View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0135-INSERTION-13 (Length: 602)
Name: NF0135-INSERTION-13
Description: NF0135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0135-INSERTION-13 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
| [»] scaffold0536 (4 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 301 - 602
Target Start/End: Original strand, 12540921 - 12541222
Alignment:
| Q |
301 |
aggaacaacccatatgaatgggtgacccattccttctactgcgcatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12540921 |
aggaacaacccatatgaatgggtgacccattccttctactgcacatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatg |
12541020 |
T |
|
| Q |
401 |
tacaccactgagttaacttgctgtgagttgagccagctaagggactcgtgctcactcgcagcaccctcatttcccctccctgctttctcttgaatgtttt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12541021 |
tacaccactgagttaacttgctgtgagttgagccagctaagggactcgtgctcgctcgcagcaccctcatttcccctccctgctttctcttgaatgtttt |
12541120 |
T |
|
| Q |
501 |
tctgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttcaacaaagttgtt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12541121 |
tctgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttcaacaaagttgtt |
12541220 |
T |
|
| Q |
601 |
ga |
602 |
Q |
| |
|
|| |
|
|
| T |
12541221 |
ga |
12541222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 255
Target Start/End: Original strand, 12540628 - 12540875
Alignment:
| Q |
8 |
gcacctacttctactccaattcctcggacctgtgttattagtttctcgttgaataagtgatctccatgacatggccacgttatcattggaactcccgcac |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12540628 |
gcacctacttctactccaattcctcggacctgtgttattagtttctcgttgaataagtgatctccatgacacggccacgttatcattggaactcccgcac |
12540727 |
T |
|
| Q |
108 |
caacagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12540728 |
caacagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgat |
12540827 |
T |
|
| Q |
208 |
caaacccttttttccaatgtttctctcctcaaatcccttcggcatcca |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12540828 |
caaacccttttttccaatgtttctctcctcaaatcccttcggcatcca |
12540875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 301 - 602
Target Start/End: Original strand, 28385570 - 28385871
Alignment:
| Q |
301 |
aggaacaacccatatgaatgggtgacccattccttctactgcgcatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatg |
400 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||| |
|
|
| T |
28385570 |
aggaacaacccatatgaatgggtgacctgatgcttctactgcgcatgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatatg |
28385669 |
T |
|
| Q |
401 |
tacaccactgagttaacttgctgtgagttgagccagctaagggactcgtgctcactcgcagcaccctcatttcccctccctgctttctcttgaatgtttt |
500 |
Q |
| |
|
||||| |||||||||||| ||||||| ||||||||| | ||| |||||||||| ||| || ||| || |||||| || ||||||||||||||| ||| |
|
|
| T |
28385670 |
tacacaactgagttaactcgctgtgatttgagccagttcaggcactcgtgctcgctcacatcactcttgtttcccttctctgctttctcttgaacagttt |
28385769 |
T |
|
| Q |
501 |
tctgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttcaacaaagttgtt |
600 |
Q |
| |
|
| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28385770 |
tacgaataaaggaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgtttgacacactcttctccatcaagttcaacaaagttgtt |
28385869 |
T |
|
| Q |
601 |
ga |
602 |
Q |
| |
|
|| |
|
|
| T |
28385870 |
ga |
28385871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 28385278 - 28385520
Alignment:
| Q |
9 |
cacctacttctactccaattcctcggacctgtgttattagtttctcgttgaataagtgatctccatgacatggccacgttatcattggaactcccgcacc |
