View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0148_low_1 (Length: 352)
Name: NF0148_low_1
Description: NF0148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0148_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 4765218 - 4765536
Alignment:
| Q |
1 |
ataatttgttgttcagttattggttagcaatgacgtttaactgtaaatcacagtttcgcattagacatacatcgatgttgtgtatcaactattaagtacc |
100 |
Q |
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| T |
4765218 |
ataatttgttgttcagttattggttagcaatgacgtttaactgtaaatcacagtttcgcattagacatacatcgatgttgtgtatcaactattaagtacc |
4765317 |
T |
|
| Q |
101 |
tcatttataaatctaaccatataaataatgttttacaaacagtgtgaatccataatatgctatagcaaaaagtgagttatggaatgtcagaaaaaatatt |
200 |
Q |
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| T |
4765318 |
tcatttataaatctaaccacataaataatgttttacaaacagtgtgaatccataatatggtatagcaaaaagtgagttatggaatgtcagaaaaaatatt |
4765417 |
T |
|
| Q |
201 |
cttaatgaagagaaacaacattttaggtagggaatatacatctaacacatgacaacctttgagttgtcagggttgttattgaggtacatatgacaccatt |
300 |
Q |
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| T |
4765418 |
cttaatgaagagaaaaaacattttaggtagggaatatacatctaacacatgacaacctttgagttgtcagggttgttattgaggtacatatgacaccatt |
4765517 |
T |
|
| Q |
301 |
tatgcttctggtttatttc |
319 |
Q |
| |
|
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| T |
4765518 |
tatgcttctggtttatttc |
4765536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 8935349 - 8935413
Alignment:
| Q |
26 |
agcaatgacgtttaactgtaaatcacagtttcgcattagacatacatcgatgttgtgtatcaact |
90 |
Q |
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| T |
8935349 |
agcaatgacatttaacagtaaatcgtagtttcacattaggcatatatcaatgtcgtgtatcaact |
8935413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 30050844 - 30050772
Alignment:
| Q |
44 |
taaatcacagtttcgcattagacatacatcgatgttgtgtatcaactattaagtacctcatttataaatctaa |
116 |
Q |
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| T |
30050844 |
taaatcacaatatagcattaggcatacatcaatgttgtgtatcgactgttaagtacatctttcataaagctaa |
30050772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 4974335 - 4974284
Alignment:
| Q |
58 |
gcattagacatacatcgatgttgtgtatcaactattaagtacctcatttata |
109 |
Q |
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| T |
4974335 |
gcattagacatacattaatgttatgtatcaactattaagtatctcttttata |
4974284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 4992243 - 4992192
Alignment:
| Q |
58 |
gcattagacatacatcgatgttgtgtatcaactattaagtacctcatttata |
109 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||| ||| |||||| |
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|
| T |
4992243 |
gcattagacatacattaatgttatgtatcaactattaagtatctcttttata |
4992192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 28843302 - 28843260
Alignment:
| Q |
79 |
tgtgtatcaactattaagtacctcatttataaatctaaccata |
121 |
Q |
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| T |
28843302 |
tgtgtatcaactgttaagtacctcttttataaatctaaacata |
28843260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 253
Target Start/End: Complemental strand, 35780851 - 35780768
Alignment:
| Q |
168 |
aaaagtgagttatggaatgtcagaaaaaat-attcttaatgaagagaaacaacattttaggtagggaatatacatctaacacatgac |
253 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||| || ||||| |||| |||| |||| |||||||||||| |||||||||||||||| |
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| T |
35780851 |
aaaattgagtaatggaatgtcaaaaaaaattatacttaa---agagcaacacaatttaaggtagggaatacacatctaacacatgac |
35780768 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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