View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0139_high_1 (Length: 202)
Name: NF0139_high_1
Description: NF0139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0139_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 4761478 - 4761652
Alignment:
| Q |
1 |
taataattaataattacattataattaaggttgcgtttatacccaattgttctatgaaaaggacatattcatacacgcaattgaaatcgttaccacaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4761478 |
taataattaataattacattataattaaggttgcgtttatacccaattgttcaatgaaaaggacat--tcatacacgcaattgaaatcgttaccacaaga |
4761575 |
T |
|
| Q |
101 |
caagacaacatcattcataacacaatggttcttttcagtcctattaaaattaaattgaggtacaagaaacatttgat |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4761576 |
caagacaacatcattcataacacaatggttcttttcagtcctattaaaattaaattgaggtacaagaaacatttgat |
4761652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1573 times since January 2019
Visitors: 1425