108 |
Q |
| |
|
|||||||||| |||||||||| |||||| |||||| | |||||| ||| ||||||||| ||||||| |||||||||||||||||||||||||| || |
|
|
| T |
28385278 |
cacctacttccactccaattcttcggactgttgttatcaatttctcattgctgaagtgatctgcatgacaaggccacgttatcattggaactcccgcgcc |
28385377 |
T |
|
| Q |
109 |
aacagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatc |
208 |
Q |
| |
|
||||||||||||||||||||| || || |||||||||| |||||||||||||||||||| |||||||||| ||| ||||||||||||||||| || || |
|
|
| T |
28385378 |
aacagcctctacaattgagttccctccgcaatgtgtcagaaatccccccaccgcagggttgctcaatatcagaacttgtggggcccaacccctgattatg |
28385477 |
T |
|
| Q |
209 |
aaacccttttttccaatgtttctctcctcaaatcccttcggca |
251 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
28385478 |
aaacccttctttccaatgtttctctcctcaaatccctttggca |
28385520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 184; Significance: 3e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 3417763 - 3417520
Alignment:
| Q |
8 |
gcacctacttctactccaattcctcggacctgtgttattagtttctcgttgaataagtgatctccatgacatggccacgttatcattggaactcccgcac |
107 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
3417763 |
gcacctacttccactccaattcctcggacttgtgttattagtttctcattgaacaattgatctccatgacccggccacgttatcattggaactcctgcac |
3417664 |
T |
|
| Q |
108 |
caacagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgat |
207 |
Q |
| |
|
|||||||||| |||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
3417663 |
caacagcctcaacaaatgagttccccccacaatgtgtcataaatccccctaccgcagggtggctcaatatctgaacctgtggggcccaacccctaacgat |
3417564 |
T |
|
| Q |
208 |
caaacccttttttccaatgtttctctcctcaaatcccttcggca |
251 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3417563 |
caaacccttctttccaatgtttctctcctcaaatcccttcggca |
3417520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 303 - 602
Target Start/End: Complemental strand, 3417468 - 3417172
Alignment:
| Q |
303 |
gaacaacccatatgaatgggtgacccattccttctactgcgcatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatgta |
402 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||| |||| |||||||||||||||||||||| ||| |||||| |||| |||||||||||||||||| |
|
|
| T |
3417468 |
gaacaacccatatgaatgggtgacccgatgcttctattgcgtatgcaatctcatatagttgtttatcagagaaatagtttaagcttccaaaacatatgta |
3417369 |
T |
|
| Q |
403 |
caccactgagttaacttgctgtgagttgagccagctaagggactcgtgctcactcgcagcaccctcatttcccctccctgctttctcttgaatgtttttc |
502 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||| | ||| |||| ||||||||| |||||||||| ||||||| |||| ||||||| || || || || |
|
|
| T |
3417368 |
caacactgagttaacttgttgtgagttgagccaacgcaggcactcatgctcactctcagcaccctcgtttcccccacctgatttctctagagtggttctc |
3417269 |
T |
|
| Q |
503 |
tgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttcaacaaagttgttga |
602 |
Q |
| |
|
||| ||||| ||||||||||||||||||||||||||| ||||||||| |||||||| | ||||||||||||||||||||||| |||||||||| |
|
|
| T |
3417268 |
caaat---agaagatggaccaagatgccaagccttgtgacctacggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttga |
3417172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 146; Significance: 1e-76; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 13448306 - 13448547
Alignment:
| Q |
8 |
gcacctacttctactccaattcctcggacctgtgttattagtttctcgttgaataagtgatctccatgacatggccacgttatcattggaactcccgcac |
107 |
Q |
| |
|
||||| ||||| |||||||||||||||| |||||||| |||||||| ||| | || |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13448306 |
gcaccgacttcaactccaattcctcggaattgtgttatcagtttctcattgtagaattgatctccatgaaccggccacgttatcattggaactcccgcac |
