View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0147_high_2 (Length: 376)

Name: NF0147_high_2
Description: NF0147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0147_high_2
NF0147_high_2
[»] chr7 (11 HSPs)
chr7 (1-193)||(48167897-48168089)
chr7 (184-348)||(48161893-48162056)
chr7 (189-346)||(34390018-34390175)
chr7 (189-294)||(35745747-35745852)
chr7 (189-262)||(6584965-6585037)
chr7 (228-345)||(8745245-8745363)
chr7 (184-262)||(3867167-3867244)
chr7 (189-263)||(41089700-41089773)
chr7 (189-248)||(3419623-3419681)
chr7 (184-340)||(33435160-33435317)
chr7 (312-343)||(6585061-6585092)
[»] chr3 (9 HSPs)
chr3 (190-346)||(23328218-23328374)
chr3 (201-348)||(21342603-21342750)
chr3 (189-346)||(40023440-40023597)
chr3 (201-348)||(45398864-45399011)
chr3 (184-303)||(43012426-43012545)
chr3 (184-263)||(19176553-19176631)
chr3 (184-259)||(9584009-9584083)
chr3 (228-303)||(25647778-25647853)
chr3 (228-345)||(14879528-14879646)
[»] chr2 (8 HSPs)
chr2 (201-346)||(14106390-14106536)
chr2 (189-346)||(14405254-14405411)
chr2 (189-346)||(7874347-7874504)
chr2 (189-303)||(5254312-5254425)
chr2 (189-340)||(387229-387382)
chr2 (312-346)||(7460855-7460889)
chr2 (190-303)||(10173491-10173602)
chr2 (184-256)||(39338825-39338895)
[»] chr4 (5 HSPs)
chr4 (189-346)||(35341207-35341363)
chr4 (201-346)||(31050529-31050675)
chr4 (189-346)||(2825839-2825996)
chr4 (184-256)||(8255078-8255148)
chr4 (184-256)||(8268496-8268566)
[»] chr1 (7 HSPs)
chr1 (189-346)||(27031708-27031865)
chr1 (201-346)||(7857721-7857866)
chr1 (189-345)||(24658985-24659140)
chr1 (190-345)||(46814336-46814491)
chr1 (184-309)||(24684383-24684508)
chr1 (228-303)||(31290933-31291008)
chr1 (189-256)||(46692779-46692844)
[»] chr8 (4 HSPs)
chr8 (201-346)||(15821247-15821392)
chr8 (201-346)||(38577657-38577803)
chr8 (220-303)||(35816155-35816238)
chr8 (204-309)||(36630908-36631013)
[»] chr5 (3 HSPs)
chr5 (196-340)||(29087544-29087688)
chr5 (184-263)||(7162269-7162347)
chr5 (228-304)||(8297560-8297636)
[»] chr6 (1 HSPs)
chr6 (228-308)||(20701712-20701792)
[»] scaffold0050 (1 HSPs)
scaffold0050 (228-303)||(36801-36876)
[»] scaffold0343 (1 HSPs)
scaffold0343 (184-249)||(5756-5820)


Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 48167897 - 48168089
Alignment:
Q  1 catttacatgacattaaattacactagattatatagtatataattcaactcaattatgtatgcaactttactttttgtaggcaagagatgtgagtatggg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48167897 catttacatgacattaaattacactagattatatagtatataattcaactcaattatgtatgcaactttactttttgtaggcaagagatgtgagtatggg 48167996  T
Q  101 aaagcgtccattgtcggattttgtagactcgcgactaaagggacaagttgataaggaggattttggatctattttacagattgcagtactttg 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48167997 aaagcgtccattgtcggattttgtagactcgcgactaaagggacaagttgataaggaggattttggatctattttacagattgcagtactttg 48168089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 184 - 348
Target Start/End: Complemental strand, 48162056 - 48161893
Alignment:
Q  184 cagtactttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttag 283  Q
    |||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  48162056 cagttctttggctcaaattgatttttggacttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattgggtta- 48161958  T
Q  284 gagcttttcgaatgtggctcgacttgtcgttgaagtctgggagttttattttgaggggtgttcgt 348  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||| |||| |||||||||    
T  48161957 gagcttttcgaatgtggctcgacttggcgttgaagtctgagagttttattctgagaggtgttcgt 48161893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 189 - 346
Target Start/End: Original strand, 34390018 - 34390175
Alignment:
