View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0147_low_1 (Length: 767)
Name: NF0147_low_1
Description: NF0147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0147_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 324 - 674
Target Start/End: Original strand, 4761834 - 4762185
Alignment:
| Q |
324 |
aattctgcataatttgatattttatgcttattttaaggttgatttcctttatttcatatatagttttctttgtagtggatcgtcatgagctttctatctg |
423 |
Q |
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| T |
4761834 |
aattctgcataatttgatcttttatgcttattttaaggttgatttcctttatttcatatatagttttctttgtagtggatcgtcatgagctttctatctg |
4761933 |
T |
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| Q |
424 |
tttgtttgttttatacattttctcacatgtataataaatctgatgtatttgcgcgcagaggataaccaattatttcttttttcctgttaggttttgtgtt |
523 |
Q |
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| T |
4761934 |
tttgtttgttttatacattttctcacatgtataataaatctgatgtatttgcgcgcaaaggataaccgattatttcttttttcctgttaggttttgtgtt |
4762033 |
T |
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| Q |
524 |
atttgatctaaagtggttttgcatatatgtaattttaatggtttctaatttttggaagtgatggaa-ttttctgatgaatttgtgggatttgttttgttt |
622 |
Q |
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| T |
4762034 |
atttgatctaaagtggttttgcataaatgtaattttaatggtttctaatttttggaagtgatggaatttttctgatgaatttgtgggatttgttttgttt |
4762133 |
T |
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| Q |
623 |
ataggtatgaaccagaaattggctctatgttttcttcatggaaatgatgatg |
674 |
Q |
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| T |
4762134 |
ataggtatgaaccagaaattggctctatgttttcttcatggaaatgatgatg |
4762185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 4761513 - 4761761
Alignment:
| Q |
1 |
tttatacccaattgttctatgaaaaggacatattcatacacgcaattgaaatcgttaccacaagacaagacaacatcattcataacacaatggttctttt |
100 |
Q |
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| T |
4761513 |
tttatacccaattgttcaatgaaaaggacat--tcatacacgcaattgaaatcgttaccacaagacaagacaacatcattcataacacaatggttctttt |
4761610 |
T |
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| Q |
101 |
cagtcctattaaaattaaattgaggtacaagaaacatttgatcatggccctataaatgtaaagtttcattttattattatttttctatcttcaacatcat |
200 |
Q |
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| T |
4761611 |
cagtcctattaaaattaaattgaggtacaagaaacatttgatcatggccctataaatgtaaagtttcattttattattatttttctatcttcaacatcat |
4761710 |
T |
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| Q |
201 |
gaaatagagaggtttcttaatttactcaagtttttctgcacatgttacgtg |
251 |
Q |
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| T |
4761711 |
gaaatagagaggtttcttaatttactcatgtttttctgcacatgttacgtg |
4761761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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