13448405 |
T |
|
| Q |
108 |
caacagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgat |
207 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13448406 |
taacagcctctacggttgagttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacctgtggggcccaacccctaatgat |
13448505 |
T |
|
| Q |
208 |
caaacccttttttccaatgtttctctcctcaaatcccttcgg |
249 |
Q |
| |
|
||||||||| || || || |||||||| |||||||||||||| |
|
|
| T |
13448506 |
caaacccttcttcccgatatttctctcttcaaatcccttcgg |
13448547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 13454777 - 13455020
Alignment:
| Q |
8 |
gcacctacttctactccaattcctcggacctgtgttattagtttctcgttgaataagtgatctccatgacatggccacgttatcattggaactcccgcac |
107 |
Q |
| |
|
||||| ||||| | |||||||||||| || ||||||||||||||||||||| | || ||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
13454777 |
gcaccgacttcaattccaattcctcgaacttgtgttattagtttctcgttgtagaattgatctccatggactggccacgttatcattggaactcccatgc |
13454876 |
T |
|
| Q |
108 |
caacagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgat |
207 |
Q |
| |
|
|||||||||||| |||||||| ||||| ||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13454877 |
taacagcctctacgattgagttccccccgcaatgcgtcataaatccccccactgcagggtgactcaatatcttaacttgtggggcccaacccctaatgat |
13454976 |
T |
|
| Q |
208 |
caaacccttttttccaatgtttctctcctcaaatcccttcggca |
251 |
Q |
| |
|
|||||||||||| | |||||| |||| |||||||||||||||| |
|
|
| T |
13454977 |
caaaccctttttctcgatgtttttctcttcaaatcccttcggca |
13455020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 13440143 - 13440386
Alignment:
| Q |
8 |
gcacctacttctactccaattcctcggacctgtgttattagtttctcgttgaataagtgatctccatgacatggccacgttatcattggaactcccgcac |
107 |
Q |
| |
|
||||| ||||| |||||||||||||| | ||||||| |||||||||||| | || |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13440143 |
gcaccgacttccactccaattcctcgaaattgtgttaccagtttctcgttgtagaattgatctccatgaaccggccacgttatcattggaactcccgcac |
13440242 |
T |
|
| Q |
108 |
caacagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgat |
207 |
Q |
| |
|
||||| ||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
13440243 |
taacagactctacaattgagttccccccgcaatgcgtcataaatccccccaccgcagggtggctcaatatcttaacttgtggggcccaacccttaatgat |
13440342 |
T |
|
| Q |
208 |
caaacccttttttccaatgtttctctcctcaaatcccttcggca |
251 |
Q |
| |
|
||||||| | | | |||||||||||| || |||||||| |||| |
|
|
| T |
13440343 |
caaacccatcctcctaatgtttctctcttcgaatccctttggca |
13440386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 301 - 602
Target Start/End: Original strand, 13440436 - 13440737
Alignment:
| Q |
301 |
aggaacaacccatatgaatgggtgacccattccttctactgcgcatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatg |
400 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||| |||||| || ||||||||||||||||| ||| |||||| || |||||||||||||||||| |
|
|
| T |
13440436 |
aggaacaacccatatgaatgggtgactagatgcttctattgcgcacgccatctcatatagttgtttatcagagaaatagttgatgcttccaaaacatatg |
13440535 |
T |
|
| Q |
401 |
tacaccactgagttaacttgctgtgagttgagccagctaagggactcgtgctcactcgcagcaccctcatttcccctccctgctttctcttgaatgtttt |
500 |
Q |
| |
|
|||| ||| |||||||||| || ||||| |||||| || | | | |||||| || || ||||||| ||||||||| ||||||||||||||||| ||| |
|
|
| T |
13440536 |
tacaacaccgagttaactttctctgagtcgagccaactcatgcattcgtgcatgttcacatcaccctcctttcccctctctgctttctcttgaatggttt |
13440635 |
T |
|
| Q |
501 |
tctgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttcaacaaagttgtt |
600 |
Q |
| |
|
