View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0135_low_1 (Length: 660)
Name: NF0135_low_1
Description: NF0135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0135_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 38434923 - 38434496
Alignment:
| Q |
1 |
ggtggaagcaatcgacattaggttgcaaagatgacatatatgcatttatgagtgtctgttgtacttgtgatcatgccaaaatgagatatttttctatgct |
100 |
Q |
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| T |
38434923 |
ggtggaagcaatcgacattaggttgcaacgatgacatatatgcatttatgagtgtctgttgtgcttgtgatcatgccaaaatgagatatttttctatgct |
38434824 |
T |
|
| Q |
101 |
ttaacattttctttagtagtattggcatgactaaaacatattttgctatgcttttacacacatatgaggaaatctggtgtgaaaactttgtcaaggaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38434823 |
ttaacattttctttagtagtattggcatgactaacacatattttgctatgcttttacacacatatgaggaaatctggtgtgaaaactttgtcaaggaaaa |
38434724 |
T |
|
| Q |
201 |
gtgatgaaacctcaagaaattgattgctaactcactactgcaattgaaacgtcctcacactaccatccaaaaacacatgatggacaagtgtaaaacaatg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38434723 |
gtgatgaaacctcaagaaattgattgctaactcactactgcaattgaaacgtcctcacactaccatccaaaaacacatgatggacaagtataaaacaatg |
38434624 |
T |
|
| Q |
301 |
ttccaaggacttcttgaagaaacaatagcttccttatgtaattaactaattattaatttcaatgaaacacagtcaaaagctaaaggtctacttaaatgga |
400 |
Q |
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| T |
38434623 |
ttccaaggacttcttgaagaaacaatagcttccttatg--------tgattattaatttcaatgaaacacagtcaaaagctaaaggtctacttaaattga |
38434532 |
T |
|
| Q |
401 |
ggcttaattgcactttaaactcaccaaatatcatga |
436 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
38434531 |
ggcttaattgcactttaaactcaccaaatatcatga |
38434496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 506 - 565
Target Start/End: Complemental strand, 38434426 - 38434367
Alignment:
| Q |
506 |
gtagtccatctcccgattttgaagcctctcaattttgtctaaaatttactttgagatgat |
565 |
Q |
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|
| T |
38434426 |
gtagtccatctcccgattttgaagcctctcaattttgtctaaaatttactttgagatgat |
38434367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 9816746 - 9816794
Alignment:
| Q |
110 |
tctttagtagtattggcatgactaaaacatattttgctatgcttttaca |
158 |
Q |
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| T |
9816746 |
tctttagtaatattggcatgactaactcatgttttactatgcttttaca |
9816794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 20032735 - 20032689
Alignment:
| Q |
110 |
tctttagtagtattggcatgactaaaacatattttgctatgctttta |
156 |
Q |
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||||||||| ||| |||||||||| ||||||||||||||||||||| |
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|
| T |
20032735 |
tctttagtaagattagcatgactaatacatattttgctatgctttta |
20032689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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