View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0134_2D_low_81 (Length: 213)

Name: NF0134_2D_low_81
Description: NF0134_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0134_2D_low_81
NF0134_2D_low_81
[»] chr5 (16 HSPs)
chr5 (13-192)||(2184020-2184199)
chr5 (151-188)||(10476238-10476275)
chr5 (154-186)||(10072657-10072689)
chr5 (152-188)||(40305668-40305704)
chr5 (157-188)||(11757113-11757144)
chr5 (152-186)||(22023571-22023605)
chr5 (151-188)||(7544346-7544383)
chr5 (156-188)||(1658023-1658055)
chr5 (152-188)||(5688600-5688636)
chr5 (152-188)||(14245256-14245292)
chr5 (152-188)||(16938477-16938513)
chr5 (152-188)||(34981020-34981056)
chr5 (152-184)||(37551619-37551651)
chr5 (152-184)||(37607108-37607140)
chr5 (152-184)||(37654449-37654481)
chr5 (152-184)||(37779317-37779349)
[»] chr4 (14 HSPs)
chr4 (144-188)||(37711333-37711377)
chr4 (152-188)||(54935279-54935315)
chr4 (151-186)||(56135933-56135968)
chr4 (151-189)||(5730827-5730865)
chr4 (149-187)||(17182696-17182734)
chr4 (154-188)||(41174555-41174589)
chr4 (154-188)||(53260718-53260752)
chr4 (150-187)||(45741886-45741923)
chr4 (150-186)||(2916965-2917001)
chr4 (151-187)||(26166934-26166970)
chr4 (156-188)||(27735955-27735987)
chr4 (152-188)||(37761674-37761710)
chr4 (152-188)||(49735702-49735738)
chr4 (152-188)||(54320644-54320680)
[»] chr8 (11 HSPs)
chr8 (150-188)||(3726859-3726897)
chr8 (152-189)||(8815139-8815176)
chr8 (152-189)||(31738632-31738669)
chr8 (152-188)||(43732897-43732933)
chr8 (154-189)||(41103504-41103539)
chr8 (154-188)||(31543072-31543106)
chr8 (150-188)||(40632992-40633030)
chr8 (152-189)||(11785735-11785772)
chr8 (152-188)||(2481983-2482019)
chr8 (154-186)||(9718489-9718521)
chr8 (152-188)||(34196517-34196553)
[»] chr7 (11 HSPs)
chr7 (154-188)||(47391066-47391100)
chr7 (152-188)||(33519258-33519294)
chr7 (152-188)||(36267551-36267587)
chr7 (152-188)||(41496955-41496991)
chr7 (152-188)||(48881556-48881592)
chr7 (151-188)||(16833908-16833945)
chr7 (151-188)||(41008388-41008425)
chr7 (154-186)||(17853072-17853104)
chr7 (152-188)||(25887190-25887226)
chr7 (149-189)||(33655317-33655357)
chr7 (152-188)||(40196530-40196566)
[»] chr1 (9 HSPs)
chr1 (151-189)||(2470727-2470765)
chr1 (154-186)||(35349466-35349498)
chr1 (152-188)||(40094931-40094967)
chr1 (149-188)||(20607427-20607466)
chr1 (151-188)||(1085700-1085737)
chr1 (151-188)||(12234220-12234257)
chr1 (151-188)||(38509891-38509928)
chr1 (152-188)||(26941043-26941079)
chr1 (152-188)||(30010330-30010366)
[»] scaffold0067 (1 HSPs)
scaffold0067 (150-187)||(39182-39219)
[»] chr6 (11 HSPs)
chr6 (152-188)||(14515681-14515717)
chr6 (154-189)||(1390319-1390354)
chr6 (149-188)||(9051742-9051781)
chr6 (154-184)||(4097504-4097534)
chr6 (150-188)||(15323221-15323259)
chr6 (150-188)||(15353360-15353398)
chr6 (155-189)||(16737997-16738031)
chr6 (154-188)||(30487306-30487340)
chr6 (152-188)||(4097723-4097759)
chr6 (154-186)||(21606854-21606886)
chr6 (149-189)||(21607053-21607093)
[»] chr3 (13 HSPs)
chr3 (152-187)||(24560428-24560463)
chr3 (151-189)||(18654597-18654635)
chr3 (150-188)||(24253932-24253970)
chr3 (152-186)||(30200096-30200130)
chr3 (154-188)||(34641200-34641234)
chr3 (151-189)||(41039947-41039985)
chr3 (151-187)||(10943611-10943647)
chr3 (150-186)||(34640998-34641034)
chr3 (154-186)||(37102159-37102191)
chr3 (152-188)||(37102349-37102385)
chr3 (150-186)||(41414281-41414317)
chr3 (152-188)||(42772232-42772268)
chr3 (150-186)||(48683816-48683852)
[»] chr2 (5 HSPs)
chr2 (154-188)||(23748305-23748339)
chr2 (151-188)||(35736172-35736209)
chr2 (152-188)||(17379844-17379880)
chr2 (155-187)||(36046205-36046237)
chr2 (152-188)||(36347751-36347787)


Alignment Details
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 13 - 192
Target Start/End: Complemental strand, 2184199 - 2184020
Alignment:
Q  13 acatcaacaatgcaagaagttggacatgaatcaagtctcctctagtgataatactattgacgacttggcatcagttcccttagctaagtactaacatatt 112  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  2184199 acatcaacaacgcaagaagttggacatgaatcaagtctcctctagtgataatactattgacaacttggcatcagttcccttagctaagtactaccatatt 2184100  T
