View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0135-INSERTION-9 (Length: 366)

Name: NF0135-INSERTION-9
Description: NF0135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0135-INSERTION-9
NF0135-INSERTION-9
[»] chr7 (3 HSPs)
chr7 (9-366)||(4844600-4844963)
chr7 (222-353)||(4709851-4709983)
chr7 (9-110)||(4710940-4711040)
[»] chr8 (1 HSPs)
chr8 (261-293)||(40409777-40409809)


Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 9 - 366
Target Start/End: Complemental strand, 4844963 - 4844600
Alignment:
Q  9 atttattgtttatatctacattacattaagaagtagaagggaaatttgtgtgaaaacaacactagactttgtcatgaaatagactactttgaaatggtca 108  Q
    |||||||||| |||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4844963 atttattgtt-atatatacattagattgagaagtagaagggaaatttgtgtgaaaacaacactagactttgtcatgaaatagactactttgaaatggtca 4844865  T
Q  109 tatgaggtctttgggagactagtatgaaaccgactactttgaaatggtcggaagatatcatatttgcaatagatgatttccaatggatttggagcgttat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4844864 tatgaggtctttgggagactagtatgaaaccgactactttgaaatggtcggaagatatcatatttgcaatagatgatttccaatggatttggagcgttat 4844765  T
Q  209 tgaacctgagctgatttctcttcgaactttgtgtcatgcatatcggtgacgagtgctataccttgtgtcatgcatcaactttgtg-cagacccttgctta 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4844764 tgaacctgagctgatttctcttcgaactttgtgtcatgcatatcggtgacgagtgctataccttgtgtcatgcatcaactttgtgccagacccttgctta 4844665  T
Q  308 -ctcaagcttaggtccaagc-----aaatgaaatcaaggttacctaaattcatgatgtttcagta 366  Q
     ||||||||| ||| |||||     |||||||||||||||||||||||||||||| |||||||||    
T  4844664 gctcaagctttggttcaagcaaatgaaatgaaatcaaggttacctaaattcatgaagtttcagta 4844600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 222 - 353
Target Start/End: Complemental strand, 4709983 - 4709851
Alignment:
Q  222 atttctcttcgaactttgtgtcatgcatatcggtgacgagtgctataccttgtgtcatgcatcaactttgtgcagacccttgctta-ctcaagcttaggt 320  Q
    ||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| || |   ||||||||| |||| ||||  ||    
T  4709983 atttctctttgaactttgtgtcatgcatatcggtgactggtgctataccttgtgtcatgcatcaactttatggaaggccttgcttagctcatgctttagt 4709884  T
Q  321 ccaagcaaatgaaatcaaggttacctaaattca 353  Q
     ||||||||||||||||| |||| |||||||||    
T  4709883 tcaagcaaatgaaatcaaagttatctaaattca 4709851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 4711040 - 4710940
Alignment:
Q  9 atttattgtttatatctacattacattaagaagtagaagggaaatttgtgtgaaaacaacactaga-ctttgtcatgaaatagactactttgaaatggtc 107  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||   |||||||||||||||||||||||||||||||    
T  4711040 atttattgtt-atatatacattacattaagaagtagaagggaaatttgtgtg-aaacaacactagagacttgtcatgaaatagactactttgaaatggtc 4710943  T
Q  108 ata 110  Q
    |||    
T  4710942 ata 4710940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 293
Target Start/End: Original strand, 40409777 - 40409809
Alignment:
Q  261 gtgctataccttgtgtcatgcatcaactttgtg 293  Q
    ||||| |||||||||||||||||||||||||||    
T  40409777 gtgctgtaccttgtgtcatgcatcaactttgtg 40409809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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