View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0135-INSERTION-5 (Length: 422)
Name: NF0135-INSERTION-5
Description: NF0135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0135-INSERTION-5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 7 - 422
Target Start/End: Complemental strand, 3711041 - 3710625
Alignment:
| Q |
7 |
atgtcattgttccattattgctctagaatgaatcagacgatacatgttccatcaatggtcctgaccactccatcttcctatgtgtctcttgctagggatt |
106 |
Q |
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| T |
3711041 |
atgtcattgttccattattgctctagaatgaatcagacgatacctgttccatcaatggtcctgaccactccatcttctaatgtgactcttgctagggatt |
3710942 |
T |
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| Q |
107 |
gtctatatgatggttcttttataagctaatgacttagggtcacccgacccgtttatcgattgggccttgacttagtatggaacaatttcctatgaagccg |
206 |
Q |
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| T |
3710941 |
gtctatatgttgattcttttataagctaatgacttagggtgacccgacccgtttatcgattgggccttgatttagtatggaacaatttcctatgaagccg |
3710842 |
T |
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| Q |
207 |
ttggttgacaatgtaaggtgatggcttgtttttccgttaaacgttggaccgaaagtgtgttgtatctctacgacctttggggtcccccttcaatgtatta |
306 |
Q |
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| T |
3710841 |
ttggttgacaatgtaaggtgatggcttgttttttcgtcaaacgttggaccgaaagtgtgttgtatctctacgacctttggggtccctcttcaatgtatta |
3710742 |
T |
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| Q |
307 |
gtgtaattgagggagtcaaatgatggctcatagcaggaccaagtctttgaaatanaagcatggtgtatatgtgccctttgggtccagtatccttgataat |
406 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3710741 |
gtgtagttgagggagtcaaatgatggctcatagcaggaccaagtctttgaaataaaagcatgttgtatatgtgccctttgggtccagtatccttgataat |
3710642 |
T |
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| Q |
407 |
g-aaagattcgttcttg |
422 |
Q |
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| T |
3710641 |
gaaaaaattcgttcttg |
3710625 |
T |
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