Q  113 gcaaaccaatctcgcaaaatttaaagtccaaaaatccttttagggtgtgtttggatggagggtttaagaggggaagatag 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2184099 gcaaaccaatctcgcaaaatttaaagtccaaaaatccttttagggtgtgtttggatggagggtttaagaggggaagatag 2184020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 10476275 - 10476238
Alignment:
Q  151 tttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    |||||||||||||||||||||||||||| |||||||||    
T  10476275 tttagggtgtgtttggatggagggtttaggaggggaag 10476238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 10072657 - 10072689
Alignment:
Q  154 agggtgtgtttggatggagggtttaagagggga 186  Q
    |||||||||||||||||||||||||||||||||    
T  10072657 agggtgtgtttggatggagggtttaagagggga 10072689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 40305668 - 40305704
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||||||||||||| |||||||||    
T  40305668 ttagggtgtgtttggatggagggtttaggaggggaag 40305704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 188
Target Start/End: Complemental strand, 11757144 - 11757113
Alignment:
Q  157 gtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||||||||||||||||||    
T  11757144 gtgtgtttggatggagggtttaagaggggaag 11757113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 186
Target Start/End: Complemental strand, 22023605 - 22023571
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagagggga 186  Q
    ||||||||||||||||||||||||||| |||||||    
T  22023605 ttagggtgtgtttggatggagggtttaggagggga 22023571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 7544383 - 7544346
Alignment:
Q  151 tttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  7544383 tttaaggtgtgtttggatggagggtttaggaggggaag 7544346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 188
Target Start/End: Complemental strand, 1658055 - 1658023
Alignment:
Q  156 ggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||||||||| |||||||||    
T  1658055 ggtgtgtttggatggagggtttaggaggggaag 1658023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 5688636 - 5688600
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  5688636 ttagggtgtgtttggattgagggtttaggaggggaag 5688600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 14245292 - 14245256
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  14245292 ttagggtgtgtttggattgagggtttaggaggggaag 14245256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 16938477 - 16938513
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  16938477 ttagggtgtgtttggattgagggtttaggaggggaag 16938513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 34981056 - 34981020
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    |||||||||||||  ||||||||||||||||||||||    
T  34981056 ttagggtgtgttttaatggagggtttaagaggggaag 34981020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 37551651 - 37551619
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggg 184  Q
    ||||||||||||||||||||||||||| |||||    
T  37551651 ttagggtgtgtttggatggagggtttacgaggg 37551619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 37607140 - 37607108
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggg 184  Q
    ||||||||||||||||||||||||||| |||||    
T  37607140 ttagggtgtgtttggatggagggtttacgaggg 37607108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 37654481 - 37654449
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggg 184  Q
    ||||||||||||||||||||||||||| |||||    
T  37654481 ttagggtgtgtttggatggagggtttacgaggg 37654449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 37779349 - 37779317
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggg 184  Q
    ||||||||||||||||||||||||||| |||||    
T  37779349 ttagggtgtgtttggatggagggtttacgaggg 37779317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 37711377 - 37711333
Alignment:
Q  144 aaatccttttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  37711377 aaatccttttagggtgtgtttggatggagggtttaggaggggaag 37711333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 54935315 - 54935279
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||||||||||||| |||||||||    
T  54935315 ttagggtgtgtttggatggagggtttaggaggggaag 54935279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 186
Target Start/End: Complemental strand, 56135968 - 56135933
Alignment:
Q  151 tttagggtgtgtttggatggagggtttaagagggga 186  Q
    |||||||||||||||||||||||||||| |||||||    
