View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0135-INSERTION-15 (Length: 499)
Name: NF0135-INSERTION-15
Description: NF0135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0135-INSERTION-15 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 7 - 499
Target Start/End: Complemental strand, 43015505 - 43015013
Alignment:
| Q |
7 |
aaaatatcagcagtctgttctccatttaaacaagcagtacatgtaagccaataactaatcatgaattaaaatcaattcttttgttacagatacatcgaat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43015505 |
aaaatatcagcagtctgttctccatttaaacaagcagtacatgtaagccaataactaatcatgaattaaaatcaattcttttgttacagatacatcgaat |
43015406 |
T |
|
| Q |
107 |
catgaattagaatgaaaacccctcgcacgacgagttataagaacttctgtacaaatggttatattagccacaggtacatctagaaaaattaagggcacag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43015405 |
catgaattagaatgaaaacccctcgcacgacgagttataagaacttctgtacaaatggttatattagccacaggtacatctagaaaaattaagggcacag |
43015306 |
T |
|
| Q |
207 |
tgcagcaaatgtatcagagaaatgtgtgtttgaactatagtttcactcatggcgtaaagaaaggaatagtttctaagagcagtaccacgaatgctaatgt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43015305 |
tgcagcaaatgtatcagagaaatgtgtgtttgaactatagtttcactcatggcgtaaagaaaggaatagtttctaagagcagtaacacgaatgctaatgt |
43015206 |
T |
|
| Q |
307 |
agcatcagaataataattaagaaacaattacgcatagttgtatttgtataagatattgcaagtagaaaataaagaaattcnnnnnnnttgacggattttt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43015205 |
agcatcagaataataattaagaaacaattacgcatagttgtatttgtataagatattgcaagtagaaaataaagaaattcaaaaaaattgacggattttt |
43015106 |
T |
|
| Q |
407 |
tggtccacagcatataactacgtggcatacaattagattaagtctcagcgaactgtcgtgcgaatctgttttaaattttaatgaattattata |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43015105 |
tggtccacagcatataactacgtggcatacaattagattaagtctcagcgaactgtcgtgcgaatctgttttaaattttaatgaattattata |
43015013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1414 times since January 2019
Visitors: 1420