View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0150-INSERTION-4 (Length: 279)
Name: NF0150-INSERTION-4
Description: NF0150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0150-INSERTION-4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 8 - 279
Target Start/End: Original strand, 24366233 - 24366504
Alignment:
| Q |
8 |
ggggtgtgggcataaagggttggaggcatacgaatgtaaggtcgaacccgctccatgctaacatactaacctaaccaacaattatgactttcacaattcn |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
24366233 |
ggggtgtgggcataaagggttggaggcatacgaatgtaaggtcgaacccgatccatgctaacatactaacccaaccaacaattatgactttcaccattca |
24366332 |
T |
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| Q |
108 |
nnnnnnnnnnnnnnnnnnnnnnnntagaacttagatacgagggtatgagcccaatgagtgataaacaagacacgggcatgactagattagataaataatc |
207 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24366333 |
aaaagtaaaaaataaaaataaaaatagaacttagatacgagggtatgaacccaatgagtgataaacaagacacgggcaagactagattagataaataatc |
24366432 |
T |
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| Q |
208 |
taatcatacaaaatgtattatacattaaatagttacaagaataaatgacctcctgtaatttcactaccaaat |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24366433 |
taatcatacaaaatgtattatacattaaatagttacaagaataaatgacttcctgtaatttcactaccaaat |
24366504 |
T |
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