View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0135_low_4 (Length: 209)

Name: NF0135_low_4
Description: NF0135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0135_low_4
NF0135_low_4
[»] chr7 (5 HSPs)
chr7 (100-207)||(48161893-48161999)
chr7 (102-201)||(34390075-34390175)
chr7 (154-199)||(35745747-35745792)
chr7 (105-136)||(6585061-6585092)
chr7 (103-201)||(8745264-8745363)
[»] chr3 (5 HSPs)
chr3 (100-207)||(21342642-21342750)
chr3 (102-201)||(23328218-23328318)
chr3 (100-201)||(45398909-45399011)
chr3 (102-197)||(40023440-40023536)
chr3 (103-167)||(14879581-14879646)
[»] chr4 (3 HSPs)
chr4 (102-201)||(35341207-35341306)
chr4 (102-201)||(31050529-31050629)
chr4 (102-198)||(2825899-2825996)
[»] chr1 (5 HSPs)
chr1 (102-199)||(27031708-27031806)
chr1 (102-201)||(7857766-7857866)
chr1 (103-201)||(24659042-24659140)
chr1 (103-201)||(46814336-46814435)
chr1 (145-201)||(31290933-31290989)
[»] chr2 (5 HSPs)
chr2 (102-201)||(7874404-7874504)
chr2 (102-207)||(14106390-14106496)
chr2 (102-201)||(14405311-14405411)
chr2 (145-201)||(5254369-5254425)
chr2 (102-136)||(7460855-7460889)
[»] chr8 (3 HSPs)
chr8 (102-207)||(15821247-15821353)
chr8 (102-207)||(38577657-38577764)
chr8 (145-199)||(35816155-35816209)


Alignment Details
Target: chr7 (Bit Score: 76; Significance: 2e-35; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 100 - 207
Target Start/End: Original strand, 48161893 - 48161999
Alignment:
Q  100 acgaacacccctcaaaataaaactcccagacttcaacgacaagtcgagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctc 199  Q
    ||||||||| |||| |||||||||| |||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  48161893 acgaacacctctcagaataaaactctcagacttcaacgccaagtcgagccacattcgaaaagct-ctaacccaatgaacaagcaacttccacaacctctc 48161991  T
Q  200 gatctctg 207  Q
    || |||||    
T  48161992 gacctctg 48161999  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 102 - 201
Target Start/End: Complemental strand, 34390175 - 34390075
Alignment:
Q  102 gaacacccctcaaaataaaactcccagacttcaacgac-aagtcgagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctcg 200  Q
    |||||||||||||||||||||||||||||| ||||  | |||| |||||||||| ||||||||||||| | |||||||| ||| ||||||||||||||||    
T  34390175 gaacacccctcaaaataaaactcccagactacaacacccaagttgagccacatttgaaaagctcctaatcgaatgaacatgcagcttccacaacctctcg 34390076  T
Q  201 a 201  Q
    |    
T  34390075 a 34390075  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 35745747 - 35745792
Alignment:
Q  154 tcgaaaagctcctaacctaatgaacaagcaacttccacaacctctc 199  Q
    ||||||||||||||||| |||||||| ||| |||||||||||||||    
T  35745747 tcgaaaagctcctaaccgaatgaacatgcagcttccacaacctctc 35745792  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 105 - 136
Target Start/End: Complemental strand, 6585092 - 6585061
Alignment:
Q  105 cacccctcaaaataaaactcccagacttcaac 136  Q
    ||||||||||||||||||||||||||||||||    
T  6585092 cacccctcaaaataaaactcccagacttcaac 6585061  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 103 - 201
Target Start/End: Complemental strand, 8745363 - 8745264
Alignment:
Q  103 aacacccctcaaaataaaactcccagacttcaacgacaagtc-gagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctcga 201  Q
    ||||||||||||||| |||||||||| ||| |||  |||  | ||||||||| ||||||||||||| |  || || || ||| |||||||||||||||||    
T  8745363 aacacccctcaaaattaaactcccagtcttgaacaccaaagctgagccacatccgaaaagctcctatctgaaagatcatgcagcttccacaacctctcga 8745264  T