Q  189 ctttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagct 288  Q
    |||||||| || ||||||||||||||||| |||| ||||||||| |||||||| ||||||||||||||||||||| ||| |||||||| | |||||||||    
T  34390018 ctttggcttaagttggtttttgggcttttatttt-gtgctctttcggtggatcggaggtcgagaggttgtggaagctgcatgttcattcgattaggagct 34390116  T
Q  289 tttcgaatgtggctcgactt-gtcgttgaagtctgggagttttattttgaggggtgttc 346  Q
    |||| |||||||||| |||| |  |||| ||||||||||||||||||||||||||||||    
T  34390117 tttcaaatgtggctcaacttgggtgttgtagtctgggagttttattttgaggggtgttc 34390175  T

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Target: chr7; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 189 - 294
Target Start/End: Complemental strand, 35745852 - 35745747
Alignment:
Q  189 ctttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagct 288  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||  ||||| ||||||||||||||| ||| |||||||| |||||||||||    
T  35745852 ctttggctcaagttggtttttgggcttttgtttttgtgctctttcggtggattggaggtggagaggttgtggaagctgcatgttcattcggttaggagct 35745753  T
Q  289 tttcga 294  Q
    ||||||    
T  35745752 tttcga 35745747  T

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Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 189 - 262
Target Start/End: Original strand, 6584965 - 6585037
Alignment:
Q  189 ctttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaa 262  Q
    |||||||| || |||||||||||||||||||||| ||||||||| |||||||| ||||| ||||||||||||||    
T  6584965 ctttggcttaagttggtttttgggcttttgtttt-gtgctctttcggtggatcggaggttgagaggttgtggaa 6585037  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 345
Target Start/End: Original strand, 8745245 - 8745363
Alignment:
Q  228 tcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagcttttcgaatgtggctc-gacttgtcgttgaagtctgggag 326  Q
    ||||| |||||||| ||||||||||||||||||||| ||| || || ||  | ||||||||||||| ||||||||| |  |||  ||| ||| |||||||    
T  8745245 tctttcggtggatcggaggtcgagaggttgtggaagctgcatgatctttcagataggagcttttcggatgtggctcagctttggtgttcaagactgggag 8745344  T
Q  327 ttttattttgaggggtgtt 345  Q
    ||| |||||||||||||||    
T  8745345 tttaattttgaggggtgtt 8745363  T

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Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 184 - 262
Target Start/End: Original strand, 3867167 - 3867244
Alignment:
Q  184 cagtactttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaa 262  Q
    |||| ||||| ||||| |||||||||||||||||| ||| ||||||||  |||||||||||||||| |||||| |||||    
T  3867167 cagttctttgactcaagttggtttttgggcttttgcttt-gtgctcttgcggtggatcagaggtcgcgaggttatggaa 3867244  T

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Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 41089773 - 41089700
Alignment:
Q  189 ctttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaag 263  Q
    ||||| ||||| |||||||||| ||||||||||| ||| ||||| |||||||| ||||||| |||||||||||||    
T  41089773 ctttgactcaagttggtttttgagcttttgtttt-gtgatctttcggtggatcggaggtcgcgaggttgtggaag 41089700  T

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Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 3419681 - 3419623
Alignment:
Q  189 ctttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtc 248  Q
    ||||| ||||| |||||||||||||||| |||| |||||||||| |||||||||||||||    
T  3419681 ctttgactcaagttggtttttgggcttt-gtttctgtgctctttcggtggatcagaggtc 3419623  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 340
Target Start/End: Original strand, 33435160 - 33435317
Alignment:
Q  184 cagtactttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttag 283  Q
    |||| ||||| ||||| || |||| ||||| |||||||| ||||||||| |||||||| ||||||| ||||||||| ||| | | || || || ||| ||    