T  56135968 tttagggtgtgtttggatggagggtttaggagggga 56135933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 5730827 - 5730865
Alignment:
Q  151 tttagggtgtgtttggatggagggtttaagaggggaaga 189  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  5730827 tttagggtgtgtttggatggagggtttaggagggaaaga 5730865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 17182734 - 17182696
Alignment:
Q  149 cttttagggtgtgtttggatggagggtttaagaggggaa 187  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  17182734 cttttagggtgtgtttggattgagggtttatgaggggaa 17182696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 188
Target Start/End: Complemental strand, 41174589 - 41174555
Alignment:
Q  154 agggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||||||||||| |||||||||    
T  41174589 agggtgtgtttggatggagggtttaggaggggaag 41174555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 188
Target Start/End: Original strand, 53260718 - 53260752
Alignment:
Q  154 agggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||||||||||| |||||||||    
T  53260718 agggtgtgtttggatggagggtttaggaggggaag 53260752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 45741886 - 45741923
Alignment:
Q  150 ttttagggtgtgtttggatggagggtttaagaggggaa 187  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  45741886 ttttagggtgtgtttggattgagggtttaggaggggaa 45741923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 2916965 - 2917001
Alignment:
Q  150 ttttagggtgtgtttggatggagggtttaagagggga 186  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  2916965 ttttagggtgtgtttagatgtagggtttaagagggga 2917001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 26166934 - 26166970
Alignment:
Q  151 tttagggtgtgtttggatggagggtttaagaggggaa 187  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  26166934 tttagggtgtgtttggattgagggtttaggaggggaa 26166970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 188
Target Start/End: Complemental strand, 27735987 - 27735955
Alignment:
Q  156 ggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||||||||| |||||||||    
T  27735987 ggtgtgtttggatggagggtttaggaggggaag 27735955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 37761710 - 37761674
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  37761710 ttagggtgtgtttggatggaggatttaaaaggggaag 37761674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 49735738 - 49735702
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  49735738 ttagggtgtgtttggattgagggtttaggaggggaag 49735702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 54320680 - 54320644
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  54320680 ttagggtgtgtttggattgagggtttaggaggggaag 54320644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 3726859 - 3726897
Alignment:
Q  150 ttttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  3726859 ttttagggtgtgtttggatggagggtttaggaggggaag 3726897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 189
Target Start/End: Original strand, 8815139 - 8815176
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggggaaga 189  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  8815139 ttagggtgtgtttggatggagggtttaggaggggaaga 8815176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 31738669 - 31738632
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggggaaga 189  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  31738669 ttagggtgtgtttggatggagggtttaggaggggaaga 31738632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 43732933 - 43732897
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||||||||||||| |||||||||    
T  43732933 ttagggtgtgtttggatggagggtttaggaggggaag 43732897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 189
Target Start/End: Original strand, 41103504 - 41103539
Alignment:
Q  154 agggtgtgtttggatggagggtttaagaggggaaga 189  Q
    ||||||||||||||||||||||||| ||||||||||    
T  41103504 agggtgtgtttggatggagggtttaggaggggaaga 41103539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 188
Target Start/End: Original strand, 31543072 - 31543106
Alignment:
Q  154 agggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||| |||||||||||||||||||||||||||||    
T  31543072 agggtatgtttggatggagggtttaagaggggaag 31543106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 40632992 - 40633030