| |||||| |||||||||||| ||||||||| |||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| |||||||| |
|
|
| T |
13440636 |
tacgaataagagaagttggaccgagatgccaaaccttgtgacccgtggttttctcatagtgttggatgcactcttctccgtcaagttcagtgaagttgtt |
13440735 |
T |
|
| Q |
601 |
ga |
602 |
Q |
| |
|
|| |
|
|
| T |
13440736 |
ga |
13440737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 301 - 602
Target Start/End: Original strand, 13448599 - 13448900
Alignment:
| Q |
301 |
aggaacaacccatatgaatgggtgacccattccttctactgcgcatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatg |
400 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||| || ||||| ||||| ||||||||||| ||| | |||| || |||||||||||||||||| |
|
|
| T |
13448599 |
aggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatg |
13448698 |
T |
|
| Q |
401 |
tacaccactgagttaacttgctgtgagttgagccagctaagggactcgtgctcactcgcagcaccctcatttcccctccctgctttctcttgaatgtttt |
500 |
Q |
| |
|
|||| ||||||||||||| || ||| | |||||| || ||| ||||||| || || |||||||||||||||||||| ||| |||||||||| ||| |
|
|
| T |
13448699 |
tacaacactgagttaactctctctgaatcgagccaactcaggctctcgtgcacattcacagcaccctcatttcccctctctgatttctcttgagcagttt |
13448798 |
T |
|
| Q |
501 |
tctgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttcaacaaagttgtt |
600 |
Q |
| |
|
| |||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||| | ||||||||||||||||||||| |||||||| |
|
|
| T |
13448799 |
tgcgaataagagaagttggaccaagatgccaaaccttgtgacccgtggctttctcgtagtgttgtatgcactcttctccatcaagttcactgaagttgtt |
13448898 |
T |
|
| Q |
601 |
ga |
602 |
Q |
| |
|
|| |
|
|
| T |
13448899 |
ga |
13448900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 302 - 602
Target Start/End: Original strand, 13455071 - 13455371
Alignment:
| Q |
302 |
ggaacaacccatatgaatgggtgacccattccttctactgcgcatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatgt |
401 |
Q |
| |
|
||||||||||||||||| || ||||| | |||||| || |||||| ||||||||||||||||| | | | ||| ||| ||||||||||||||||||| |
|
|
| T |
13455071 |
ggaacaacccatatgaacggttgacctgctgcttctagtgagcatgccatctcatatagttgtttattagatgaataattgatgcttccaaaacatatgt |
13455170 |
T |
|
| Q |
402 |
acaccactgagttaacttgctgtgagttgagccagctaagggactcgtgctcactcgcagcaccctcatttcccctccctgctttctcttgaatgttttt |
501 |
Q |
| |
|
||| |||||||||||| || ||||| |||||||| ||| ||||||| || || || | |||| ||||||||| ||| ||| ||||||| | || | |
|
|
| T |
13455171 |
acaatactgagttaactctctttgagtcaagccagctcaggcactcgtgtacattcacaaaaacctcgtttcccctctctgatttttcttgaacggttct |
13455270 |
T |
|
| Q |
502 |
ctgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttcaacaaagttgttg |
601 |
Q |
| |
|
||||| |||||||||||||| ||||||| |||||||||| || ||||| ||||||||||||| |||||||||||||||| |||| ||||||||| |
|
|
| T |
13455271 |
gcaaataagagaagttggaccaatatgccaaaccttgtgacctgttgttttttcgtagtgttggatgcactcttctccatcaaattcactgaagttgttg |
13455370 |
T |
|
| Q |
602 |
a |
602 |
Q |
| |
|
| |
|
|
| T |
13455371 |
a |
13455371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 3e-37; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 349 - 600
Target Start/End: Complemental strand, 12590061 - 12589810
Alignment:
| Q |
349 |
aatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatgtacaccactgagttaacttgctgtgagttgagccagctaagggactcg |
448 |
Q |
| |
|
||||||||| |||||||| || |||||| |||||| ||||| |||||||||| ||| |||||| || ||| ||||| ||||| || || |||| |
|
|
| T |
12590061 |
aatctcataaagttgtttatctgagaaatagcatatgctcccaaagcatatgtacaacacagagttatctcgcttcgagtttagccaactcagacactct |
12589962 |
T |
|
| Q |
449 |
