View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0141_low_2 (Length: 208)

Name: NF0141_low_2
Description: NF0141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0141_low_2
NF0141_low_2
[»] chr7 (5 HSPs)
chr7 (99-206)||(48161893-48161999)
chr7 (101-200)||(34390075-34390175)
chr7 (153-198)||(35745747-35745792)
chr7 (104-135)||(6585061-6585092)
chr7 (102-200)||(8745264-8745363)
[»] chr3 (5 HSPs)
chr3 (99-206)||(21342642-21342750)
chr3 (101-200)||(23328218-23328318)
chr3 (99-200)||(45398909-45399011)
chr3 (101-196)||(40023440-40023536)
chr3 (102-166)||(14879581-14879646)
[»] chr4 (3 HSPs)
chr4 (101-200)||(35341207-35341306)
chr4 (101-200)||(31050529-31050629)
chr4 (101-197)||(2825899-2825996)
[»] chr1 (5 HSPs)
chr1 (101-198)||(27031708-27031806)
chr1 (101-200)||(7857766-7857866)
chr1 (102-200)||(24659042-24659140)
chr1 (102-200)||(46814336-46814435)
chr1 (144-200)||(31290933-31290989)
[»] chr2 (5 HSPs)
chr2 (101-200)||(7874404-7874504)
chr2 (101-206)||(14106390-14106496)
chr2 (101-200)||(14405311-14405411)
chr2 (144-200)||(5254369-5254425)
chr2 (101-135)||(7460855-7460889)
[»] chr8 (3 HSPs)
chr8 (101-206)||(15821247-15821353)
chr8 (101-206)||(38577657-38577764)
chr8 (144-198)||(35816155-35816209)


Alignment Details
Target: chr7 (Bit Score: 76; Significance: 2e-35; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 99 - 206
Target Start/End: Original strand, 48161893 - 48161999
Alignment:
Q  99 acgaacacccctcaaaataaaactcccagacttcaacgacaagtcgagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctc 198  Q
    ||||||||| |||| |||||||||| |||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  48161893 acgaacacctctcagaataaaactctcagacttcaacgccaagtcgagccacattcgaaaagct-ctaacccaatgaacaagcaacttccacaacctctc 48161991  T
Q  199 gatctctg 206  Q
    || |||||    
T  48161992 gacctctg 48161999  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 101 - 200
Target Start/End: Complemental strand, 34390175 - 34390075
Alignment:
Q  101 gaacacccctcaaaataaaactcccagacttcaacgac-aagtcgagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctcg 199  Q
    |||||||||||||||||||||||||||||| ||||  | |||| |||||||||| ||||||||||||| | |||||||| ||| ||||||||||||||||    
T  34390175 gaacacccctcaaaataaaactcccagactacaacacccaagttgagccacatttgaaaagctcctaatcgaatgaacatgcagcttccacaacctctcg 34390076  T
Q  200 a 200  Q
    |    
T  34390075 a 34390075  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 35745747 - 35745792
Alignment:
Q  153 tcgaaaagctcctaacctaatgaacaagcaacttccacaacctctc 198  Q
    ||||||||||||||||| |||||||| ||| |||||||||||||||    
T  35745747 tcgaaaagctcctaaccgaatgaacatgcagcttccacaacctctc 35745792  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 135
Target Start/End: Complemental strand, 6585092 - 6585061
Alignment:
Q  104 cacccctcaaaataaaactcccagacttcaac 135  Q
    ||||||||||||||||||||||||||||||||    
T  6585092 cacccctcaaaataaaactcccagacttcaac 6585061  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 200
Target Start/End: Complemental strand, 8745363 - 8745264
Alignment:
Q  102 aacacccctcaaaataaaactcccagacttcaacgacaagtc-gagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctcga 200  Q
    ||||||||||||||| |||||||||| ||| |||  |||  | ||||||||| ||||||||||||| |  || || || ||| |||||||||||||||||    
T  8745363 aacacccctcaaaattaaactcccagtcttgaacaccaaagctgagccacatccgaaaagctcctatctgaaagatcatgcagcttccacaacctctcga 8745264  T