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Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 100 - 207
Target Start/End: Complemental strand, 21342750 - 21342642
Alignment:
Q  100 acgaacacccctcaaaataaaactcccagacttcaacgac-aagtcgagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctct 198  Q
    ||||||||||||   |||||||||| |||||||||||  | |||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||    
T  21342750 acgaacaccccttggaataaaactctcagacttcaacacccaagtcgagccacattcgaaaagcttctaaccgaatgaacaagcagcttccacaacctct 21342651  T
Q  199 cgatctctg 207  Q
    ||| |||||    
T  21342650 cgacctctg 21342642  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 102 - 201
Target Start/End: Original strand, 23328218 - 23328318
Alignment:
Q  102 gaacacccctcaaaataaaactcccagacttcaacgac-aagtcgagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctcg 200  Q
    ||||||| |||||||||||||||||||||||||||  | |||  |||||||||||||||||||||||||| |||||||||| | ||||||||||||||||    
T  23328218 gaacaccactcaaaataaaactcccagacttcaacacccaagctgagccacattcgaaaagctcctaaccgaatgaacaaggagcttccacaacctctcg 23328317  T
Q  201 a 201  Q
    |    
T  23328318 a 23328318  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 100 - 201
Target Start/End: Complemental strand, 45399011 - 45398909
Alignment:
Q  100 acgaacacccctcaaaataaaactcccagacttcaacgac-aagtcgagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctct 198  Q
    ||||||||||| ||||||| |||||||| ||||||||  | |||| | |||||||||||||||||| ||||| |||||||| ||| ||||||||||||||    
T  45399011 acgaacaccccacaaaatagaactcccaaacttcaacacctaagttgcgccacattcgaaaagctcataaccgaatgaacatgcagcttccacaacctct 45398912  T
Q  199 cga 201  Q
    |||    
T  45398911 cga 45398909  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 102 - 197
Target Start/End: Original strand, 40023440 - 40023536
Alignment:
Q  102 gaacacccctcaaaataaaactcccagacttcaacgaca-agtcgagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctc 197  Q
    |||| ||||||||||||||||||||||||| ||||  |  ||  |||||||||||||||||||||||||| |||||||| ||| |||||||||||||    
T  40023440 gaacgcccctcaaaataaaactcccagactacaacaccctagctgagccacattcgaaaagctcctaaccgaatgaacatgcagcttccacaacctc 40023536  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 14879646 - 14879581
Alignment:
Q  103 aacacccctcaaaataaaactcccagacttcaacgac-aagtcgagccacattcgaaaagctccta 167  Q
    ||||||||||||||| |||||||||||||| |||  | ||  |||||||||| |||||||||||||    
T  14879646 aacacccctcaaaattaaactcccagacttgaacaccaaacccgagccacatccgaaaagctccta 14879581  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 102 - 201
Target Start/End: Original strand, 35341207 - 35341306
Alignment:
Q  102 gaacacccctcaaaataaaactcccagacttcaacgacaagtcgagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctcga 201  Q
    |||||||||||||||||||||||||| ||||||||  |||   |||||||||||||||||||| ||||  |||||||| ||| |||||||||||||||||    
T  35341207 gaacacccctcaaaataaaactcccaaacttcaacaccaaactgagccacattcgaaaagctcataactgaatgaacatgcagcttccacaacctctcga 35341306  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 102 - 201
Target Start/End: Original strand, 31050529 - 31050629
Alignment:
Q  102 gaacacccctcaaaataaaactcccagacttcaacgac-aagtcgagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctcg 200  Q
    |||||||||||||||||||||  ||||||||||||  | |||   ||||||| ||||||||||||||||| |||||||| ||| ||||||||||||||||    
T  31050529 gaacacccctcaaaataaaacagccagacttcaacacccaagcttagccacaatcgaaaagctcctaaccgaatgaacatgcagcttccacaacctctcg 31050628  T
Q  201 a 201  Q
    |    
T  31050629 a 31050629  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 198
Target Start/End: Complemental strand, 2825996 - 2825899
Alignment:
Q  102 gaacacccctcaaaataaaactcccagacttcaacgacaagtc-gagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctct 198  Q
    |||||||||||||||||||||||||| ||||||||  | |  | || |||| |||||||||||||||||| |||||||| ||| ||||||||||||||    
T  2825996 gaacacccctcaaaataaaactcccaaacttcaacacccaaactgaaccaccttcgaaaagctcctaaccgaatgaacatgcagcttccacaacctct 2825899  T

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Target: chr1 (Bit Score: 55; Significance: 8e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 102 - 199
Target Start/End: Original strand, 27031708 - 27031806
Alignment:
Q  102 gaacacccctcaaaataaaactcccagacttcaacgacaagtc-gagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctc 199  Q
    |||||||||||||||||||||||||||||||||||  | |  | |||||||||||||||||||| ||||| |||||||| ||| |||||||||||||||    
T  27031708 gaacacccctcaaaataaaactcccagacttcaacatccaaactgagccacattcgaaaagctcttaaccgaatgaacatgcagcttccacaacctctc 27031806  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 102 - 201
Target Start/End: Complemental strand, 7857866 - 7857766
Alignment:
Q  102 gaacacccctcaaaataaaactcccagacttcaacgacaagtc-gagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctcg 200  Q
    |||||||||||||||||||||||||||||||||||  | |  | ||||||||||  |||||||||||||| |||| ||||||| ||||||||||||||||    
T  7857866 gaacacccctcaaaataaaactcccagacttcaacacccaaactgagccacatttcaaaagctcctaaccgaatggacaagcagcttccacaacctctcg 7857767  T
Q  201 a 201  Q
    |    
T  7857766 a 7857766  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 103 - 201
Target Start/End: Complemental strand, 24659140 - 24659042
Alignment:
Q  103 aacacccctcaaaataaaactcccagacttcaacgacaagtc-gagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctcga 201  Q
    |||||||||||||||||||||||||||||| |||  | || | ||||||||||||||||||| |||||| |||||||| |   |||||||||||||||||    
T  24659140 aacacccctcaaaataaaactcccagactt-aactcccaggctgagccacattcgaaaagcttctaaccgaatgaacatgatgcttccacaacctctcga 24659042  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 103 - 201
Target Start/End: Original strand, 46814336 - 46814435
Alignment:
Q  103 aacacccctcaaaataaaactcccagacttcaacgacaa-gtcgagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctcga 201  Q
    |||||||||| |||||||||||||| ||||||||  | | | ||||||||||||||||||||||||| | |||||||  ||| ||||  |||||||||||    
T  46814336 aacacccctcgaaataaaactcccatacttcaacacccacgccgagccacattcgaaaagctcctaatcgaatgaacttgcagcttctgcaacctctcga 46814435  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 31290933 - 31290989
Alignment:
Q  145 gagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctcga 201  Q
    ||||||||| ||||||||||||| || || || |||||||||||||| |||||||||    
T  31290933 gagccacatccgaaaagctcctatccgaaagatcaagcaacttccaccacctctcga 31290989  T