T  33435160 cagttctttgtctcaagttcgtttgtgggcatttgtttt-gtgctctttcggtggatcggaggtcgcgaggttgtgaaagctacatgatccttcggtcag 33435258  T
Q  284 gagcttttcgaa-tgtggctcgactt-gtcgttgaagtctgggagttttattttgaggg 340  Q
    | ||| |||||| ||||||||  ||| || ||||| ||||| ||||||| |||||||||    
T  33435259 gtgctcttcgaattgtggctcagcttggttgttgaggtctgagagttttcttttgaggg 33435317  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 343
Target Start/End: Original strand, 6585061 - 6585092
Alignment:
Q  312 gttgaagtctgggagttttattttgaggggtg 343  Q
    ||||||||||||||||||||||||||||||||    
T  6585061 gttgaagtctgggagttttattttgaggggtg 6585092  T

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Target: chr3 (Bit Score: 94; Significance: 8e-46; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 190 - 346
Target Start/End: Complemental strand, 23328374 - 23328218
Alignment:
Q  190 tttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagctt 289  Q
    |||||||||| |||||||||| ||||||||||| ||||||||| |||||||| ||||||||||||||||||||| | |||||||||| ||||||||||||    
T  23328374 tttggctcaagttggtttttgagcttttgtttt-gtgctctttcggtggatcggaggtcgagaggttgtggaagctccttgttcattcggttaggagctt 23328276  T
Q  290 ttcgaatgtggctcgactt-gtcgttgaagtctgggagttttattttgaggggtgttc 346  Q
    ||||||||||||||  ||| |  ||||||||||||||||||||||||||| |||||||    
T  23328275 ttcgaatgtggctcagcttgggtgttgaagtctgggagttttattttgagtggtgttc 23328218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 201 - 348
Target Start/End: Original strand, 21342603 - 21342750
Alignment:
Q  201 ttggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagcttttcgaatgtgg 300  Q
    ||||||||| |||||||||||| ||||||||| | |||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||    
T  21342603 ttggtttttaggcttttgtttt-gtgctctttcgatggatcagaggtcgagaggttgtggaagctgcttgttcattcggttagaagcttttcgaatgtgg 21342701  T
Q  301 ctcgactt-gtcgttgaagtctgggagttttattttgaggggtgttcgt 348  Q
    |||||||| |  ||||||||||| ||||||||||   ||||||||||||    
T  21342702 ctcgacttgggtgttgaagtctgagagttttattccaaggggtgttcgt 21342750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 189 - 346
Target Start/End: Complemental strand, 40023597 - 40023440
Alignment:
Q  189 ctttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagct 288  Q
    |||||||| || |||||||||||||||||||||| ||||||||| ||||||||||||| || ||||||||||||| ||| |||||||| |||||||||||    
T  40023597 ctttggcttaagttggtttttgggcttttgtttt-gtgctctttcggtggatcagaggacgggaggttgtggaagctgcatgttcattcggttaggagct 40023499  T
Q  289 tttcgaatgtggctcgact-tgtcgttgaagtctgggagttttattttgaggggtgttc 346  Q
    |||||||||||||||  ||  |  |||| ||||||||||||||||||||||||| ||||    
T  40023498 tttcgaatgtggctcagctagggtgttgtagtctgggagttttattttgaggggcgttc 40023440  T

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Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 201 - 348
Target Start/End: Original strand, 45398864 - 45399011
Alignment:
Q  201 ttggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagcttttcgaatgtgg 300  Q
    ||||||||||||||||||||||  |||||||| | |||||| ||||||||||||||||||||| ||| |||||||| ||||| |||||||||||||||||    
T  45398864 ttggtttttgggcttttgtttta-tgctctttcgatggatcggaggtcgagaggttgtggaagctgcatgttcattcggttatgagcttttcgaatgtgg 45398962  T
Q  301 ctcgactt-gtcgttgaagtctgggagttttattttgaggggtgttcgt 348  Q
    | | |||| |  |||||||| |||||||| ||||||| |||||||||||    
T  45398963 cgcaacttaggtgttgaagtttgggagttctattttgtggggtgttcgt 45399011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 184 - 303
Target Start/End: Original strand, 43012426 - 43012545
Alignment:
Q  184 cagtactttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttag 283  Q
