View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0144-INSERTION-1 (Length: 651)
Name: NF0144-INSERTION-1
Description: NF0144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0144-INSERTION-1 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 8 - 651
Target Start/End: Original strand, 28624998 - 28625642
Alignment:
| Q |
8 |
acgatgtgtcccaatttaaatttgtgaattggccctgaacnnnnnnnnnnnnnnnaaaatagtccatcaaagtttaagaacggagagttgtattacttta |
107 |
Q |
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| T |
28624998 |
acgatgtgtcccaatttaaatttgtgaattggccctgaactttttaattttttttaaaatagtccatcaaagtttaagaacggagagttgtattacttta |
28625097 |
T |
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| Q |
108 |
tccaaccaaaattaatcaaaatgnnnnnnnttcaattcaaacatttgaattgtctaaaattctaattcttctagaactttcaattaatgtgtgtttggnn |
207 |
Q |
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| T |
28625098 |
tccaaccaaaattaatcaaaatgaaaaaaattcaattcaaacatttgaattgtctaaagttctaattcttctagaactttcaattaatgtgtgtttggaa |
28625197 |
T |
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| Q |
208 |
nnnnngaatttcttcaagaaatataattttagagggtaatttaaattcttcattgtaaattctcatatttggatagtatatcggagaattttcaaaataa |
307 |
Q |
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| T |
28625198 |
aaaaagaatttcttcaagaaatataattttagagggtaatttaaattcttcattgtaaattctcatatttggatagtatatcggagaattttcaaaataa |
28625297 |
T |
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| Q |
308 |
agatgtttatgaagcattttgctaattatcttcgagatatctttgagttgcatagccattttaaattggtttcataatgtcatattatcgtcaaagaact |
407 |
Q |
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| T |
28625298 |
agatgtttatgaagcattttgctaattatcttcgagatatctttgagttgcatagccattttaaattggtttcataatgtcatattatcgtcaaagaact |
28625397 |
T |
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| Q |
408 |
cttaaataattcatctacatttttctctaatagcaaaacaagaccttaagcaactcatagtaatgcacttcttttttgtttattttgattatattgaaca |
507 |
Q |
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| T |
28625398 |
cttaaataattcatctacatttttctctaatagcaaaacaagaccttaagcaactcatagtaatgcacttcttttttgtttattttgattatattgaaca |
28625497 |
T |
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| Q |
508 |
taaaaagttgttgatttataataataaaaatgcttaatcataacagtcatctatgtcatgcagagaaaaagtaaagaaagttggttatgtttaagcaacc |
607 |
Q |
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| T |
28625498 |
taaaaagtagttgatttataataataaaaatgcttaatcataacaatcatctatgtcatgcagagaaaaagtaaagaaagttggttatgtttaagcaacc |
28625597 |
T |
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| Q |
608 |
aataaacaaatagcact-aagttgcacttaaaatatgtggtatta |
651 |
Q |
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| T |
28625598 |
aataaacaaatagcactgaagttgctcttaaaatatgtggtatta |
28625642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 28278807 - 28278852
Alignment:
| Q |
231 |
taattttagagggtaatttaaattcttcattgtaaattctcatattt |
277 |
Q |
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| T |
28278807 |
taattttagagggtaatttaatttcttcaatgtaaatt-tcatattt |
28278852 |
T |
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