcggacatcgacacatataattaca 138  Q
    |||||| ||| ||||||||||  |||| |||||| ||||||||||||||||||||||    
T  34897178 atgaagcacggacactcctcgaattacatgtgtccgacatcgacacatataattaca 34897122  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 38143309 - 38143258
Alignment:
Q  89 acgaacactcctcgggttacgtgtgtcggacatcgacacatataattacatt 140  Q
    ||||||||||||||| ||| ||||||| |||| | |||||||||||||||||    
T  38143309 acgaacactcctcggattaggtgtgtctgacaccaacacatataattacatt 38143258  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 927871 - 927909
Alignment:
Q  137 cattttctcaaattattagtagtgtcgatgtgtcagttt 175  Q
    |||||||||||||||||| ||||||||| ||||||||||    
T  927871 cattttctcaaattattattagtgtcgacgtgtcagttt 927909  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 27945065 - 27945017
Alignment:
Q  138 attttctcaaattattagtagtgtcgatgtgtcagtttccatgtcgtgt 186  Q
    ||||||||||||||||||| ||||||  |||||||| ||| ||||||||    
T  27945065 attttctcaaattattagtggtgtcggcgtgtcagtgtccgtgtcgtgt 27945017  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 30516391 - 30516435
Alignment:
Q  137 cattttctcaaattattagtagtgtcgatgtgtcagtttccatgt 181  Q
    |||||||||||||||||  ||||||||| |||||||| |||||||    
T  30516391 cattttctcaaattattgttagtgtcgacgtgtcagtgtccatgt 30516435  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 22423847 - 22423896
Alignment:
Q  138 attttctcaaattattagtagtgtcgatgtgtcagtttccatgtcgtgtt 187  Q
    |||||||||||||||||||||||||   |||||||| ||| |||||||||    
T  22423847 attttctcaaattattagtagtgtcagggtgtcagtatccgtgtcgtgtt 22423896  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 43061708 - 43061745
Alignment:
Q  138 attttctcaaattattagtagtgtcgatgtgtcagttt 175  Q
    ||||||||||||||||| |||||||||||| |||||||    
T  43061708 attttctcaaattattactagtgtcgatgtttcagttt 43061745  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 22440635 - 22440683
Alignment:
Q  138 attttctcaaattattagtagtgtcgatgtgtcagtttccatgtcgtgt 186  Q
    |||||||||||||||||   |||||||||| ||||| ||||||||||||    
T  22440635 attttctcaaattattaacggtgtcgatgtatcagtgtccatgtcgtgt 22440683  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 12674536 - 12674589
Alignment:
Q  138 attttctcaaattattagtagtgtcgatgtgtcagtttccatgtcgtgtttggt 191  Q
    |||||||||||||||||| ||||||| ||||||| | ||| |||||||| ||||    
T  12674536 attttctcaaattattagcagtgtcggtgtgtcaatgtccgtgtcgtgtctggt 12674589  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 35335626 - 35335590
Alignment:
Q  137 cattttctcaaattattagtagtgtcgatgtgtcagt 173  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  35335626 cattttctcaaattattactagtgtctatgtgtcagt 35335590  T

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Target: scaffold0122 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 8682 - 8642
Alignment:
Q  146 aaattattagtagtgtcgatgtgtcagtttccatgtcgtgt 186  Q
    |||||||||| |||||||| |||||||| ||||||||||||    
T  8682 aaattattagaagtgtcgacgtgtcagtgtccatgtcgtgt 8642  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 37497145 - 37497109
Alignment:
Q  137 cattttctcaaattattagtagtgtcgatgtgtcagt 173  Q
    ||||||||||||||||||  |||||||||||||||||    
T  37497145 cattttctcaaattattatcagtgtcgatgtgtcagt 37497109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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