    |||| ||||| ||||| |||||||||| ||||||||||| ||||||||| |||| ||||||||||| ||||||||||||||||| || || || ||| ||    
T  43012426 cagttctttgactcaagttggtttttgagcttttgtttt-gtgctctttcggtgaatcagaggtcgcgaggttgtggaagttgcatgatcgttcggtcag 43012524  T
Q  284 gagcttttcg-aatgtggctc 303  Q
    | ||| |||| ||||||||||    
T  43012525 gtgctcttcgaaatgtggctc 43012545  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 184 - 263
Target Start/End: Original strand, 19176553 - 19176631
Alignment:
Q  184 cagtactttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaag 263  Q
    |||| ||||| ||||| |||||||||||||||||| ||| |||||||||||||||||| |||||||  ||||||||||||    
T  19176553 cagttctttgactcaagttggtttttgggcttttgattt-gtgctcttttggtggatcggaggtcgcaaggttgtggaag 19176631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 259
Target Start/End: Complemental strand, 9584083 - 9584009
Alignment:
Q  184 cagtactttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtg 259  Q
    |||| ||||| |||||  ||||||||||||||||| ||||||| ||||| |||||||| ||||| | |||||||||    
T  9584083 cagttctttgtctcaagatggtttttgggcttttg-ttttgtgatctttcggtggatcggaggttgcgaggttgtg 9584009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 303
Target Start/End: Original strand, 25647778 - 25647853
Alignment:
Q  228 tcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagcttttcgaatgtggctc 303  Q
    |||||||||||||| ||||||||||||| ||| ||||||  || || || ||||| |||||||||| | |||||||    
T  25647778 tcttttggtggatcggaggtcgagaggtggtgaaagttgaatgatctttcggttatgagcttttcggacgtggctc 25647853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 345
Target Start/End: Original strand, 14879528 - 14879646
Alignment:
Q  228 tcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagcttttcgaatgtggctcgactt-gtcgttgaagtctgggag 326  Q
    ||||| |||||||  ||||||||||||| ||||||| |   || || ||  | ||||||||||||| ||||||||||  || |  ||| |||||||||||    
T  14879528 tctttcggtggataggaggtcgagaggtggtggaagcttaatgatctttcagataggagcttttcggatgtggctcgggtttggtgttcaagtctgggag 14879627  T
Q  327 ttttattttgaggggtgtt 345  Q
    ||| |||||||||||||||    
T  14879628 tttaattttgaggggtgtt 14879646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 201 - 346
Target Start/End: Complemental strand, 14106536 - 14106390
Alignment:
Q  201 ttggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagcttttcgaatgtgg 300  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||  || ||||| ||||| ||||||| |||||||||    
T  14106536 ttggtttttgggtttttgtttttgtgctctttcggtggatcagaggtcgagaggttgtggaagttgtatgatcattcggttaagagctttacgaatgtgg 14106437  T
Q  301 ctcgactt-gtcgttgaagtctgggagttttattttgaggggtgttc 346  Q
    |||  ||| |  ||||||||||| |||||||||||||||||||||||    
T  14106436 ctcagcttgggtgttgaagtctgagagttttattttgaggggtgttc 14106390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 189 - 346
Target Start/End: Original strand, 14405254 - 14405411
Alignment:
Q  189 ctttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagct 288  Q
    ||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||| |||||| ||||||||||  |||  ||||||| |||||||||||    
T  14405254 ctttggctcaagttggtttttgggcttttgtttt-gtgctctttcggtggatcagaagtcgagtggttgtggaaactgcacgttcatttggttaggagct 14405352  T
Q  289 tttcgaatgtggctcgactt-gtcgttgaagtctgggagttttattttgaggggtgttc 346  Q
    | ||| |||||||||||||| |  ||||||||||||||||||||||||||||| |||||    
T  14405353 tgtcgcatgtggctcgacttgggtgttgaagtctgggagttttattttgagggatgttc 14405411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 189 - 346
Target Start/End: Original strand, 7874347 - 7874504
Alignment:
Q  189 ctttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagct 288  Q
