View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0135-INSERTION-7 (Length: 612)
Name: NF0135-INSERTION-7
Description: NF0135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0135-INSERTION-7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 8 - 612
Target Start/End: Original strand, 42084354 - 42084959
Alignment:
| Q |
8 |
cctttgttatagaaatagcttatgcatagacacttatgttttaagtgcttaattgagctatacatcgccttcatttcctttccttttcaatccataatcc |
107 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42084354 |
cctttgttatagaaatagcttatacatagacacttatgttttaagtgcttaattgagctatacatcgccttcatttcctttccttttcaatccataatcc |
42084453 |
T |
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| Q |
108 |
atatcatcatctcttccccttccatcacactcatatttacattgatataaaggcacatgcatctagcatagttcagttaaattataccaaattaaaggaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42084454 |
atatcatcatctcttccccttccatcacactcatatttacattgatataaaggcacatgcatctagcatagttcagttaaattataccaaattaaaggaa |
42084553 |
T |
|
| Q |
208 |
aagtgtgatgaacaaacctcgaaaatctcgaatgaacttcccaagaagtttctcactctgaccattaaaccttccagtaccataagaatcagcagtatca |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42084554 |
aagtgtgatgaacaaacctcgaaaatctcgaatgaacttcccaagaagtttctcactctgaccattaaaccttccagtaccataagaatcagcagtatca |
42084653 |
T |
|
| Q |
308 |
aaaagattaacaccattctcaacagccatgttaaacacttgttgtaggtcatcatccatggattcttgatacccccaaagaagctgattaccccatgccc |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42084654 |
aaaagattaacaccattctcaacagccatgttaaacacttgctgtaggtcatcatccatggattcttgatacccccaaagaagctgattaccccatgccc |
42084753 |
T |
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| Q |
408 |
aagttccaaaacccattggagacacacttagaggccccatcttgagcttttggttttgggtggatggccatagggaagggaatttgaaaggaaaagatgg |
507 |
Q |
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| T |
42084754 |
aagttccaaaacccattggagaaacacttagaggccccatcttgagcttttggttttgggtggatggccatagggaagggaatttgaaagtaaaagatgg |
42084853 |
T |
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| Q |
508 |
taaagggttgttaatgtttgagg-accaacaacaaaactgcagcaagatgagagtgccattgttattgttatgtaacataacacaaaatcagttttggta |
606 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42084854 |
taaagggttgttaatgtttgaggaacaaacaacaaaactgcagcaagatgagagtgccattgttattgttatgtaacataacacaaaatcagttttggta |
42084953 |
T |
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| Q |
607 |
gttaat |
612 |
Q |
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|||||| |
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| T |
42084954 |
gttaat |
42084959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 9836055 - 9836109
Alignment:
| Q |
7 |
acctttgttatagaaatagcttatgcatagacacttatgttttaagtgcttaatt |
61 |
Q |
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|||||||||||| |||||||||||||| | ||||||||| | |||||||||||| |
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| T |
9836055 |
acctttgttatataaatagcttatgcagaaacacttatggtacaagtgcttaatt |
9836109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 21952540 - 21952506
Alignment:
| Q |
10 |
tttgttatagaaatagcttatgcatagacacttat |
44 |
Q |
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|||||||||||||||||||||||||| |||||||| |
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| T |
21952540 |
tttgttatagaaatagcttatgcataaacacttat |
21952506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 37474721 - 37474663
Alignment:
| Q |
10 |
tttgttatagaaatagcttatgcatagacacttatgttttaagtgcttaattgagctat |
68 |
Q |
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|||||||| ||||||| ||||||||| ||||||| | | ||||||||||||| |||||| |
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| T |
37474721 |
tttgttatcgaaatagtttatgcataaacacttaagctataagtgcttaattaagctat |
37474663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 27481397 - 27481433
Alignment:
| Q |
8 |
cctttgttatagaaatagcttatgcatagacacttat |
44 |
Q |
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||||||||||||||||||||||| |||| |||||||| |
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| T |
27481397 |
cctttgttatagaaatagcttatacataaacacttat |
27481433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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