tgctcactcgcagcaccctcatttcccctccctgctttctcttgaatgtttttctgaataaaagaagttggaccaagatgccaagccttgtgacccgtgg |
548 |
Q |
| |
|
||| | || || ||| |||||||||||| ||||||||||||||| |||| ||||||| ||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
12589961 |
tgcacgttcacaacactctcatttcccctatctgctttctcttgaacagttttgtgaataagagaagctggaccaagatgccaagccttgtgacctgtgg |
12589862 |
T |
|
| Q |
549 |
ttttctcgtagtgttggacacactcttctccatcaagttcaacaaagttgtt |
600 |
Q |
| |
|
||||||| ||||||| ||||||||||| |||||||||||| | |||||||| |
|
|
| T |
12589861 |
ttttctcatagtgtttgacacactcttggccatcaagttcagcgaagttgtt |
12589810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 134 - 216
Target Start/End: Complemental strand, 12590282 - 12590200
Alignment:
| Q |
134 |
ccacaatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaaccctt |
216 |
Q |
| |
|
||||||||||||||||| | ||||| ||| |||||||| ||| | || |||||||||||||||||||||||||||||||| |
|
|
| T |
12590282 |
ccacaatgtgtcataaacgcgcccactgcattgtggctcataatcattacttgtggggcccaacccctaatgatcaaaccctt |
12590200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 251
Target Start/End: Complemental strand, 12483577 - 12483454
Alignment:
| Q |
134 |
ccacaatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttttt------tccaatgt |
227 |
Q |
| |
|
||||| || ||||||||| | ||||| |||||||||||||| ||| |||||||| ||||| ||||| ||||| |||||| | || || ||||| |
|
|
| T |
12483577 |
ccacagtgagtcataaatgcacccactgcagggtggctcaaaatcagtacctgtggtgcccaccccctgatgattaaacccatcttattccttctaatgt |
12483478 |
T |
|
| Q |
228 |
ttctctcctcaaatcccttcggca |
251 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
12483477 |
ttctctcctcaaatcccttcggca |
12483454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 517 - 589
Target Start/End: Complemental strand, 12483188 - 12483116
Alignment:
| Q |
517 |
tggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttca |
589 |
Q |
| |
|
|||||| | ||||||||||||||||||| || |||| |||||||||| ||| || |||| ||||| |||||| |
|
|
| T |
12483188 |
tggacctaaatgccaagccttgtgacccatgattttttcgtagtgttcgacgcattctttgccatccagttca |
12483116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 7e-32; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 8 - 246
Target Start/End: Original strand, 48965272 - 48965510
Alignment:
| Q |
8 |
gcacctacttctactccaattcctcggacctgtgttattagtttctcgttgaataagtgatctccatgacatggccacgttatcattggaactcccgcac |
107 |
Q |
| |
|
||||| ||||| |||||||| ||||| || | |||||| ||||| |||||| | || || |||||||| | ||||| || ||||| ||||| ||||||| |
|
|
| T |
48965272 |
gcaccaacttccactccaatccctcgcacttctgttatcagtttttcgttgtagaattgttctccatgtgaaggccatgtaatcatcggaacccccgcac |
48965371 |
T |
|
| Q |
108 |
caacagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgat |
207 |
Q |
| |
|
|||||||||| || | ||||| | |||||||| |||||||| | ||||| || |||||||||| ||| |||||| || |||||||||||||| || |
|
|
| T |
48965372 |
caacagcctccactgtggagttccaaccacaatgagtcataaaggcacccacagcggggtggctcagaatcagaacctgcggagcccaacccctaataat |
48965471 |
T |
|
| Q |
208 |
caaacccttttttccaatgtttctctcctcaaatccctt |
246 |
Q |
| |
|
||||||||| ||||||||||||||||| || |||||||| |
|
|
| T |
48965472 |
caaacccttctttccaatgtttctctcttcgaatccctt |
48965510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 347 - 602
Target Start/End: Original strand, 48958429 - 48958684
Alignment:
| Q |
347 |
gcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatgtacaccactgagttaacttgctgtgagttgagccagctaagggact |
446 |
Q |
| |
|
||||||||||| |||||||| ||| | |||| | |||||||||||| |||||||||| |||||||||| | || |||||||||| || || | |