    ||||| ||||| |||||||||||||||||||||| |||||| || |||||||| ||||||||||||||||||||  | |||||||||| |||||||||||    
T  7874347 ctttgactcaagttggtttttgggcttttgtttt-gtgctcattcggtggatcggaggtcgagaggttgtggaaactacttgttcatttggttaggagct 7874445  T
Q  289 tttcgaatgtggctcgactt-gtcgttgaagtctgggagttttattttgaggggtgttc 346  Q
    |||||||||||||||  ||| |  |||||||||| |||||||||||||||||| |||||    
T  7874446 tttcgaatgtggctcagcttgggtgttgaagtcttggagttttattttgagggatgttc 7874504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 189 - 303
Target Start/End: Original strand, 5254312 - 5254425
Alignment:
Q  189 ctttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagct 288  Q
    |||||| |||| |||||||| ||||||||||||| ||||| ||| |||||||| ||||||||||||||||||||| ||| |||||||| |||| ||||||    
T  5254312 ctttggttcaagttggttttcgggcttttgtttt-gtgctttttcggtggatcggaggtcgagaggttgtggaagctgcatgttcattcggtttggagct 5254410  T
Q  289 tttcgaatgtggctc 303  Q
    |||||||||||||||    
T  5254411 tttcgaatgtggctc 5254425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 189 - 340
Target Start/End: Original strand, 387229 - 387382
Alignment:
Q  189 ctttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagct 288  Q
    ||||| ||||| |||||||||| |||||||||||||||||||||||||||||| ||||||  |||||| |||||| ||| ||||||||  || ||| |||    
T  387229 ctttgactcaagttggtttttgagcttttgtttttgtgctcttttggtggatcggaggtcacgaggttttggaagctgcatgttcattcagtcaggtgct 387328  T
Q  289 tttcga-atgtggctcgactt-gtcgttgaagtctgggagttttattttgaggg 340  Q
     ||||| | |||||||  ||| |  ||||  |||||||||||||||||||||||    
T  387329 cttcgataggtggctcagcttgggtgttggggtctgggagttttattttgaggg 387382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 346
Target Start/End: Original strand, 7460855 - 7460889
Alignment:
Q  312 gttgaagtctgggagttttattttgaggggtgttc 346  Q
    |||||||||||||||||||||||||||||||||||    
T  7460855 gttgaagtctgggagttttattttgaggggtgttc 7460889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 303
Target Start/End: Complemental strand, 10173602 - 10173491
Alignment:
Q  190 tttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagctt 289  Q
    |||||||||| || | |||||||||||||||  |||  ||||| |||| ||| ||||||||||||| ||||||||||  || || || |  || ||||||    
T  10173602 tttggctcaagtttggttttgggcttttgttggtgt--tctttcggtgaatcggaggtcgagaggtggtggaagttgaatgatcttttgaatatgagctt 10173505  T
Q  290 ttcgaatgtggctc 303  Q
    |||| |||||||||    
T  10173504 ttcggatgtggctc 10173491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 256
Target Start/End: Complemental strand, 39338895 - 39338825
Alignment:
Q  184 cagtactttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggtt 256  Q
    |||| ||||| ||||| ||||||||||||||||   | ||||||||||| |||||||| ||||||| ||||||    
T  39338895 cagttctttgactcaagttggtttttgggctttg--tgttgtgctctttcggtggatcggaggtcgcgaggtt 39338825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 189 - 346
Target Start/End: Complemental strand, 35341363 - 35341207
Alignment:
Q  189 ctttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagct 288  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||| |||||||| ||| ||||||||||||||||| ||| ||||||||  |||| |||||    
T  35341363 ctttggctcaagttggtttttggccttttgtttt-gtgctctttcggtggatcggagttcgagaggttgtggaagctgcatgttcattcagttatgagct 35341265  T
Q  289 tttcgaatgtggctcgacttgtcgttgaagtctgggagttttattttgaggggtgttc 346  Q
    |||||||||||||||   |||  |||||||| ||||||||||||||||||||||||||    
T  35341264 tttcgaatgtggctcagtttggtgttgaagtttgggagttttattttgaggggtgttc 35341207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 201 - 346
Target Start/End: Complemental strand, 31050675 - 31050529
