View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0144-INSERTION-4 (Length: 432)
Name: NF0144-INSERTION-4
Description: NF0144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0144-INSERTION-4 |
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| [»] chr8 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 8 - 432
Target Start/End: Complemental strand, 29447950 - 29447527
Alignment:
| Q |
8 |
aaaccgagccaatatataatgaaacttacttacaaaagcatccttcaaaaatgcgagcgctagagcatgtcatccaaaatatgaaaactgaagtcatata |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29447950 |
aaaccgagccaatatataatgaaacttacttacaaaagcatccttcaaaaatgcgagcgctagagcatgtcatccaaaatatgaaaaccgaagtcatata |
29447851 |
T |
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| Q |
108 |
tatgaacataagtagacttacagattacagaaaagacggacatccttcagtataccgaaaagattacaagacatcaatgaagcagaactcttcttcgcta |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29447850 |
tatgaacataagtagacttacagattacagaaaagacggacatccttcagtataccgaaaagattacaagacatcaatgaagcagaactcttcttcgcta |
29447751 |
T |
|
| Q |
208 |
tacgaagattgcagccattggtgtttgcctggagtaccagatacttggaatgaattgttatatgtttctctcttaaaatatggaaagggaacttggaaaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29447750 |
tacgaagattgcagccattggtgtttgcctggagtaccagatacttggaatgaattgttatatgtttctctcttaaaatatggaaagggaacttggaaaa |
29447651 |
T |
|
| Q |
308 |
tctgatgtgaatttcctataatcattcgacaaactggatactgattcttcgtgcattttccgatagtgcttcccatctatgaagcacagacactccttcc |
407 |
Q |
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||||| ||||||||| |||||||||||||||||| |||| |||||||||| |||||||||| ||||| ||| ||||||||||||| |||||||| ||| |
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| T |
29447650 |
tctgaggtgaatttcttataatcattcgacaaaccggattctgattcttcatgcattttccattagtgtttctgatctatgaagcacggacactcc-tcc |
29447552 |
T |
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| Q |
408 |
gattagacgtgccctggtgtcggac |
432 |
Q |
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|||||||| || || |||||||||| |
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| T |
29447551 |
gattagacctgtcccggtgtcggac |
29447527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 432
Target Start/End: Original strand, 36450694 - 36450741
Alignment:
| Q |
384 |
ctatgaagcacagacactccttccgattagacgtgccctggtgtcggac |
432 |
Q |
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|||||||||||||||||||| || |||||| |||| ||||||||||||| |
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| T |
36450694 |
ctatgaagcacagacactcc-tcggattaggcgtgtcctggtgtcggac |
36450741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 74 - 180
Target Start/End: Complemental strand, 14584352 - 14584246
Alignment:
| Q |
74 |
atgtcatccaaaatatgaaaactgaagtcatatatatgaacataagtagacttacagattacagaaaagacggacatccttcagtataccgaaaagatta |
173 |
Q |
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||||||||| ||| ||||||||| ||| || ||||||||||||||||| | ||||||||||||||||||| ||||| ||| ||||| ||| || || |
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| T |
14584352 |
atgtcatcccaaagatgaaaactccagttatttatatgaacataagtaggatgacagattacagaaaagacgcccatccatcaatatacagaatggaata |
14584253 |
T |
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| Q |
174 |
caagaca |
180 |
Q |
| |
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||||||| |
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| T |
14584252 |
caagaca |
14584246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 285
Target Start/End: Complemental strand, 14584214 - 14584141
Alignment:
| Q |
212 |
aagattgcagccattggtgtttgcctggagtaccagatacttggaatgaattgttatatgtttctctcttaaaa |
285 |
Q |
| |
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||||||| ||||||||||| || || |||||||||||||| ||||| ||||| | |||| ||||||||||||| |
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| T |
14584214 |
aagattgtagccattggtgcttaccaggagtaccagatacctggaacgaattactctatgcttctctcttaaaa |
14584141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 15113355 - 15113399
Alignment:
| Q |
214 |
gattgcagccattggtgtttgcctggagtaccagatacttggaat |
258 |
Q |
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| T |
15113355 |
gattgcagccattggtgtctgcctggtgttcctgatacttggaat |
15113399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 25962717 - 25962770
Alignment:
| Q |
213 |
agattgcagccattggtgtttgcctggagtaccagatacttggaatgaattgtt |
266 |
Q |
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||||||||| ||||||||| | ||||| |||| |||||||||||||||||||| |
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| T |
25962717 |
agattgcagtcattggtgtcttcctggtttacctgatacttggaatgaattgtt |
25962770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 432
Target Start/End: Complemental strand, 1433578 - 1433531
Alignment:
| Q |
384 |
ctatgaagcacagacactccttccgattagacgtgccctggtgtcggac |
432 |
Q |
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||||||||||| ||||||||| | ||||||||||| ||||||||||||| |
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| T |
1433578 |
ctatgaagcacggacactcct-cggattagacgtgtcctggtgtcggac |
1433531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 432
Target Start/End: Complemental strand, 24645600 - 24645553
Alignment:
| Q |
384 |
ctatgaagcacagacactccttccgattagacgtgccctggtgtcggac |
432 |
Q |
| |
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|||||||||||||||||| |||| ||||||||||| | ||||||||||| |
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| T |
24645600 |
ctatgaagcacagacact-cttcggattagacgtgtcttggtgtcggac |
24645553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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