View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0135-INSERTION-14 (Length: 600)
Name: NF0135-INSERTION-14
Description: NF0135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0135-INSERTION-14 |
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Alignment Details
Target: chr7 (Bit Score: 564; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 8 - 597
Target Start/End: Complemental strand, 38813860 - 38813269
Alignment:
| Q |
8 |
gaaaataccgaaaaagttttggatttgatgaactttcgagttgttgagttgtctgaagtatatactcgaagtcatcatgaagataaaattggttttaagt |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38813860 |
gaaaataccgaaaaagttttggatttgatgaactttcgagttgttgagttgtctgaagtatatactcgaagtcatcatgaagataaaattggttttaagt |
38813761 |
T |
|
| Q |
108 |
gtgcatcccgtaataatgtttgcaatgtttgcaatatttgcaaagtaatcttgttttctattgagggtcgttgcatggtctttgcactgcataatgataa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38813760 |
gtgcatcccgtaataatgtttgcaatgtttgcaatatttgcaaagtaatcttgttttctattgagggtcgttgcatggtctttgcactgcataatgataa |
38813661 |
T |
|
| Q |
208 |
agagttgactgtttccaatattggagaaaaagaaaatatcatgttaaaggatgattgtagagaaaacaaatattttgatgatataatacattacaaggga |
307 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38813660 |
agagttgactgtttccaatattggagaaaaggaaaatatcatgttaaatgatgattgtagagaaaacaaatattttgatgatataatacattacaaggga |
38813561 |
T |
|
| Q |
308 |
caactttatgttgtggataaaatgggaacaattttctggatcaatgctctttccttgaagttggttcaattttcaccaaaaaacatgtaccattgtgctg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38813560 |
caactttatgttgtggataaaatgggaacaattttctggatcaatgctctttccttgaagttggttcaattttcaccaaaaaacatgtaccattgtgctg |
38813461 |
T |
|
| Q |
408 |
aaaataggcatataagggtgaattctaacataaacaagaagcaattagtagagtatgatggaggtctatatgtggttgatttatatatcaatgatgaaag |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38813460 |
aaaataggcatataagggtgaattctaacataaacaagaagcaattagtagagtatgatggaggtctatatgtggttgatttatatatcaatgatgaaag |
38813361 |
T |
|
| Q |
508 |
gtattacaaagggggttacttcttgaaggccg-ttttgtggaagtttataagcttgatcaagaat-gggtaaatggttaaaagtaaaagatt |
597 |
Q |
| |
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|
| T |
38813360 |
gtattacaaaaggggttacttcttgaaggccgtttttgtggaagtttataagcttgatcaagaatggggtaaatggttaaaagtaaaagatt |
38813269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 140 - 597
Target Start/End: Complemental strand, 38825619 - 38825170
Alignment:
| Q |
140 |
aatatttgcaaagtaatcttgttttctattgagggtcgttgcatggtctttgcactgcataatgataaagagttgactgtttccaatattggagaaaaag |
239 |
Q |
| |
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|||||| |||||||||||||||||||| ||||||||||| |||||||||||||||| ||| ||||||| |||||| || || ||||||||| || | |
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| T |
38825619 |
aatattcgcaaagtaatcttgttttctgttgagggtcgtcgcatggtctttgcactatatattgataaa-agttgaaagtgtctaatattggaaaacaga |
38825521 |
T |
|
| Q |
240 |
aaaatatcatgttaaaggatgattgtagagaaaacaaatattttgatgatataatacattacaagggacaactttatgttgtggataaaatgggaacaat |
339 |
Q |
| |
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|||||| | | ||||| |||||| || |||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
38825520 |
aaaataccttattaaa-gatgatggtggagaaaacaagtattttgatgatataatactttacaaggg--------atgttgtggataaaatgggaacaat |
38825430 |
T |
|
| Q |
340 |
tttctggat---caatgctctttccttgaagttggttcaattttcaccaaaaaacatgtaccattgtgctgaaaataggcatataagggtgaattctaac |
436 |
Q |
| |