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Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 102 - 201
Target Start/End: Complemental strand, 7874504 - 7874404
Alignment:
Q  102 gaacacccctcaaaataaaactcccagacttcaacgac-aagtcgagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctcg 200  Q
    ||||| |||||||||||||||||| ||||||||||  | |||  |||||||||||||||||||||||||| |||||||||| |  |||||||||||||||    
T  7874504 gaacatccctcaaaataaaactccaagacttcaacacccaagctgagccacattcgaaaagctcctaaccaaatgaacaagtagtttccacaacctctcg 7874405  T
Q  201 a 201  Q
    |    
T  7874404 a 7874404  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 102 - 207
Target Start/End: Original strand, 14106390 - 14106496
Alignment:
Q  102 gaacacccctcaaaataaaactcccagacttcaacgac-aagtcgagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctcg 200  Q
    ||||||||||||||||||||||| |||||||||||  | |||  |||||||||||| ||||||| ||||| ||||| ||  |||||||||||||||||||    
T  14106390 gaacacccctcaaaataaaactctcagacttcaacacccaagctgagccacattcgtaaagctcttaaccgaatgatcatacaacttccacaacctctcg 14106489  T
Q  201 atctctg 207  Q
    | |||||    
T  14106490 acctctg 14106496  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 102 - 201
Target Start/End: Complemental strand, 14405411 - 14405311
Alignment:
Q  102 gaacacccctcaaaataaaactcccagacttcaacgac-aagtcgagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctcg 200  Q
    ||||| |||||||||||||||||||||||||||||  | |||||||||||||| ||| |||||||||||| |||||||  |||  |||||||||| ||||    
T  14405411 gaacatccctcaaaataaaactcccagacttcaacacccaagtcgagccacatgcgacaagctcctaaccaaatgaacgtgcagtttccacaaccactcg 14405312  T
Q  201 a 201  Q
    |    
T  14405311 a 14405311  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 5254425 - 5254369
Alignment:
Q  145 gagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctcga 201  Q
    ||||||||||||||||||||| |||| |||||||| ||| |||||||||||||||||    
T  5254425 gagccacattcgaaaagctccaaaccgaatgaacatgcagcttccacaacctctcga 5254369  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 102 - 136
Target Start/End: Complemental strand, 7460889 - 7460855
Alignment:
Q  102 gaacacccctcaaaataaaactcccagacttcaac 136  Q
    |||||||||||||||||||||||||||||||||||    
T  7460889 gaacacccctcaaaataaaactcccagacttcaac 7460855  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 102 - 207
Target Start/End: Original strand, 15821247 - 15821353
Alignment:
Q  102 gaacacccctcaaaataaaactcccagacttcaacgaca-agtcgagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctcg 200  Q
    |||||| ||||||||||||||||||||||||||||  |  ||  |||||||||||||||||||||||||| ||||||||||    |||||||||||||||    
T  15821247 gaacactcctcaaaataaaactcccagacttcaacatccgagctgagccacattcgaaaagctcctaaccaaatgaacaagttgtttccacaacctctcg 15821346  T
Q  201 atctctg 207  Q
    | |||||    
T  15821347 acctctg 15821353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 102 - 207
Target Start/End: Original strand, 38577657 - 38577764
Alignment:
Q  102 gaacacccctcaaaataaaactccc-agacttcaacgac-aagtcgagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctc 199  Q
    |||||| || ||||||||||||||| ||||||||||  | |||| | |||| |||||||||||||| |||| |||||||| ||| ||||||||| |||||    
T  38577657 gaacactccacaaaataaaactccccagacttcaacacccaagttgcgccatattcgaaaagctccaaaccgaatgaacatgcagcttccacaaactctc 38577756  T
Q  200 gatctctg 207  Q
    || |||||    
T  38577757 gacctctg 38577764  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 35816155 - 35816209
Alignment:
Q  145 gagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctc 199  Q
    |||||||||||||||| ||| ||||| |||||||| ||| ||||||||| |||||    
T  35816155 gagccacattcgaaaaactcttaaccgaatgaacatgcagcttccacaatctctc 35816209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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