View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0134_2D_low_73 (Length: 224)

Name: NF0134_2D_low_73
Description: NF0134_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0134_2D_low_73
NF0134_2D_low_73
[»] chr1 (3 HSPs)
chr1 (1-209)||(8436155-8436362)
chr1 (1-96)||(10510870-10510964)
chr1 (19-84)||(25001324-25001389)
[»] chr3 (2 HSPs)
chr3 (1-86)||(48757197-48757282)
chr3 (18-85)||(43377283-43377350)
[»] chr7 (3 HSPs)
chr7 (1-79)||(33493464-33493542)
chr7 (1-86)||(43974831-43974919)
chr7 (29-83)||(10227604-10227658)
[»] chr4 (2 HSPs)
chr4 (1-78)||(40701215-40701291)
chr4 (14-96)||(29567607-29567687)
[»] scaffold0010 (1 HSPs)
scaffold0010 (1-65)||(152897-152960)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 8436362 - 8436155
Alignment:
Q  1 agtgaaaatgagggagtgttcttgaatcctatgtggcaattattggcctacaaaaattaacttgagaacatcaacattgttctagcggtggagatgatca 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8436362 agtgaaaatgagggagtgatcttgaatcctatgtggcaattattggcctacaaaaattaacttgagaacatcaacattgttctagcggtggagatgatca 8436263  T
Q  101 gaacattttcagagatagttttgattatcgtgcacgatcttgttcttcatccttctggtttagccattggaatttatcttggctcgcccgtcgctcttat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8436262 gaacattttcagagatagttttgattatcgtgcacgatcttgttcttcatccttctggtttagccattggaa-ttatcttggctcgcccgtcgctcttat 8436164  T
Q  201 tcctgatgt 209  Q
    |||| ||||    
T  8436163 tccttatgt 8436155  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 10510964 - 10510870
Alignment:
Q  1 agtgaaaatgagggagtgttcttgaatcctatgtggcaattattggcctacaaaaattaacttgagaacatcaacattgttctagcggtggagatg 96  Q
    ||||||||||||| |  |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  10510964 agtgaaaatgaggaaa-gttcttgaattctatgtggcaattattggcccacaaaaattaacttgagaacatcaacattgttctagcggttgagatg 10510870  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 25001324 - 25001389
Alignment:
Q  19 ttcttgaatcctatgtggcaattattggcctacaaaaattaacttgagaacatcaacattgttcta 84  Q
    ||||||||| |||||||| ||||||||||| | |||||||| ||| |||||||||| ||| |||||    
T  25001324 ttcttgaattctatgtggtaattattggcccaaaaaaattaccttaagaacatcaatatttttcta 25001389  T

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Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 48757197 - 48757282
Alignment:
Q  1 agtgaaaatgagggagtgttcttgaatcctatgtggcaattattggcctacaaaaattaacttgagaacatcaacattgttctagc 86  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||| |||||||    
T  48757197 agtgaaaatgaagaagtgttcttgaatcctatgtagcaattattggcccacaaaaattaacatgagaacatcaacattattctagc 48757282  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 43377283 - 43377350
Alignment:
Q  18 gttcttgaatcctatgtggcaattattggcctacaaaaattaacttgagaacatcaacattgttctag 85  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  43377283 gttcttaaatcctatgtggcaattattggcccacaaaaattaacttgagaacatcaacattgttctag 43377350  T

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Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 33493542 - 33493464
Alignment:
Q  1 agtgaaaatgagggagtgttcttgaatcctatgtggcaattattggcctacaaaaattaacttgagaacatcaacattg 79  Q
    ||||||||||| ||| ||||||| ||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||    
T  33493542 agtgaaaatgatggattgttcttcaatcctaagtggcaattaatggcccacaaaaattaacttgagaacatcaacattg 33493464  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 43974919 - 43974831
Alignment:
Q  1 agtgaaaatgagggagtgttcttgaatccta--tgtggcaattattggcctacaaaaattaacttgagaacatc-aacattgttctagc 86  Q
    ||||||||||||||||||||||| |||||||  ||||| ||||| ||||| ||||||||||||||||||| ||| ||||||||||||||    
T  43974919 agtgaaaatgagggagtgttcttaaatcctatgtgtggtaattagtggcccacaaaaattaacttgagaatatcaaacattgttctagc 43974831  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 10227604 - 10227658
Alignment:
Q  29 ctatgtggcaattattggcctacaaaaattaacttgagaacatcaacattgttct 83  Q
    |||||||||||||||||||| ||||||||||  ||||||||||||| ||||||||    
T  10227604 ctatgtggcaattattggcccacaaaaattacattgagaacatcaatattgttct 10227658  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 40701291 - 40701215
Alignment:
Q  1 agtgaaaatgagggagtgttcttgaatcctatgtggcaattattggcctacaaaaattaacttgagaacatcaacatt 78  Q
    ||||||||||||| |  ||| ||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||    
T  40701291 agtgaaaatgaggaaa-gtttttgaatcctatgtggtaattattggcccacaaaaattaacttgagaacattaacatt 40701215  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 29567607 - 29567687
Alignment:
Q  14 gagtgttcttgaatcctatgtggcaattattggcctacaaaaattaacttgagaacatcaacattgttctagcggtggagatg 96  Q
    ||||||||||||||| ||||||| ||| |||| || ||||||||||||||  |||||||||||||||||||||  ||||||||    
T  29567607 gagtgttcttgaatcttatgtggtaatcattgacccacaaaaattaactt--gaacatcaacattgttctagcattggagatg 29567687  T

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Target: scaffold0010 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 152960 - 152897
Alignment:
Q  1 agtgaaaatgagggagtgttcttgaatcctatgtggcaattattggcctacaaaaattaacttga 65  Q
    ||||||||||||| |  ||||||||||||||| |||||||| |||||| ||||||||||||||||    
T  152960 agtgaaaatgaggaaa-gttcttgaatcctatatggcaattgttggcccacaaaaattaacttga 152897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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