Alignment:
Q  150 ttttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  40632992 ttttagggtgtgtttgaatggagggtttaggaggggaag 40633030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 11785772 - 11785735
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggggaaga 189  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  11785772 ttagggtgtgtttggatggagggtttaggagggtaaga 11785735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 2482019 - 2481983
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  2482019 ttagggtatgtttggatggagggtttaggaggggaag 2481983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 9718489 - 9718521
Alignment:
Q  154 agggtgtgtttggatggagggtttaagagggga 186  Q
    ||||||||||||||||||||||||| |||||||    
T  9718489 agggtgtgtttggatggagggtttaggagggga 9718521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 34196553 - 34196517
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    |||||||| |||||||||||||||||| |||||||||    
T  34196553 ttagggtgcgtttggatggagggtttaggaggggaag 34196517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 154 - 188
Target Start/End: Complemental strand, 47391100 - 47391066
Alignment:
Q  154 agggtgtgtttggatggagggtttaagaggggaag 188  Q
    |||||||||||||||||||||||||||||||||||    
T  47391100 agggtgtgtttggatggagggtttaagaggggaag 47391066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 33519294 - 33519258
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||||||||||||| |||||||||    
T  33519294 ttagggtgtgtttggatggagggtttaggaggggaag 33519258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 36267551 - 36267587
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||||||||||||| |||||||||    
T  36267551 ttagggtgtgtttggatggagggtttaggaggggaag 36267587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 41496955 - 41496991
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||||||||||||| |||||||||    
T  41496955 ttagggtgtgtttggatggagggtttaggaggggaag 41496991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 48881556 - 48881592
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||||||||||||| |||||||||    
T  48881556 ttagggtgtgtttggatggagggtttaggaggggaag 48881592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 16833945 - 16833908
Alignment:
Q  151 tttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  16833945 tttagggtgtgtttggatgcaggatttaagaggggaag 16833908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 41008425 - 41008388
Alignment:
Q  151 tttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  41008425 tttagggtgtgtttggatgcagggtttaggaggggaag 41008388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 17853104 - 17853072
Alignment:
Q  154 agggtgtgtttggatggagggtttaagagggga 186  Q
    ||||||||||||||||||||||||| |||||||    
T  17853104 agggtgtgtttggatggagggtttaggagggga 17853072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 25887190 - 25887226
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  25887190 ttagggtgtgtttggattgagggtttatgaggggaag 25887226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 33655357 - 33655317
Alignment:
Q  149 cttttagggtgtgtttggatggagggtttaagaggggaaga 189  Q
    ||||||| |||||||||||| ||||||||| ||||||||||    
T  33655357 cttttagagtgtgtttggattgagggtttaggaggggaaga 33655317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 40196530 - 40196566
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||||||||||||  |||||||||    
T  40196530 ttagggtgtgtttggatggagggtttgggaggggaag 40196566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 2470727 - 2470765
Alignment:
Q  151 tttagggtgtgtttggatggagggtttaagaggggaaga 189  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  2470727 tttagggtgtgtttggatggagggtttaggaggggaaga 2470765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 35349466 - 35349498
Alignment:
Q  154 agggtgtgtttggatggagggtttaagagggga 186  Q
    |||||||||||||||||||||||||||||||||    
T  35349466 agggtgtgtttggatggagggtttaagagggga 35349498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 40094931 - 40094967
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||||||||||||| |||||||||    
T  40094931 ttagggtgtgtttggatggagggtttaggaggggaag 40094967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 20607466 - 20607427
