View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0136_low_2 (Length: 283)
Name: NF0136_low_2
Description: NF0136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0136_low_2 |
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| [»] scaffold0769 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 29312191 - 29312395
Alignment:
| Q |
22 |
gatgaaataaaagtggctggatataagcctgactctgatcatgttcttcatgatattgatcaagaggaaaaagctgagaatctttatgaccatagtgaga |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29312191 |
gatgaaataaaagtggctggatataagcctgactctgatcatgttcttcatgatattgatcaagaggaaaaagctgagaatctttatgaccatagtgaga |
29312290 |
T |
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| Q |
122 |
agcttgcggttgcattcgggatacttaatttgaatggacagtcgatgatatggtttataagaatttgagaatatgtggtgattgtcacaatgccattaag |
221 |
Q |
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| T |
29312291 |
agcttgcggttgcattcgggatacttaatttgaatggacagtcgatgatatggtttataagaatttgagaatatgtggtgattgtcacaatgccattaag |
29312390 |
T |
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| Q |
222 |
tatat |
226 |
Q |
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||||| |
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| T |
29312391 |
tatat |
29312395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 26 - 226
Target Start/End: Complemental strand, 34635670 - 34635471
Alignment:
| Q |
26 |
aaataaaagtggctggatataagcctgactctgatcatgttcttcatgatattgatcaagaggaaaaagctgagaatctttatgaccatagtgagaagct |
125 |
Q |
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||||||||| |||||||||||||| ||| ||||| ||||||| ||||||||||||||||||||||||| ||||| ||||| | | |||||||||||||| |
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| T |
34635670 |
aaataaaagcggctggatataagc--gacactgataatgttctgcatgatattgatcaagaggaaaaagttgagagtctttgtaagcatagtgagaagct |
34635573 |
T |
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| Q |
126 |
tgcggttgcattcgggatacttaatttgaatggacagtcgatgatatg-gtttataagaatttgagaatatgtggtgattgtcacaatgccattaagtat |
224 |
Q |
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| T |
34635572 |
tgccgttgcatttgggatacttaatttgaatgggcagtcgacgatacgagtttttaagaatttgagaatatgtggtgattgtcacaatgccattaagtat |
34635473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 29 - 226
Target Start/End: Complemental strand, 29054828 - 29054633
Alignment:
| Q |
29 |
taaaagtggctggatataagcctgactctgatcatgttcttcatgatattgatcaagaggaaaaagctgagaatctttatgaccatagtgagaagcttgc |
128 |
Q |
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|||||||||| ||||||||| ||||| ||||| |||||||| ||||||| || |||||||||| |||||||||||| | ||||||||||||||||||| |
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| T |
29054828 |
taaaagtggccggatataaggctgacactgattatgttcttggtgatattaat--agaggaaaaaactgagaatctttgtaaccatagtgagaagcttgc |
29054731 |
T |
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| Q |
129 |
ggttgcattcgggatacttaatttgaatggacagtcgatgatatggtttataagaatttgagaatatgtggtgattgtcacaatgccattaagtatat |
226 |
Q |
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| T |
29054730 |
tgttgcatttgggatacttaatttgaatggacagtcgacaatgcggtttttaaaaatttgagaatatgtggtgattgtcacaatgccatttagtatat |
29054633 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 26 - 226
Target Start/End: Complemental strand, 13792563 - 13792362
Alignment:
| Q |
26 |
aaataaaagtggctggatataagcctgactctgatcatgttcttcatgatattgatcaagaggaaaaagctgagaatctttatgaccatagtgagaagct |
125 |
Q |
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||||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| ||||| | |||||||||||||||| |
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| T |
13792563 |
aaataaaagcggctggatataagcctgacactgattatgttctgcatgatattgatcaagaggaaaaagctgagagtctttgtaaccatagtgagaagct |
13792464 |
T |
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| Q |
126 |
tgcggttgcattcgggatacttaatttgaatggacagtcgatgata-tggtttataagaatttgagaatatgtggtgattgtcacaatgccattaagtat |
224 |
Q |
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||| |||||||| |||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13792463 |
tgctgttgcatttgggatacttaatttgaatggacagtcgacgatacgggtttttaagaatttgagaatatgtggtgattgtcataatgccattaagtat |
13792364 |
T |
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| Q |
225 |
at |
226 |
Q |
| |
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|| |
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| T |
13792363 |
at |
13792362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 26 - 226
Target Start/End: Original strand, 28743679 - 28743880
Alignment:
| Q |
26 |
aaataaaagtggctggatataagcctgactctgatcatgttcttcatgatattgatcaagaggaaaaagctgagaatctttatgaccatagtgagaagct |
125 |
Q |
| |
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|||| ||| |||||||||||||||||||| ||||| ||||||| || |||||||||||||||||||||||||||| ||| | | |||||||||||||||| |
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| T |
28743679 |
aaatgaaaatggctggatataagcctgacactgattatgttctgcaagatattgatcaagaggaaaaagctgagagtctctgtaaccatagtgagaagct |
28743778 |
T |
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| Q |
126 |
tgcggttgcattcgggatacttaatttgaatggacagtcgatgata-tggtttataagaatttgagaatatgtggtgattgtcacaatgccattaagtat |
224 |
Q |
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||| ||||| || |||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28743779 |
tgctgttgcctttgggatacttaatttgaatggacagtcgacaatacgggtttttaagaatttgagaatatgcggtgattgtcacaatgccattaagtat |
28743878 |
T |
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| Q |
225 |
at |
226 |
Q |
| |
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|| |
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| T |
28743879 |
at |
28743880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0769 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold0769
Description:
Target: scaffold0769; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 26 - 226
Target Start/End: Original strand, 4244 - 4443
Alignment:
| Q |
26 |
aaataaaagtggctggatataagcctgactctgatcatgttcttcatgatattgatcaagaggaaaaagctgagaatctttatgaccatagtgagaagct |
125 |
Q |
| |
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||||||||| |||||||||||||| ||| ||||| ||||||| ||||||||||||||||||||||||| ||||| ||||| | | |||||||||||||| |
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| T |
4244 |
aaataaaagcggctggatataagc--gacactgataatgttctgcatgatattgatcaagaggaaaaagttgagagtctttgtaagcatagtgagaagct |
4341 |
T |
|
| Q |
126 |
tgcggttgcattcgggatacttaatttgaatggacagtcgatgatatg-gtttataagaatttgagaatatgtggtgattgtcacaatgccattaagtat |
224 |
Q |
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||| |||||||| |||||||||||||||||||| ||||||| |||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4342 |
tgccgttgcatttgggatacttaatttgaatgggcagtcgacgatacgagtttttaagaatttgagaatatgtggtgattgtcacaatgccattaagtat |
4441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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