View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0134_2D_low_89 (Length: 201)
Name: NF0134_2D_low_89
Description: NF0134_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0134_2D_low_89 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 4846318 - 4846495
Alignment:
| Q |
1 |
tcaaaataagtgatgaaaataatctggctggtatgaatcccaacaaacccatgattataccaacatctccaaaacaccgatcaaagtcaaagaagtcaac |
100 |
Q |
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| T |
4846318 |
tcaaagtaagtgataaaaacaatctggctggtatgaatcccaacaaacccatgattataccaacatctccaaaacaccgatcaaagtcaaagaagtcaac |
4846417 |
T |
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| Q |
101 |
cacgctcatggttgctgtggttggagtttcatgtctcttgctggcattcctattggtcgtaagaatcatagcttatgc |
178 |
Q |
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| T |
4846418 |
cacgttcatggttgctgtggttggagtttcatgtctcttgctggcattcctattggtcgtaagaatcatagcttatgc |
4846495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 4712381 - 4712525
Alignment:
| Q |
1 |
tcaaaataagtgatgaaaataatctggctggtatgaatcccaacaaacccatgattataccaacatctccaaaacaccgatcaaagtcaaagaagtcaac |
100 |
Q |
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|||||||||||||| |||||||||| |||||| ||||||||| ||||| | ||||||||| |||||||||| | ||||| ||||| ||||| ||| | |
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| T |
4712381 |
tcaaaataagtgataaaaataatctcgctggtttgaatcccatcaaacac---attataccatcatctccaaatcgacgatcgaagtcgaagaaatcacc |
4712477 |
T |
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| Q |
101 |
cacgctcatggttgctgtggttggagtttcatgtctcttgctggcatt |
148 |
Q |
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| T |
4712478 |
catagtcatgtttgctttggttggattatcatgtctcttgctagcatt |
4712525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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