Alignment:
Q  149 cttttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  20607466 ctttaagggtgtgtttggatggagggtttaggaggggaag 20607427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 1085737 - 1085700
Alignment:
Q  151 tttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  1085737 tttagggtgtgtttggatagagggtttaggaggggaag 1085700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 12234257 - 12234220
Alignment:
Q  151 tttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  12234257 tttatggtgtgtttggatggagggtttaggaggggaag 12234220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 38509891 - 38509928
Alignment:
Q  151 tttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  38509891 tttagggtgtgtttggatagagggtttaggaggggaag 38509928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 26941079 - 26941043
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  26941079 ttagggtgtgtttggattgagggtttaggaggggaag 26941043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 30010330 - 30010366
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  30010330 ttagggtgtgtttggattgagggtttaggaggggaag 30010366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 39182 - 39219
Alignment:
Q  150 ttttagggtgtgtttggatggagggtttaagaggggaa 187  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  39182 ttttagggtgtgtttggatggagggtttaggaggggaa 39219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 14515717 - 14515681
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||||||||||||| |||||||||    
T  14515717 ttagggtgtgtttggatggagggtttaggaggggaag 14515681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 189
Target Start/End: Original strand, 1390319 - 1390354
Alignment:
Q  154 agggtgtgtttggatggagggtttaagaggggaaga 189  Q
    ||||||||||||||||||||||||| ||||||||||    
T  1390319 agggtgtgtttggatggagggtttatgaggggaaga 1390354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 9051781 - 9051742
Alignment:
Q  149 cttttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    |||| ||||||||||||||| |||||||||||||||||||    
T  9051781 ctttaagggtgtgtttggattgagggtttaagaggggaag 9051742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 184
Target Start/End: Complemental strand, 4097534 - 4097504
Alignment:
Q  154 agggtgtgtttggatggagggtttaagaggg 184  Q
    |||||||||||||||||||||||||||||||    
T  4097534 agggtgtgtttggatggagggtttaagaggg 4097504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 15323221 - 15323259
Alignment:
Q  150 ttttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  15323221 ttttagggtgtgtttggattgagggtttaggaggggaag 15323259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 15353360 - 15353398
Alignment:
Q  150 ttttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  15353360 ttttagggtgtgtttggattgagggtttaggaggggaag 15353398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 16737997 - 16738031
Alignment:
Q  155 gggtgtgtttggatggagggtttaagaggggaaga 189  Q
    |||||||||||||||||||||||||||| ||||||    
T  16737997 gggtgtgtttggatggagggtttaagagaggaaga 16738031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 188
Target Start/End: Original strand, 30487306 - 30487340
Alignment:
Q  154 agggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||||||||||| |||||||||    
T  30487306 agggtgtgtttggatggagggtttaggaggggaag 30487340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 4097759 - 4097723
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    |||| |||||||||||| |||||||||||||||||||    
T  4097759 ttagagtgtgtttggattgagggtttaagaggggaag 4097723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 21606854 - 21606886
Alignment:
Q  154 agggtgtgtttggatggagggtttaagagggga 186  Q
    ||||||||||||||||||||||||| |||||||    
T  21606854 agggtgtgtttggatggagggtttaggagggga 21606886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 21607093 - 21607053
Alignment:
Q  149 cttttagggtgtgtttggatggagggtttaagaggggaaga 189  Q
    ||||||| |||||||||||| ||||||||| ||||||||||    
T  21607093 cttttagagtgtgtttggattgagggtttaggaggggaaga 21607053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 187
Target Start/End: Complemental strand, 24560463 - 24560428
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggggaa 187  Q
