View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0141_low_1 (Length: 458)
Name: NF0141_low_1
Description: NF0141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0141_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 134 - 371
Target Start/End: Complemental strand, 34452302 - 34452065
Alignment:
| Q |
134 |
aaccttacataacaaagcctacccaaacagtattaaccatgttacatgtaaactgttcctttcatcaattttaggtaaagaatctaaaaggatctaaagt |
233 |
Q |
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| T |
34452302 |
aaccttacataacaaagcctacccaaacagtattaaccatgttacatgtaaactgttcctttcatcaattttatgtaaagaatctaaaaggatctaaagt |
34452203 |
T |
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| Q |
234 |
aaataataaagattaagattcattgcttattgaagaaaaaaggattaaagattcatttcatccacaaaataaaatgagacaaggaaaggatgttattgtg |
333 |
Q |
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| T |
34452202 |
aaataataaagattaagattcattgcttattgaagaaaaaaggattaaagattcatttcatccacaaaataaaatgagacaaggaaaggatgttattgtg |
34452103 |
T |
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| Q |
334 |
atgcnnnnnnnnngtttgatctttgtgaattgatgatg |
371 |
Q |
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|||| | ||||||||||||||||||||||| |
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| T |
34452102 |
atgcaaaaaaaaagcttgatctttgtgaattgatgatg |
34452065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 34452434 - 34452387
Alignment:
| Q |
1 |
tccatcttacttttcatggaagaaagagtgagagaaattcaaatgtaa |
48 |
Q |
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| T |
34452434 |
tccatcttacttttcatggaagaaagagtgagagaaattcaaatgtaa |
34452387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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