View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0135-INSERTION-3 (Length: 480)
Name: NF0135-INSERTION-3
Description: NF0135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0135-INSERTION-3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 7 - 476
Target Start/End: Complemental strand, 8549107 - 8548630
Alignment:
| Q |
7 |
acacagagcctaaagagcatcgaacaaaatatcaaccatatccatatgcattgccaatacacagttgaaaaaccaatgaagtcctcctcaaaccctctta |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8549107 |
acacagagcctaaagagcatcgaacaaaatatcaaccatatccatatgcattgccaatgcacagttgaaaaaccaatgaagtcctcctcaaaccctctta |
8549008 |
T |
|
| Q |
107 |
tcactcaaaagtagcttaatgcatggaccaaaattagtgttgtagaagacaaaattcagaggcagaccaaacatacacaagcccttactctaagtccacc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
8549007 |
tcactcaaaagtagcttaatgcatggaccaaaattagtgttgtagaagacaaaattcagaggcagaccaaacatacacaagcccttactctaagtccaac |
8548908 |
T |
|
| Q |
207 |
-------tttcnnnnnnnngaaagaactc-taagtccacctnnnnnnngtaatttacactctccactctannnnnnnnctaaatacctaacggttagact |
298 |
Q |
| |
|
||| |||||||||| ||||||||||| ||||| ||||||||||| |||| ||||||||||| ||||||||| |
|
|
| T |
8548907 |
tttttttttttttttttttgaaagaactcttaagtccacctaaaaaaagtaatatacactctccattctatttttttcttaaatacctaatggttagact |
8548808 |
T |
|
| Q |
299 |
cacacactataaatactgaaaagaggagaacttgaaattcgaactccgacctcctctatggcaatgttcatagagctgccattttagcacgcacttataa |
398 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8548807 |
cacacactataaatactgagaagaggagaacttgaaattcgaactccgacctcctctacggcaatgttcatagagctgccattttagcacgcacttataa |
8548708 |
T |
|
| Q |
399 |
aacattctcgattctatattacataagtcattttagcacaaaaaattgctcaatttataagttattttataatatcat |
476 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8548707 |
aacactctcgattctatattacataagtcattttagcactaaaaattgctcaatttataagttattttataatatcat |
8548630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1277 times since January 2019
Visitors: 1417