View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0134_2D_low_85 (Length: 207)
Name: NF0134_2D_low_85
Description: NF0134_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0134_2D_low_85 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 55077028 - 55077200
Alignment:
| Q |
17 |
tacccaaggcaatggggaaatggaatcagttnnnnnnn-ttgttcagagacatagacaaaaagtgccatacagccatacactaagcaagagcacaattgt |
115 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
55077028 |
tacccaaggcaatggggaaatggaatcagttaaaaaaaattgttcagagacatagacaaaaagtaccatacagccatacactaagcaagagcacaattgt |
55077127 |
T |
|
| Q |
116 |
cagacaatacaatcttcatgcaaaacaaatcatcagatcgataatgcttttgggcttcaaacacacttttatt |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55077128 |
cagacaatacaatcttcatgcaaaacaaatcatcagatcgataatgcttttgggcttcaaacacacttttatt |
55077200 |
T |
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