    ||||||||||||||||||||||||||| ||||||||    
T  24560463 ttagggtgtgtttggatggagggtttaggaggggaa 24560428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 18654597 - 18654635
Alignment:
Q  151 tttagggtgtgtttggatggagggtttaagaggggaaga 189  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  18654597 tttagggtgtgtttggatggagggtttaggagggaaaga 18654635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 24253970 - 24253932
Alignment:
Q  150 ttttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  24253970 ttttagggtgtgtttggatggagggtttagaaggggaag 24253932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 186
Target Start/End: Original strand, 30200096 - 30200130
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagagggga 186  Q
    ||||||||||||||||||||||||||| |||||||    
T  30200096 ttagggtgtgtttggatggagggtttaggagggga 30200130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 188
Target Start/End: Complemental strand, 34641234 - 34641200
Alignment:
Q  154 agggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||||||||||| |||||||||    
T  34641234 agggtgtgtttggatggagggtttaggaggggaag 34641200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 41039947 - 41039985
Alignment:
Q  151 tttagggtgtgtttggatggagggtttaagaggggaaga 189  Q
    ||||||||||||||||||||| |||||| ||||||||||    
T  41039947 tttagggtgtgtttggatggaaggtttaggaggggaaga 41039985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 10943611 - 10943647
Alignment:
Q  151 tttagggtgtgtttggatggagggtttaagaggggaa 187  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  10943611 tttatggtatgtttggatggagggtttaagaggggaa 10943647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 34640998 - 34641034
Alignment:
Q  150 ttttagggtgtgtttggatggagggtttaagagggga 186  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  34640998 ttttagggtgtgtttggattgagggtttaggagggga 34641034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 37102159 - 37102191
Alignment:
Q  154 agggtgtgtttggatggagggtttaagagggga 186  Q
    ||||||||||||||||||||||||| |||||||    
T  37102159 agggtgtgtttggatggagggtttaggagggga 37102191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 37102385 - 37102349
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  37102385 ttagggtgtgtttggattgagggtttaggaggggaag 37102349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 41414317 - 41414281
Alignment:
Q  150 ttttagggtgtgtttggatggagggtttaagagggga 186  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  41414317 ttttagggtgtgtttggatggtgggtttaggagggga 41414281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 42772268 - 42772232
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    |||||||||||||| |||||||||||| |||||||||    
T  42772268 ttagggtgtgtttgaatggagggtttaggaggggaag 42772232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 48683852 - 48683816
Alignment:
Q  150 ttttagggtgtgtttggatggagggtttaagagggga 186  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  48683852 ttttagggtgtgtttggatagagggtttaggagggga 48683816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 188
Target Start/End: Complemental strand, 23748339 - 23748305
Alignment:
Q  154 agggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||||||||||| |||||||||    
T  23748339 agggtgtgtttggatggagggtttaggaggggaag 23748305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 35736172 - 35736209
Alignment:
Q  151 tttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  35736172 tttagggtgtgtttggattgagggtttaggaggggaag 35736209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 17379844 - 17379880
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  17379844 ttagggtgtgtttggattgagggtttaggaggggaag 17379880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 36046205 - 36046237
Alignment:
Q  155 gggtgtgtttggatggagggtttaagaggggaa 187  Q
    |||||||||||||||||||||||| ||||||||    
T  36046205 gggtgtgtttggatggagggtttaggaggggaa 36046237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 36347787 - 36347751
Alignment:
Q  152 ttagggtgtgtttggatggagggtttaagaggggaag 188  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  36347787 ttagggtgtgtttggattgagggtttaggaggggaag 36347751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1942 times since January 2019
Visitors: 1435