Alignment:
Q  201 ttggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagcttttcgaatgtgg 300  Q
    ||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||| ||| |||||||| ||||||||||||||||| |||||    
T  31050675 ttggtttttgggcttttgtttttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttaggagcttttcgattgtgg 31050576  T
Q  301 ctcgactt-gtcgttgaagtctgggagttttattttgaggggtgttc 346  Q
    ||   ||| |  ||||||||||||  |||||||||||||||||||||    
T  31050575 ctaagcttgggtgttgaagtctggctgttttattttgaggggtgttc 31050529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 189 - 346
Target Start/End: Original strand, 2825839 - 2825996
Alignment:
Q  189 ctttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagct 288  Q
    |||||||||||  |||||||||||||||| |||| || |||||| |||||||| |||||| |||||||||||||| ||| |||||||| |||||||||||    
T  2825839 ctttggctcaatgtggtttttgggcttttatttt-gtactctttcggtggatcggaggtctagaggttgtggaagctgcatgttcattcggttaggagct 2825937  T
Q  289 tttcgaatgtggctc-gacttgtcgttgaagtctgggagttttattttgaggggtgttc 346  Q
    ||||||| |||| || |  | |  |||||||| ||||||||||||||||||||||||||    
T  2825938 tttcgaaggtggttcagtttgggtgttgaagtttgggagttttattttgaggggtgttc 2825996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 256
Target Start/End: Original strand, 8255078 - 8255148
Alignment:
Q  184 cagtactttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggtt 256  Q
    |||| ||||| ||||| ||||||||||||||||   ||||||||||||| |||||||| ||||||| ||||||    
T  8255078 cagttctttgactcaagttggtttttgggctttg--ttttgtgctctttcggtggatcggaggtcgcgaggtt 8255148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 256
Target Start/End: Original strand, 8268496 - 8268566
Alignment:
Q  184 cagtactttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggtt 256  Q
    |||| ||||| ||||| ||||||||||||||||   ||||||||||||| |||||||| ||||||| ||||||    
T  8268496 cagttctttgactcaagttggtttttgggctttg--ttttgtgctctttcggtggatcggaggtcgcgaggtt 8268566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 189 - 346
Target Start/End: Complemental strand, 27031865 - 27031708
Alignment:
Q  189 ctttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagct 288  Q
    ||||||||||| |||||||| ||| ||||||||| ||||||||| |||||||| ||||| ||||||||||||||| ||| |||||||| ||||| |||||    
T  27031865 ctttggctcaagttggttttagggattttgtttt-gtgctctttcggtggatcggaggttgagaggttgtggaagctgcatgttcattcggttaagagct 27031767  T
Q  289 tttcgaatgtggctc-gacttgtcgttgaagtctgggagttttattttgaggggtgttc 346  Q
    ||||||||||||||| |  | |  |||||||||||||||||||||||||||||||||||    
T  27031766 tttcgaatgtggctcagtttggatgttgaagtctgggagttttattttgaggggtgttc 27031708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 201 - 346
Target Start/End: Original strand, 7857721 - 7857866
Alignment:
Q  201 ttggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagcttttcgaatgtgg 300  Q
    ||||||||||| |||||||||| ||||||||| |||||||| | ||||||||||||||||||| ||||||| |||| ||||||||||||||  |||||||    
T  7857721 ttggtttttggccttttgtttt-gtgctctttcggtggatcggtggtcgagaggttgtggaagctgcttgtccattcggttaggagcttttgaaatgtgg 7857819  T
Q  301 ctc-gacttgtcgttgaagtctgggagttttattttgaggggtgttc 346  Q
    ||| |  | |  |||||||||||||||||||||||||||||||||||    
T  7857820 ctcagtttgggtgttgaagtctgggagttttattttgaggggtgttc 7857866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 189 - 345
Target Start/End: Original strand, 24658985 - 24659140
Alignment:
Q  189 ctttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagct 288  Q
    |||||||| || |||||||||||||||| ||||| ||||||||| |||||||| |||||||||||||||||||||   | |||||||| |||||| ||||    