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||||||||| |||||| | ||||| ||||||||||| ||||||||||||||| | | ||||| |||||| || ||||| || |||| | |
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| T |
38825429 |
tttctggataaataatgctttatccttaaagttggttcagttttcaccaaaaaac---ttcttttgtggtgaaaagagtaatatatggaagaatcatgtt |
38825333 |
T |
|
| Q |
437 |
ataaacaagaagcaattagtagagtatgatggaggtctatatgtggttgatttatatatcaatgatgaaaggtattacaaagggggttacttcttgaagg |
536 |
Q |
| |
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| |||| || ||||||||||||| ||||||| ||| | |||||||||| | ||||| | |||||||||| ||||||| |||| |||||||||||| |
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| T |
38825332 |
gcatacaataaacaattagtagagtttgatggaaatctctgtgtggttgatatgtatattgacgatgaaaggttttacaaattgggtcacttcttgaagg |
38825233 |
T |
|
| Q |
537 |
ccgtt-ttgtggaagtttataagcttgatcaagaat-gggtaaatggttaaaagtaaaagatt |
597 |
Q |
| |
|
| || |||| |||| ||||||||||||||||||| ||||||||||||| | |||||||||| |
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|
| T |
38825232 |
ctattcgtgtgaaagtatataagcttgatcaagaatggggtaaatggttatatgtaaaagatt |
38825170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 218 - 513
Target Start/End: Complemental strand, 38810969 - 38810670
Alignment:
| Q |
218 |
gtttccaatattggagaaaaagaaaatatc----atgttaaaggatgattgtagagaaaacaaatattttgatgatataatacattacaagggacaactt |
313 |
Q |
| |
|
|||||||||||| ||||||||||||||| | || |||||||||||| || ||| ||||| | |||| |||||||||||| ||| || ||||||||| |
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| T |
38810969 |
gtttccaatatttgagaaaaagaaaataccatatatattaaaggatgatggtggagtaaacatttttttttatgatataatactttataatggacaactt |
38810870 |
T |
|
| Q |
314 |
tatgttgtggataaaatgggaacaattttctggatcaatgctctttccttgaagttggttcaattttcaccaaaaaacatgtaccattgtgctgaaaata |
413 |
Q |
| |
|
|||||| ||||| | | |||||||||||| ||| |||||| | ||||||||||||||||||||||||||||||||| ||| | ||||| |||| | |
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|
| T |
38810869 |
tatgttatggatgataaatgaacaattttctagataaatgctttgtccttgaagttggttcaattttcaccaaaaaacttgtcctgttgtgacaaaaaga |
38810770 |
T |
|
| Q |
414 |
ggcatataagggtgaattctaacataaacaagaagcaattagtagagtatgatggaggtctatatgtggttgatttatatatcaatgatgaaaggtatta |
513 |
Q |
| |
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|||||||||||||||| | | | | ||| || ||| ||||||||||||| ||| | |||| |||||||||||||| ||||| ||||||||||||||||| |
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|
| T |
38810769 |
ggcatataagggtgaactgtgatacaaaaaacaagaaattagtagagtacaatgaaagtctttatgtggttgatttgtatattaatgatgaaaggtatta |
38810670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 177; Significance: 4e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 147 - 597
Target Start/End: Original strand, 35520644 - 35521096
Alignment:
| Q |
147 |
gcaaagtaatcttgttttctattgagggtcgttgcatggtctttgcactgcataatgataaagagttgactgtttccaatattggagaaaaagaaaatat |
246 |
Q |
| |
|
||||||||||||| | ||| |||||||||| ||| ||||||||||||||| || | ||||| | ||| |||||||| |||| |||||| | ||| |
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|
| T |
35520644 |
gcaaagtaatcttttcttccattgagggtcattgtatggtctttgcactgtattcaggtaaagcggtgatagtttccaacattgaagaaaatacatatac |
35520743 |
T |
|
| Q |
247 |
catgttaaaggatgattgtagagaaaacaaatattttgatgatataatacattacaagggacaactttatgttgtggataaaatgggaacaattttctgg |
346 |
Q |
| |
|
||||||| |||| ||| || |||||| | | | |||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||| |||||| |
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|
| T |
35520744 |