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Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 99 - 206
Target Start/End: Complemental strand, 21342750 - 21342642
Alignment:
Q  99 acgaacacccctcaaaataaaactcccagacttcaacgac-aagtcgagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctct 197  Q
    ||||||||||||   |||||||||| |||||||||||  | |||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||    
T  21342750 acgaacaccccttggaataaaactctcagacttcaacacccaagtcgagccacattcgaaaagcttctaaccgaatgaacaagcagcttccacaacctct 21342651  T
Q  198 cgatctctg 206  Q
    ||| |||||    
T  21342650 cgacctctg 21342642  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 101 - 200
Target Start/End: Original strand, 23328218 - 23328318
Alignment:
Q  101 gaacacccctcaaaataaaactcccagacttcaacgac-aagtcgagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctcg 199  Q
    ||||||| |||||||||||||||||||||||||||  | |||  |||||||||||||||||||||||||| |||||||||| | ||||||||||||||||    
T  23328218 gaacaccactcaaaataaaactcccagacttcaacacccaagctgagccacattcgaaaagctcctaaccgaatgaacaaggagcttccacaacctctcg 23328317  T
Q  200 a 200  Q
    |    
T  23328318 a 23328318  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 99 - 200
Target Start/End: Complemental strand, 45399011 - 45398909
Alignment:
Q  99 acgaacacccctcaaaataaaactcccagacttcaacgac-aagtcgagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctct 197  Q
    ||||||||||| ||||||| |||||||| ||||||||  | |||| | |||||||||||||||||| ||||| |||||||| ||| ||||||||||||||    
T  45399011 acgaacaccccacaaaatagaactcccaaacttcaacacctaagttgcgccacattcgaaaagctcataaccgaatgaacatgcagcttccacaacctct 45398912  T
Q  198 cga 200  Q
    |||    
T  45398911 cga 45398909  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 101 - 196
Target Start/End: Original strand, 40023440 - 40023536
Alignment:
Q  101 gaacacccctcaaaataaaactcccagacttcaacgaca-agtcgagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctc 196  Q
    |||| ||||||||||||||||||||||||| ||||  |  ||  |||||||||||||||||||||||||| |||||||| ||| |||||||||||||    
T  40023440 gaacgcccctcaaaataaaactcccagactacaacaccctagctgagccacattcgaaaagctcctaaccgaatgaacatgcagcttccacaacctc 40023536  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 14879646 - 14879581
Alignment:
Q  102 aacacccctcaaaataaaactcccagacttcaacgac-aagtcgagccacattcgaaaagctccta 166  Q
    ||||||||||||||| |||||||||||||| |||  | ||  |||||||||| |||||||||||||    
T  14879646 aacacccctcaaaattaaactcccagacttgaacaccaaacccgagccacatccgaaaagctccta 14879581  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 101 - 200
Target Start/End: Original strand, 35341207 - 35341306
Alignment:
Q  101 gaacacccctcaaaataaaactcccagacttcaacgacaagtcgagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctcga 200  Q
    |||||||||||||||||||||||||| ||||||||  |||   |||||||||||||||||||| ||||  |||||||| ||| |||||||||||||||||    
T  35341207 gaacacccctcaaaataaaactcccaaacttcaacaccaaactgagccacattcgaaaagctcataactgaatgaacatgcagcttccacaacctctcga 35341306  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 101 - 200
Target Start/End: Original strand, 31050529 - 31050629
Alignment:
Q  101 gaacacccctcaaaataaaactcccagacttcaacgac-aagtcgagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctcg 199  Q
    |||||||||||||||||||||  ||||||||||||  | |||   ||||||| ||||||||||||||||| |||||||| ||| ||||||||||||||||    
T  31050529 gaacacccctcaaaataaaacagccagacttcaacacccaagcttagccacaatcgaaaagctcctaaccgaatgaacatgcagcttccacaacctctcg 31050628  T
Q  200 a 200  Q
    |    
T  31050629 a 31050629  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 197
Target Start/End: Complemental strand, 2825996 - 2825899
Alignment:
Q  101 gaacacccctcaaaataaaactcccagacttcaacgacaagtc-gagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctct 197  Q
    |||||||||||||||||||||||||| ||||||||  | |  | || |||| |||||||||||||||||| |||||||| ||| ||||||||||||||    
T  2825996 gaacacccctcaaaataaaactcccaaacttcaacacccaaactgaaccaccttcgaaaagctcctaaccgaatgaacatgcagcttccacaacctct 2825899  T

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Target: chr1 (Bit Score: 55; Significance: 8e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 101 - 198
Target Start/End: Original strand, 27031708 - 27031806
Alignment:
Q  101 gaacacccctcaaaataaaactcccagacttcaacgacaagtc-gagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctc 198  Q
    |||||||||||||||||||||||||||||||||||  | |  | |||||||||||||||||||| ||||| |||||||| ||| |||||||||||||||    
T  27031708 gaacacccctcaaaataaaactcccagacttcaacatccaaactgagccacattcgaaaagctcttaaccgaatgaacatgcagcttccacaacctctc 27031806  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 101 - 200
Target Start/End: Complemental strand, 7857866 - 7857766
Alignment:
Q  101 gaacacccctcaaaataaaactcccagacttcaacgacaagtc-gagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctcg 199  Q
    |||||||||||||||||||||||||||||||||||  | |  | ||||||||||  |||||||||||||| |||| ||||||| ||||||||||||||||    
T  7857866 gaacacccctcaaaataaaactcccagacttcaacacccaaactgagccacatttcaaaagctcctaaccgaatggacaagcagcttccacaacctctcg 7857767  T
Q  200 a 200  Q
    |    
T  7857766 a 7857766  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 102 - 200
Target Start/End: Complemental strand, 24659140 - 24659042
Alignment:
Q  102 aacacccctcaaaataaaactcccagacttcaacgacaagtc-gagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctcga 200  Q
    |||||||||||||||||||||||||||||| |||  | || | ||||||||||||||||||| |||||| |||||||| |   |||||||||||||||||    
T  24659140 aacacccctcaaaataaaactcccagactt-aactcccaggctgagccacattcgaaaagcttctaaccgaatgaacatgatgcttccacaacctctcga 24659042  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 102 - 200
Target Start/End: Original strand, 46814336 - 46814435
Alignment:
Q  102 aacacccctcaaaataaaactcccagacttcaacgacaa-gtcgagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctcga 200  Q
    |||||||||| |||||||||||||| ||||||||  | | | ||||||||||||||||||||||||| | |||||||  ||| ||||  |||||||||||    
T  46814336 aacacccctcgaaataaaactcccatacttcaacacccacgccgagccacattcgaaaagctcctaatcgaatgaacttgcagcttctgcaacctctcga 46814435  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 31290933 - 31290989
Alignment:
Q  144 gagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctcga 200  Q
    ||||||||| ||||||||||||| || || || |||||||||||||| |||||||||    
T  31290933 gagccacatccgaaaagctcctatccgaaagatcaagcaacttccaccacctctcga 31290989  T

