View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0135-INSERTION-11 (Length: 554)
Name: NF0135-INSERTION-11
Description: NF0135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0135-INSERTION-11 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 8 - 451
Target Start/End: Original strand, 51846085 - 51846533
Alignment:
| Q |
8 |
atttctttatactgaatttgaatccgaagacctgccacatggaaacctcaaatcaagcaatatacttctagccgataattatgagccactcttaagtgac |
107 |
Q |
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| T |
51846085 |
atttctttatactgaatttgaatccgaagacctgccacatggaaacctcaaatcaagcaatatacttctagccgataattatgagccactcttaagtgac |
51846184 |
T |
|
| Q |
108 |
tttgcatttcatccattaatcaactcaagtcatgcaacacaaacaatgtttgcatacaaaactcctgattacgttctttaccagcatgtttcacag-aaa |
206 |
Q |
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| T |
51846185 |
tttgcatttcatccattaatcaactcaagtcatgcaacacaaacaatgtttgcatacaaaactcctgattacgttctttaccaacatgtttcacagaaaa |
51846284 |
T |
|
| Q |
207 |
ccgatgtttattgtctcggaatcatcattcttgaaatcattacagg-aaattcccttctcaatatcacagtaatggtaaaggtggtacagatgttgttca |
305 |
Q |
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| T |
51846285 |
ccgatgtttattgtctcggaatcatcattcttgaaatcattacaggaaaattcccttctcaatatcacagtaatggtaaaggtggtactgatgttgttca |
51846384 |
T |
|
| Q |
306 |
atgggtgttcacagcaatttctgagagaagagaagctgaattgattgatccagagttaacagcaaacaatcaagattcaattaatcatatgttgcaactt |
405 |
Q |
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| T |
51846385 |
atgggtgttcacagcaatttctgagagaagagaagctgaattgattgatccagagttaacagcaaacaatcaagattcaattaatcatatgttgcaactt |
51846484 |
T |
|
| Q |
406 |
cttcaa--ttgggctgcttgcacagaaagtaaccctg-acaacgactta |
451 |
Q |
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| T |
51846485 |
cttcaaattggggctgcttgcacagaaagtaaccctgaacaacgactta |
51846533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 45 - 364
Target Start/End: Complemental strand, 18627563 - 18627242
Alignment:
| Q |
45 |
catggaaacctcaaatcaagcaatatacttctagccgataattatgagccactcttaagtgactttgcatttcatccattaatcaactcaagtcatgcaa |
144 |
Q |
| |
|
|||||||||||||||||||||||| | || ||| | ||| |||||||||| || |||||||||| ||| ||||| ||| |||||||| | || |||| |
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| T |
18627563 |
catggaaacctcaaatcaagcaatgttctactaactgatgattatgagcctcttttaagtgactatgcttttcaaccactaatcaaccctagcattgcag |
18627464 |
T |
|
| Q |
145 |
cacaaacaatgtttgcatacaaaactcctgattacgttctttaccagcatgtttcacagaaa-ccgatgtttattgtctcggaatcatcattcttgaaat |
243 |
Q |
| |
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||| ||||||||||||||||||| || |||||||||| |||| | |||| |||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
18627463 |
tgcaatcaatgtttgcatacaaaacaccggattacgttcaaaaccaaaagctttcgcagaaagccgatgtttattgtctcggaatcatcattcttgaact |
18627364 |
T |
|
| Q |
244 |
cattacaggaaa-ttcccttctcaatatcacagtaatggtaaaggtggtacagatgttgttcaatgggtgttcacagcaatttctgagagaagagaagct |
342 |
Q |
| |
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|||||||||||| ||||||||||| ||||| ||||| ||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
18627363 |
cattacaggaaaattcccttctcagtatcatagtaacggtaaaggtggaaccgatgttgttcaatgggtcctcacagcaatttctgagagaagagaagct |
18627264 |
T |
|
| Q |
343 |
gaattgattgatccagagttaa |
364 |
Q |
| |
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|||||||||||||| ||||||| |
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|
| T |
18627263 |
gaattgattgatcctgagttaa |
18627242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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