View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0142_low_1 (Length: 250)
Name: NF0142_low_1
Description: NF0142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0142_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 30 - 246
Target Start/End: Complemental strand, 34069863 - 34069647
Alignment:
| Q |
30 |
ggaggtatatttaaaagccgatattacagaggtaaatctttccaaagacttctcagctatttgtgaataatggcctaaatgggaaatgtttgttccaaat |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34069863 |
ggaggtatatttaaaagccgatattacagaggtaaatctttccaaagacttctcagctatttgtgaatagtggcctaaatgggaaatgtttgttccaaat |
34069764 |
T |
|
| Q |
130 |
ttttcttcttcagcactattttctttgaatgggccgccaacattgtgatcagatcagagcaacctaaactgaagaaatatcagaattcagagatgcttct |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34069763 |
ttttcttcttcagcactattttctttgaatgggccgccaacattgtgatcagatcagagcaacctaaactcaagaaatatcagaattcagagatgcttct |
34069664 |
T |
|
| Q |
230 |
ttcatgaatatagctat |
246 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
34069663 |
ttcatgattatagctat |
34069647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 31 - 249
Target Start/End: Original strand, 36385295 - 36385509
Alignment:
| Q |
31 |
gaggtatatttaaaagccgatattacagaggtaaatctttccaaagacttctcagctatttgtgaataatggcctaaatgggaaatgtttgttccaaatt |
130 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
36385295 |
gaggtatatttataagccgatattacagaggcaaatctttccaaagacttctcagatatttgtgaataatggcctaaatgggaaatgttggttccaaatt |
36385394 |
T |
|
| Q |
131 |
tttcttcttcagcactattttctttgaatgggccgccaacattgtgatcagatcagagcaacctaaactgaagaaatatcagaattcagagatgctt-ct |
229 |
Q |
| |
|
||||||||| ||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||| || |
|
|
| T |
36385395 |
tttcttcttgagcactattctctttgaatggcccgccaacattgt-----gatcagagcaacctaaatttaagaaatatcagaattcagagatgcttcct |
36385489 |
T |
|
| Q |
230 |
ttcatgaatatagctatatt |
249 |
Q |
| |
|
||||||| |||| ||||||| |
|
|
| T |
36385490 |
ttcatgattataactatatt |
36385509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1625 times since January 2019
Visitors: 1426