|
|
| T |
48958429 |
gcaatctcataaagttgtttatcagataaataacatatgcttccaaagcatatgtacaacactgagttatgtctcttcaagttgagccaactcagacaac |
48958528 |
T |
|
| Q |
447 |
cgtgctcactcgcagcaccctcatttcccctccctgctttctcttgaatgtttttctgaataaaagaagttggaccaagatgccaagccttgtgacccgt |
546 |
Q |
| |
|
| ||| |||| || || ||||||||||||| ||| ||||||||||||| ||| |||||| ||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
48958529 |
catgcacactaacaacattctcatttcccctctctgatttctcttgaatggtttggcgaataagagaagcaggaccaagatgccaaaccttgtgacccgt |
48958628 |
T |
|
| Q |
547 |
ggttttctcgtagtgttggacacactcttctccatcaagttcaacaaagttgttga |
602 |
Q |
| |
|
| |||||| |||||||| || |||||||| ||||||||||||| |||||||||| |
|
|
| T |
48958629 |
gattttcttgtagtgttcgatgcactcttcaccatcaagttcaatgaagttgttga |
48958684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 301 - 602
Target Start/End: Complemental strand, 48912285 - 48911984
Alignment:
| Q |
301 |
aggaacaacccatatgaatgggtgacccattccttctactgcgcatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatg |
400 |
Q |
| |
|
||||||||||||||||||| ||||| | | |||| | |||| ||||||||||| |||||||| || | |||||| | ||||||||| |||||| |
|
|
| T |
48912285 |
aggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacattggcttccaaagcatatg |
48912186 |
T |
|
| Q |
401 |
tacaccactgagttaacttgctgtgagttgagccagctaagggactcgtgctcactcgcagcaccctcatttcccctccctgctttctcttgaatgtttt |
500 |
Q |
| |
|
|||||||| |||||| |||| | ||||| ||||| || | |||||||| ||||| || ||| ||| | ||| ||| | || ||||||||||| || |
|
|
| T |
48912185 |
tacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctctcagccttctcttgaatagttc |
48912086 |
T |
|
| Q |
501 |
tctgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttcaacaaagttgtt |
600 |
Q |
| |
|
| |||||| ||||| |||||||||||||||||| ||||||| || |||||||||||||||| || | ||||||| || ||||||||| |||| ||||| |
|
|
| T |
48912085 |
tgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttcagcaaaattgtt |
48911986 |
T |
|
| Q |
601 |
ga |
602 |
Q |
| |
|
|| |
|
|
| T |
48911985 |
ga |
48911984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 80 - 251
Target Start/End: Original strand, 48958159 - 48958333
Alignment:
| Q |
80 |
ggccacgttatcattggaactcccgcaccaacagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatct |
179 |
Q |
| |
|
|||||||| ||||||||||| ||||| | ||||||||| ||| | ||||| | ||| ||||||||||||||| | ||||| ||| |||||||| ||| |
|
|
| T |
48958159 |
ggccacgtgatcattggaacccccgcgctaacagcctccacagtggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatca |
48958258 |
T |
|
| Q |
180 |
taacctgtggggcccaacccctaatgatcaaacc---cttttttccaatgtttctctcctcaaatcccttcggca |
251 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||||| || ||||| ||||||| |
|
|
| T |
48958259 |
aaacttgtggggcccaccccctaatgatcaaacctttcttctttccaatgtttctctcttcgaatcctttcggca |
48958333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 466 - 602
Target Start/End: Original strand, 48962695 - 48962831
Alignment:
| Q |
466 |
ctcatttcccctccctgctttctcttgaatgtttttctgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttgg |
565 |
Q |
| |
|
||||| |||||| ||||||||||||||| | ||| |||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
48962695 |
ctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtgacccgtggttttctcgtagtgttcg |
48962794 |
T |
|
| Q |
566 |
acacactcttctccatcaagttcaacaaagttgttga |
602 |
Q |
| |
|
| |||||||| || ||||||||| | |||||||||| |
|
|
| T |
48962795 |
atgcactcttcaccgtcaagttcagcgaagttgttga |
48962831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 209
