View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0135-INSERTION-8 (Length: 638)
Name: NF0135-INSERTION-8
Description: NF0135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0135-INSERTION-8 |
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Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 49 - 630
Target Start/End: Complemental strand, 12473431 - 12472834
Alignment:
| Q |
49 |
acattgatatatttgaataaacaacatattttagcaaggcacaaatctatccataagcaaacatattgttgactcagataaggttgtagtgtctctttga |
148 |
Q |
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| T |
12473431 |
acattgatatagttgaataaacaacatattttagcaaggcacaaatctatccataagcaaacatattgttgactcagacaaggttgtagtgtctctttga |
12473332 |
T |
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| Q |
149 |
gcacctatgacctccttttgagcttcccttccaacttccttctcttcttctaaaccatttttggatttagaaattttggttttgttggttagaactttct |
248 |
Q |
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| T |
12473331 |
gcacctatgacctccttttgagcttctcttcccacttccttctcttcttctaaaccatttttggatttagaaattttggttttgttggttagaactttct |
12473232 |
T |
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| Q |
249 |
ctttgagcttggctagctctccaatccatacctctaccatggctgccattttattttagtcactctaataaaatgagcaaaaaatatttcc--------- |
339 |
Q |
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| T |
12473231 |
ctttgagcttggctagctctccaatccatacctctaccatggctgccattttattttagtcactctaataaaatgagcaaaaaatatttccttttttttg |
12473132 |
T |
|
| Q |
340 |
---nnnnnnnctttgttgtgagtgatggttgtaatagtagaactatatcaatgtggtttatatagagag--tagagataatgagaatcatttgagagaaa |
434 |
Q |
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| T |
12473131 |
ttgagattttctttgttgtgaatgatggttgtaatagtagaactatatcaatgtggtttatatagagagactagaagtaatgagaatcatttgagagaaa |
12473032 |
T |
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| Q |
435 |
gcgtgtagggctataaaa-ggatgtggatgttttggatcctcttgaatttagtggcacatggaagg-atacaccaatgggaataggatattctttacaat |
532 |
Q |
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| T |
12473031 |
gcgtgtagggttataaaagggatgtggatgttttggatcctcttgaatttagtggcacatggaaggaatacaccaatgggaatgggatattctttacaat |
12472932 |
T |
|
| Q |
533 |
attttattggttgcttttctaattcnnnnnnnctattggttgctcactacttttgcatattcacgttcatattgtactattaccaaaattactgctga |
630 |
Q |
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| T |
12472931 |
attttattggttgcttttctaattctttttttctattggttgctcattacttttgcatattcacgttcatattgtactattaccaaaattactgctga |
12472834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 73 - 206
Target Start/End: Complemental strand, 12457350 - 12457217
Alignment:
| Q |
73 |
catattttagcaaggcacaaatctatccataagcaaacatattgttgactcagataaggttgtagtgtctctttgagcacctatgacctccttttgagct |
172 |
Q |
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||||| |||||| |||||||||||||||||||||||||||||||||||||| || | |||| ||||||||| ||| || |||||| ||||||||||| | |
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| T |
12457350 |
catatattagcagggcacaaatctatccataagcaaacatattgttgactctgaaatagttgcagtgtctctatgaacagctatgatctccttttgagat |
12457251 |
T |
|
| Q |
173 |
tcccttccaacttccttctcttcttctaaaccat |
206 |
Q |
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| | |||| ||||| ||||||||||||||||||| |
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| T |
12457250 |
tgcattccgacttctttctcttcttctaaaccat |
12457217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 12473501 - 12473457
Alignment:
| Q |
6 |
actaattacattatactaaacacaacatatataacatttcattaca |
51 |
Q |
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| T |
12473501 |
actaattacattatactaa-cacaacatatataacatttcattaca |
12473457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 12457197 - 12457138
Alignment:
| Q |
241 |
aactttctctttgagcttggctagctctccaatccatacctctaccatggctgccatttt |
300 |
Q |
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|||||| |||||||||||||||| || ||||||||||| ||||||||||||| |||||| |
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| T |
12457197 |
aactttttctttgagcttggctaattccccaatccatacttctaccatggctgacatttt |
12457138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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