T  24658985 ctttggctgaagttggtttttgggctttggtttt-gtgctctttcggtggatcggaggtcgagaggttgtggaagcatcatgttcattcggttagaagct 24659083  T
Q  289 tttcgaatgtggctc-gacttgtcgttgaagtctgggagttttattttgaggggtgtt 345  Q
    ||||||||||||||| | || |  ||| ||||||||||||||||||||||||||||||    
T  24659084 tttcgaatgtggctcagcctgggagtt-aagtctgggagttttattttgaggggtgtt 24659140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 190 - 345
Target Start/End: Complemental strand, 46814491 - 46814336
Alignment:
Q  190 tttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagctt 289  Q
    |||||||||| ||||||||| |||||||||||| ||||||||| |||||||| || ||||||||||||  |||| |||  ||||||| | ||||||||||    
T  46814491 tttggctcaagttggttttttggcttttgtttt-gtgctctttcggtggatcggatgtcgagaggttgcagaagctgcaagttcattcgattaggagctt 46814393  T
Q  290 ttcgaatgtggctcgac-ttgtcgttgaagtctgggagttttattttgaggggtgtt 345  Q
    ||||||||||||||| | | |  |||||||| |||||||||||||| ||||||||||    
T  46814392 ttcgaatgtggctcggcgtgggtgttgaagtatgggagttttatttcgaggggtgtt 46814336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 184 - 309
Target Start/End: Complemental strand, 24684508 - 24684383
Alignment:
Q  184 cagtactttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttag 283  Q
    |||| ||||| ||| | |||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||||||||| ||| || || || ||| ||    
T  24684508 cagttctttgactctagttggtttttgggcttttgtttt-gtgctctttcggtggatcggaggtcgcgaggttgtggaagatgcatgatccttcggtcag 24684410  T
Q  284 gagcttttcg-aatgtggctcgacttg 309  Q
    | ||| |||| |||||||||| |||||    
T  24684409 gtgctcttcgaaatgtggctcaacttg 24684383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 303
Target Start/End: Complemental strand, 31291008 - 31290933
Alignment:
Q  228 tcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagcttttcgaatgtggctc 303  Q
    ||||| |||||||| ||||||||||||| |||||||||||||| || || || ||||||||||||| |||||||||    
T  31291008 tctttcggtggatcggaggtcgagaggtggtggaagttgcttgatctttcggataggagcttttcggatgtggctc 31290933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 46692844 - 46692779
Alignment:
Q  189 ctttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggtt 256  Q
    ||||||||||| ||||||||||||||||   | ||||||||||| ||||| || ||||||| ||||||    
T  46692844 ctttggctcaagttggtttttgggcttt--gtgttgtgctctttcggtggttcggaggtcgcgaggtt 46692779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 8e-37; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 201 - 346
Target Start/End: Complemental strand, 15821392 - 15821247
Alignment:
Q  201 ttggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagcttttcgaatgtgg 300  Q
    |||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||    |||||||||| |||||||||||||||||||||||    
T  15821392 ttggtttttgggcttttgtttt-gtgctctttcagtggatcagaggtcgagaggttgtggaaacaacttgttcatttggttaggagcttttcgaatgtgg 15821294  T
Q  301 ctcgact-tgtcgttgaagtctgggagttttattttgaggggtgttc 346  Q
    |||  ||  |  |||||||||||||||||||||||||||| ||||||    
T  15821293 ctcagctcggatgttgaagtctgggagttttattttgaggagtgttc 15821247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 201 - 346
Target Start/End: Complemental strand, 38577803 - 38577657
Alignment:
Q  201 ttggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagcttttcgaatgtgg 300  Q
    ||||||||||| |||||||||| ||||||||| |||||||||||||||||||| ||||||||| ||| |||||||| |||| |||||||||||||| |||    
T  38577803 ttggtttttggacttttgtttt-gtgctctttcggtggatcagaggtcgagagtttgtggaagctgcatgttcattcggtttggagcttttcgaatatgg 38577705  T
Q  301 ctcgactt-gtcgttgaagtct-gggagttttattttgaggggtgttc 346  Q
    | | |||| |  |||||||||| ||||||||||||||| || ||||||    
T  38577704 cgcaacttgggtgttgaagtctggggagttttattttgtggagtgttc 38577657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 220 - 303