catgttagaggacgatggtggagaaacccattgttttgatgatatgatactttacaagggccaactttatgttgtggataaaatgggaacaatattctgg |
35520843 |
T |
|
| Q |
347 |
atcaatgctctttccttgaagttggttcaattttcaccaaaaaacatgtaccattgtgctgaaaataggcatataagggtgaattctaacataaacaaga |
446 |
Q |
| |
|
|| ||||| | || || ||||||||||| |||||||| |||||| ||||| ||||| |||||| ||||||||||||||||| || | |||||||| |
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|
| T |
35520844 |
ttccatgctttgtctttcaagttggttcagttttcacctaaaaacttgtactgttgtgaagaaaatgggcatataagggtgaatgcttgcgaaaacaaga |
35520943 |
T |
|
| Q |
447 |
agcaattagtagagtatgatggaggtctatatgtggttgatttatatatcaatgatgaaaggtattacaaagggggttacttcttgaaggccg-ttttgt |
545 |
Q |
| |
|
|| |||||||||||||||||||| |||| ||||||||||| | ||||| ||||||||||| ||||||||| ||||||||| ||||||| | |||||| |
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|
| T |
35520944 |
agaaattagtagagtatgatggaagtctctatgtggttgacctgtatattaatgatgaaagatattacaaatggggttactatttgaaggatgtttttgt |
35521043 |
T |
|
| Q |
546 |
ggaagtttataagcttgatcaagaat-gggtaaatggttaaaagtaaaagatt |
597 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35521044 |
ggaagtttataagcttgatcaagaatggggtaaatggttaaaagtaaaagatt |
35521096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 35520541 - 35520595
Alignment:
| Q |
20 |
aaagttttggatttgatgaactttcgagttgttgagttgtctgaagtatatactc |
74 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||| |||| ||||||||| |
|
|
| T |
35520541 |
aaagttttgaatttgatgaactttcgagttgtggagttgtttgaactatatactc |
35520595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 283 - 507
Target Start/End: Complemental strand, 35548873 - 35548649
Alignment:
| Q |
283 |
tgatgatataatacattacaagggacaactttatgttgtggataaaatgggaacaattttctggatcaatgctctttccttgaagttggttcaattttca |
382 |
Q |
| |
|
|||||||||||| | | ||| || ||||||||||||||||||| ||| || |||||||||||||||||| || | | |||||||||||||| |||||| |
|
|
| T |
35548873 |
tgatgatataattcttcacagggaacaactttatgttgtggatgaaaacgggacaattttctggatcaatcctttgactttgaagttggttcagttttca |
35548774 |
T |
|
| Q |
383 |
ccaaaaaacatgtaccattgtgct--gaa-aataggcatataagggtgaattctaacataaacaagaagcaattagtagagtatgatggaggtctatatg |
479 |
Q |
| |
|
|| ||| ||||| ||||| | ||| || | ||| ||| ||||||| ||| | | ||| |||||||| |||||||| ||||||||| ||| |||| |
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|
| T |
35548773 |
cc---aaagttgtactgttgtgataggaataagaagcacatatgggtgaaatctgataaaaagaagaagcagttagtagaatatgatggaaatctctatg |
35548677 |
T |
|
| Q |
480 |
tggttgatttatatatcaatgatgaaag |
507 |
Q |
| |
|
|||||||||| ||||| |||||| |||| |
|
|
| T |
35548676 |
tggttgatttgtatattaatgataaaag |
35548649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 35549122 - 35549061
Alignment:
| Q |
13 |
taccgaaaaagttttggatttgatgaactttcgagttgttgagttgtctgaagtatatactc |
74 |
Q |
| |
|
|||| ||||||| ||| |||||||||||| |||| |||| ||||||| ||||| |||||||| |
|
|
| T |
35549122 |
tacccaaaaagtattgaatttgatgaactatcgatttgtggagttgtttgaaggatatactc |
35549061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 384
Target Start/End: Complemental strand, 34864928 - 34864856
Alignment:
| Q |
312 |
tttatgttgtggataaaatgggaacaattttctggatcaatgctctttccttgaagttggttcaattttcacc |
384 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||| | ||||| ||||||||||||| |||||| |
|
|
| T |
34864928 |
tttatgttgtggataaaagtggaattattttctggatcaattgttcatcctttaagttggttcaatgttcacc |
34864856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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