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Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 101 - 200
Target Start/End: Complemental strand, 7874504 - 7874404
Alignment:
Q  101 gaacacccctcaaaataaaactcccagacttcaacgac-aagtcgagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctcg 199  Q
    ||||| |||||||||||||||||| ||||||||||  | |||  |||||||||||||||||||||||||| |||||||||| |  |||||||||||||||    
T  7874504 gaacatccctcaaaataaaactccaagacttcaacacccaagctgagccacattcgaaaagctcctaaccaaatgaacaagtagtttccacaacctctcg 7874405  T
Q  200 a 200  Q
    |    
T  7874404 a 7874404  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 206
Target Start/End: Original strand, 14106390 - 14106496
Alignment:
Q  101 gaacacccctcaaaataaaactcccagacttcaacgac-aagtcgagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctcg 199  Q
    ||||||||||||||||||||||| |||||||||||  | |||  |||||||||||| ||||||| ||||| ||||| ||  |||||||||||||||||||    
T  14106390 gaacacccctcaaaataaaactctcagacttcaacacccaagctgagccacattcgtaaagctcttaaccgaatgatcatacaacttccacaacctctcg 14106489  T
Q  200 atctctg 206  Q
    | |||||    
T  14106490 acctctg 14106496  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 101 - 200
Target Start/End: Complemental strand, 14405411 - 14405311
Alignment:
Q  101 gaacacccctcaaaataaaactcccagacttcaacgac-aagtcgagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctcg 199  Q
    ||||| |||||||||||||||||||||||||||||  | |||||||||||||| ||| |||||||||||| |||||||  |||  |||||||||| ||||    
T  14405411 gaacatccctcaaaataaaactcccagacttcaacacccaagtcgagccacatgcgacaagctcctaaccaaatgaacgtgcagtttccacaaccactcg 14405312  T
Q  200 a 200  Q
    |    
T  14405311 a 14405311  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 5254425 - 5254369
Alignment:
Q  144 gagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctcga 200  Q
    ||||||||||||||||||||| |||| |||||||| ||| |||||||||||||||||    
T  5254425 gagccacattcgaaaagctccaaaccgaatgaacatgcagcttccacaacctctcga 5254369  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 101 - 135
Target Start/End: Complemental strand, 7460889 - 7460855
Alignment:
Q  101 gaacacccctcaaaataaaactcccagacttcaac 135  Q
    |||||||||||||||||||||||||||||||||||    
T  7460889 gaacacccctcaaaataaaactcccagacttcaac 7460855  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 206
Target Start/End: Original strand, 15821247 - 15821353
Alignment:
Q  101 gaacacccctcaaaataaaactcccagacttcaacgaca-agtcgagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctcg 199  Q
    |||||| ||||||||||||||||||||||||||||  |  ||  |||||||||||||||||||||||||| ||||||||||    |||||||||||||||    
T  15821247 gaacactcctcaaaataaaactcccagacttcaacatccgagctgagccacattcgaaaagctcctaaccaaatgaacaagttgtttccacaacctctcg 15821346  T
Q  200 atctctg 206  Q
    | |||||    
T  15821347 acctctg 15821353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 206
Target Start/End: Original strand, 38577657 - 38577764
Alignment:
Q  101 gaacacccctcaaaataaaactccc-agacttcaacgac-aagtcgagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctc 198  Q
    |||||| || ||||||||||||||| ||||||||||  | |||| | |||| |||||||||||||| |||| |||||||| ||| ||||||||| |||||    
T  38577657 gaacactccacaaaataaaactccccagacttcaacacccaagttgcgccatattcgaaaagctccaaaccgaatgaacatgcagcttccacaaactctc 38577756  T
Q  199 gatctctg 206  Q
    || |||||    
T  38577757 gacctctg 38577764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 35816155 - 35816209
Alignment:
Q  144 gagccacattcgaaaagctcctaacctaatgaacaagcaacttccacaacctctc 198  Q
    |||||||||||||||| ||| ||||| |||||||| ||| ||||||||| |||||    
T  35816155 gagccacattcgaaaaactcttaaccgaatgaacatgcagcttccacaatctctc 35816209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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