View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0144-INSERTION-5 (Length: 534)
Name: NF0144-INSERTION-5
Description: NF0144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0144-INSERTION-5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 6 - 404
Target Start/End: Complemental strand, 18013367 - 18012967
Alignment:
| Q |
6 |
catttaattcatcatttctactaacatatcataaatgaatcagacaggtatgaaacttttttctcaaa-gtttatagccttatcatatcttcgctacatt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
18013367 |
catttaattcatcatttctactaacatatcataaatgaatcagacagctatgaaacttttttctcaaaagtttatagccttatcatatcttcgctacatt |
18013268 |
T |
|
| Q |
105 |
actaaaggatgtttttctgaagataggaa-ttggtattatttgaaaattgacgaaaccatgtataaagaatgctaatggatattgataatgataaaatac |
203 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18013267 |
actaaaggatgtttttctgaagataggaaattggtattatttgaaaattgacgaaaccatgtataaagaatgctaatggatattgataatgataaaatac |
18013168 |
T |
|
| Q |
204 |
tagtatatttctttgtggagaatcttcatttttcaatatttctcaaatacattttctatttaaagtgttaatgttattgctcggtttgtttcgatgtaag |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
18013167 |
tagtatatttctttgtggagaatcttcattttcaaatatttctcaaatacattttctatttaaagtgttaatgttattgcttggtttgtttcaatgtaag |
18013068 |
T |
|
| Q |
304 |
acttgaagttatggtagataagatctatagactaagtagaactttctttgtcatttcttctttacgtttcatatgtttgttgctcaatttttcaaggaag |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18013067 |
acttgaagttatggtagataagatctatagactaagtagaactttctttgtcattttttctttacgtttcatatgtttgttgctcaatttttcaaggaag |
18012968 |
T |
|
| Q |
404 |
c |
404 |
Q |
| |
|
| |
|
|
| T |
18012967 |
c |
18012967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1481 times since January 2019
Visitors: 1423