Target Start/End: Complemental strand, 35816238 - 35816155
Alignment:
Q  220 ttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagcttttcgaatgtggctc 303  Q
    |||||||||||||||||||||| ||||| ||||| ||||||||| ||| |||||||| ||||| ||| ||||||||||||||||    
T  35816238 ttttgtgctcttttggtggatcggaggttgagagattgtggaagctgcatgttcattcggttaagagtttttcgaatgtggctc 35816155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 309
Target Start/End: Original strand, 36630908 - 36631013
Alignment:
Q  204 gtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagcttttcg-aatgtggct 302  Q
    ||||||||||||||||||| ||||||||| | |||||| ||||||| |||||||||| || ||| || || || ||| ||| ||| |||| |||||||||    
T  36630908 gtttttgggcttttgtttt-gtgctctttcgatggatcggaggtcgcgaggttgtgggagctgcatgatccttcggtcaggtgctcttcgaaatgtggct 36631006  T
Q  303 cgacttg 309  Q
    | |||||    
T  36631007 caacttg 36631013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 196 - 340
Target Start/End: Original strand, 29087544 - 29087688
Alignment:
Q  196 tcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagcttttcgaa 295  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||| ||||||| |||||| ||| || | | || || || ||| ||| ||| |||| |    
T  29087544 tcaaattggtttctgggcttttgtttt-gtgctctttcggtggatcggaggtcgcgaggttatggtagctccatgatcctttggtcaggtgctcttcgta 29087642  T
Q  296 tgtggctcgactt-gtcgttgaagtctgggagttttattttgaggg 340  Q
    |||||||| |||| |  ||||  ||||||||| |||||||||||||    
T  29087643 tgtggctcaacttagatgttggggtctgggagctttattttgaggg 29087688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 263
Target Start/End: Complemental strand, 7162347 - 7162269
Alignment:
Q  184 cagtactttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaag 263  Q
    |||| ||||| ||||| |||||||||||| ||||||||| ||||||||| | |||||| ||||||| |||||| ||||||    
T  7162347 cagttctttgactcaagttggtttttgggtttttgtttt-gtgctctttcgatggatcggaggtcgcgaggttatggaag 7162269  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 8297560 - 8297636
Alignment:
Q  228 tcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagcttttcgaatgtggctcg 304  Q
    ||||| |||| ||| ||||||| ||||| ||||||||||  || || || || ||||||||||||| ||||||||||    
T  8297560 tctttcggtgaatcggaggtcgtgaggtggtggaagttgaatggtctttcggataggagcttttcggatgtggctcg 8297636  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 20701792 - 20701712
Alignment:
Q  228 tcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagcttttcgaatgtggctcgactt 308  Q
    ||||| |||||||| ||||||||||||| ||||||| ||  || || || || ||||||||||||||||||||||| ||||    
T  20701792 tctttcggtggatcggaggtcgagaggtagtggaagctgaatgatctttcggataggagcttttcgaatgtggctcaactt 20701712  T

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Target: scaffold0050 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 303
Target Start/End: Original strand, 36801 - 36876
Alignment:
Q  228 tcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagcttttcgaatgtggctc 303  Q
    ||||| |||||||| |||||||||| || ||||||||||  || || || ||||||||||||||||| ||||||||    
T  36801 tctttcggtggatcggaggtcgagatgtggtggaagttgaatggtctttcggttaggagcttttcgattgtggctc 36876  T

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Target: scaffold0343 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 5756 - 5820
Alignment:
Q  184 cagtactttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcg 249  Q
    |||| ||||| ||||  |||||||||||||||| ||||||||||||||| ||| |||| |||||||    
T  5756 cagttctttgactcaggttggtttttgggcttt-gtttttgtgctctttcggtagatcggaggtcg 5820  T

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