View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0150-INSERTION-11 (Length: 405)
Name: NF0150-INSERTION-11
Description: NF0150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0150-INSERTION-11 |
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| [»] chr1 (2 HSPs) |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 7e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 206 - 405
Target Start/End: Original strand, 22918385 - 22918585
Alignment:
| Q |
206 |
ccttcatgctgtcatcaacttgtttgttttt-attgcgtgggctttttattttaaacttctttaggaattctataggataccatgtatgcaagcattgaa |
304 |
Q |
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| T |
22918385 |
ccttcatgttatcatcaacttgtttgttttttattgcctaggattttcattttaaacttctttaggaattctataggataccatgtatgcaagtattgaa |
22918484 |
T |
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| Q |
305 |
atgttgaaggtttaagctatatttgttcttatttaagtttctgtcttgcaggtatggactatgtggatccaaatggaaggggaatttgttggtctccatc |
404 |
Q |
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|||||||||||||||||||||||| |||| |||||||||| |||||| ||||||||| ||| | ||||| ||| ||||||| ||||| |||||||||||| |
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| T |
22918485 |
atgttgaaggtttaagctatattttttctgatttaagtttttgtctttcaggtatgggctacgaggatcaaaacggaagggaaatttattggtctccatc |
22918584 |
T |
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| Q |
405 |
t |
405 |
Q |
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| T |
22918585 |
t |
22918585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 22917920 - 22918058
Alignment:
| Q |
8 |
taaacttcaatcagatacttttgtgcatccagatttcacttagttgattattttggttgaactcttttcttgatttgtctaacccgcgcattgttgccta |
107 |
Q |
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| T |
22917920 |
taaacttcaatcaaatacttttgtgcatccaaatttcagttagttgattgttgtggttgaactcttttcttgatttgt-------------------cta |
22918000 |
T |
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| Q |
108 |
ggccattgttttgagttaaatgtattggaacttgttactttaagccacatagtgcatg |
165 |
Q |
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| T |
22918001 |
gaccattgttttgcgttaaatgtattggaacttgttactttaagccacatagtgcatg |
22918058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 206 - 405
Target Start/End: Complemental strand, 9265751 - 9265548
Alignment:
| Q |
206 |
ccttcatgctgtcatcaacttgtttgttttt-attgcgtgggctttttattttaaactt-ctttaggaattctataggata--ccatgtatgcaagcatt |
301 |
Q |
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| T |
9265751 |
ccttcatggtgtcatca-cttgtttgttttttattgtgtgggcttttcattttaaactttctttaggaattctataggatataccatgtatacaagtatt |
9265653 |
T |
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| Q |
302 |
gaaatgttgaaggtttaagctatatttgttcttatttaa-gtttctgtcttgcaggtatggactatgtggatccaaatggaaggggaatttgttggtctc |
400 |
Q |
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| T |
9265652 |
gaaatgttgaaagtttaaactatatttgctataattttatgtttctgtctttcatgtatggactatttggatccaaacggaagggaaatttactggcctc |
9265553 |
T |
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| Q |
401 |
catct |
405 |
Q |
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||||| |
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| T |
9265552 |
catct |
9265548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 59 - 187
Target Start/End: Complemental strand, 9266264 - 9266143
Alignment:
| Q |
59 |
tttggttgaactcttttcttgatttgtctaacccgcgcattgttgcctaggccattgttttgagttaaatgtattggaacttgttactttaagccacata |
158 |
Q |
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| T |
9266264 |
tttggttgaactcttttcttaatttgtctaacc-------tgttgcctaggccattgttttgagttaaatgtattggaacttgttactttaagccacata |
9266172 |
T |
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| Q |
159 |
gtgcatgaaactgtgtcgtcatcttatct |
187 |
Q |
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| T |
9266171 |
gtgcatgcagttgtgtcatcatcttatct |
9266143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 99 - 187
Target Start/End: Complemental strand, 9266130 - 9266042
Alignment:
| Q |
99 |
tgttgcctaggccattgttttgagttaaatgtattggaacttgttactttaagccacatagtgcatgaaactgtgtcgtcatcttatct |
187 |
Q |
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| T |
9266130 |
tgttgcctaggccattgttttgagttaaatgtattggaacttgttactttaagccacatagtgcgtgcagctgcgtcgtcatcttatct |
9266042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 208 - 332
Target Start/End: Complemental strand, 2550659 - 2550532
Alignment:
| Q |
208 |
ttcatgctgtcatcaacttgtttg-tttttattgcgtgggctttttattttaaacttctttaggaattctataggataccatgtatg-caagcattgaaa |
305 |
Q |
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| T |
2550659 |
ttcatggtgtcatcaacttgtttgatttttattgcgtagacttttcattttaaacttcattaggaattgtataggataccttgtatgtaaagtattgaaa |
2550560 |
T |
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| Q |
306 |
tgtt-gaaggtttaagctatatttgttc |
332 |
Q |
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| T |
2550559 |
tgttggaaggtttaatctatatgtgttc |
2550532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 208 - 326
Target Start/End: Original strand, 7710535 - 7710654
Alignment:
| Q |
208 |
ttcatgctgtcatcaacttgtttg-tttttattgcgtgggctttttattttaaacttctttaggaattctataggataccatgtatgcaagcattgaaat |
306 |
Q |
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|||||| |||||||||||||| | |||||||||||||| ||||| ||||||||||| |||||||||| ||||||||||| |||||||||| |||||||| |
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| T |
7710535 |
ttcatggtgtcatcaacttgtcagatttttattgcgtggccttttcattttaaacttttttaggaattgtataggataccttgtatgcaagtattgaaat |
7710634 |
T |
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| Q |
307 |
gttgaaggtttaagctatat |
326 |
Q |
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| T |
7710635 |
gttgaaggtttaatctatat |
7710654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 377
Target Start/End: Original strand, 12213478 - 12213546
Alignment:
| Q |
308 |
ttgaaggtttaagctatatttgttcttatttaagtttctgtcttgcaggtatggactatgtggatccaaa |
377 |
Q |
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|||||| |||||| ||| |||||||||||||| |||||| | || ||||||||| |||||||||||||| |
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| T |
12213478 |
ttgaagctttaagatatttttgttcttatttatgtttct-ttttttaggtatggattatgtggatccaaa |
12213546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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