Target Start/End: Complemental strand, 48912509 - 48912380
Alignment:
| Q |
80 |
ggccacgttatcattggaactcccgcaccaacagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatct |
179 |
Q |
| |
|
|||||||| ||||||||||| || |||| ||| ||||| ||| | || || | ||||||||||||||||||| | ||||| || | |||||||| ||| |
|
|
| T |
48912509 |
ggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatca |
48912410 |
T |
|
| Q |
180 |
taacctgtggggcccaacccctaatgatca |
209 |
Q |
| |
|
|||||||||| ||||||||| |||| |||| |
|
|
| T |
48912409 |
taacctgtggagcccaacccttaataatca |
48912380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 472 - 547
Target Start/End: Original strand, 48965736 - 48965811
Alignment:
| Q |
472 |
tcccctccctgctttctcttgaatgtttttctgaataaaagaagttggaccaagatgccaagccttgtgacccgtg |
547 |
Q |
| |
|
||||||| ||||||||||||||| |||| |||||| ||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
48965736 |
tcccctctctgctttctcttgaacagttttacgaataagagaagctggaccaagatgccaagccttatgacccgtg |
48965811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 137 - 251
Target Start/End: Original strand, 48961365 - 48961482
Alignment:
| Q |
137 |
caatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacc---cttttttccaatgtttctct |
233 |
Q |
| |
|
||||| |||||||| | |||||||| | ||||| || ||| |||| ||||||||||| ||| ||||||||||||| ||| ||| |||||||||||| |
|
|
| T |
48961365 |
caatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctct |
48961464 |
T |
|
| Q |
234 |
cctcaaatcccttcggca |
251 |
Q |
| |
|
| |||||||| ||||||| |
|
|
| T |
48961465 |
cttcaaatcctttcggca |
48961482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 518 - 558
Target Start/End: Original strand, 48951687 - 48951727
Alignment:
| Q |
518 |
ggaccaagatgccaagccttgtgacccgtggttttctcgta |
558 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48951687 |
ggaccaagatgccaagccttgtgaccgatggttttctcgta |
48951727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 48974349 - 48974401
Alignment:
| Q |
305 |
acaacccatatgaatgggtgacccattccttctactgcgcatgcaatctcata |
357 |
Q |
| |
|
||||||||||||||| |||||||| | |||||| ||||| |||||||||||| |
|
|
| T |
48974349 |
acaacccatatgaattggtgacccgatgcttctattgcgcttgcaatctcata |
48974401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 504 - 600
Target Start/End: Complemental strand, 12641218 - 12641122
Alignment:
| Q |
504 |
gaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttcaacaaagttgtt |
600 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||| |||| |||||||||| ||||||| || || ||||| ||||||||||||||||||||||| |
|
|
| T |
12641218 |
gaataagacaagttggaccaagatgccaagccttgtaacccatggttttctcatagtgtttgatgcaatcttcaccatcaagttcaacaaagttgtt |
12641122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 213
Target Start/End: Complemental strand, 12641646 - 12641512
Alignment:
| Q |
79 |
tggccacgttatcattggaactcccgcaccaacagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatc |
178 |
Q |
| |
|
||||||||| |||||||||| || |||| |||||||||||| | ||||| ||| ||||| ||||| ||| | ||||| |||| |||||| || ||| |
|
|
| T |
12641646 |
tggccacgtgatcattggaatccctgcactaacagcctctaccaaggagttcgacccgcaatgcgtcatgaatgcacccacagcagcgtggcttaaaatc |
12641547 |
T |
|
| Q |
179 |
ttaacctgtggggcccaacccctaatgatcaaacc |
213 |
Q |
| |
|
| || ||||||||||| |||||||||| ||||| |
|
|
| T |
12641546 |
attacttgtggggcccactccctaatgataaaacc |
12641512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 435
Target Start/End: Complemental strand, 12641375 - 12641287
Alignment:
| Q |
347 |
gcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatgtacaccactgagttaacttgctgtgagttgagcca |
435 |
Q |
| |
|
|||||||| || |||||||| ||| |||||| | ||||| |||||||||||||| | |||||| ||| |||||| ||| |||||||| |
|
|
| T |
12641375 |
gcaatctcgtaaagttgtttatcagagaaataagagatgctcccaaaacatatgtataacactgaattatcttgctttgaattgagcca |
12641287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 301 - 589
Target Start/End: Complemental strand, 6451 - 6163
Alignment:
| Q |
301 |
aggaacaacccatatgaatgggtgacccattccttctactgcgcatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatg |
400 |
Q |
| |
|
||||||||||||||||||| ||||||| | |||||| | ||||||||||| || |||||||| || |||| | || ||||||||| |||||| |
|
|
| T |
6451 |
aggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatg |
6352 |
T |
|
| Q |
401 |
tacaccactgagttaacttgctgtgagttgagccagctaagggactcgtgctcactcgcagcaccctcatttcccctccctgctttctcttgaatgtttt |
500 |
Q |
| |
|
|||| |||||||||| || ||| |||| ||||| || || |||| ||| ||||| || ||| | | ||||||| |||||| ||||||| || |
|
|
| T |
6351 |
tacaacactgagttatctggcttcgagtctagccaactcagacactcatgcacactcacaacactttgttgtcccctctgtgctttttcttgaacagttc |
6252 |
T |
|
| Q |
501 |
tctgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttca |
589 |
Q |
| |
|
| |||||| ||||| ||||||||||||||||| |||||||| || |||||||||||||||| || ||||||| || ||||||||| |
|
|
| T |
6251 |
tacgaataagagaagccggaccaagatgccaagctttgtgacctgtagttttctcgtagtgttcgatgtactcttcaccgtcaagttca |
6163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 79 - 216
Target Start/End: Complemental strand, 10658 - 10521
Alignment:
| Q |
79 |
tggccacgttatcattggaactcccgcaccaacagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatc |
178 |
Q |
| |
|
||||||||| ||||||||||| || |||| ||| ||||| || | || || | |||||||||||||||||| | ||||| ||| |||||| | ||| |
|
|
| T |
10658 |
tggccacgtgatcattggaacccctgcactaaccgcctccacggtggaattccacccacaatgtgtcataaacgcacccacaacagtgtggcttagaatc |
10559 |
T |
|
| Q |
179 |
ttaacctgtggggcccaacccctaatgatcaaaccctt |
216 |
Q |
| |
|
||||||| |||||||||||| |||| ||||||||||| |
|
|
| T |
10558 |
ataacctgaggggcccaacccttaataatcaaaccctt |
10521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 216
Target Start/End: Complemental strand, 6675 - 6539
Alignment:
| Q |
80 |
ggccacgttatcattggaactcccgcaccaacagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatct |
179 |
Q |
| |
|
|||||||| ||||| ||||| || |||| ||||||||| ||| | || || | ||||||||| |||||||| | |||| || ||||||||| ||| |
|
|
| T |
6675 |
ggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacgcacccagagctttgtggctcaaaatca |
6576 |
T |
|
| Q |
180 |
taacctgtggggcccaacccctaatgatcaaaccctt |
216 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||||||||| |
|
|
| T |
6575 |
taacttgtggagcccaacccctaataatcaaaccctt |
6539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 602
Target Start/End: Complemental strand, 1225 - 1104
Alignment:
| Q |
481 |
tgctttctcttgaatgtttttctgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctcca |
580 |
Q |
| |
|
||||||||||||| || |||| ||| || ||| | ||| |||||| |||||||||||||||| ||||| |||| || | | ||||||||||||||| |
|
|
| T |
1225 |
tgctttctcttgagtggttttgcgaacaagagatgctgggccaagaagccaagccttgtgaccgatggttctctcataatactcaacacactcttctcca |
1126 |
T |
|
| Q |
581 |
tcaagttcaacaaagttgttga |
602 |
Q |
| |
|
|| || || |||||| |||||| |
|
|
| T |
1125 |
tcgagctctacaaagctgttga |
1104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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