View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0150-INSERTION-7 (Length: 459)
Name: NF0150-INSERTION-7
Description: NF0150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0150-INSERTION-7 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 8 - 391
Target Start/End: Original strand, 43103828 - 43104213
Alignment:
| Q |
8 |
caatcaactgagataatttttggagcaacaatgttccctttaccaatattagctttgttgataatatgaagcagaacattctcaagctcctctccatctc |
107 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43103828 |
caatcaactgagataatttttggaccaacaatgttccctttaccaatattagctttgttgataatatgaagcagaacattctcaagctcctctccatctc |
43103927 |
T |
|
| Q |
108 |
tccaaccatgtacatgtgccttaatgtcatttgaatttttagatactaaatcactcaatgcaaagttcattctaggcatcaaataatcactctctttgag |
207 |
Q |
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| T |
43103928 |
tccaaccatgtacatgtgccttaatgtcatttgaatttttagatactaaatcactcaatgcaaagttcattctaggcatcaaataatcactctctttgag |
43104027 |
T |
|
| Q |
208 |
ctttagactagggcaaaagtctccacttccatctcctaagtagatgattttcttctttccttcatcatcaagtgaattttgaaacatttccatcaccttt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43104028 |
ctttagactagggcaaaagtctccacttccatctcctaagtagatgattttcttctttccttcatcatcaagtgaattttgaaacatttccatcaccttt |
43104127 |
T |
|
| Q |
308 |
ccctgtttgtcattcgagggggagaaatgtgtcaatagaaag--nnnnnnnnttacaaatatctatatgataagatgtgattttat |
391 |
Q |
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| T |
43104128 |
ccctgtttgtcattcgagggggagaaatgtgtcaatagaaagaaaaaaaaaattacaaatatctatatgataagatgtgattttat |
43104213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 8 - 288
Target Start/End: Original strand, 43107051 - 43107334
Alignment:
| Q |
8 |
caatcaactgagataatttttggagcaacaatgttccctttaccaatattagctttgttgataatatgaagcagaacattctcaagctcctctccatctc |
107 |
Q |
| |
|
|||||||| ||||||||||||||| ||||| ||||||||||||||||||||| ||| ||||| |||||||||| ||||||||||| ||| || ||||||| |
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| T |
43107051 |
caatcaacagagataatttttggatcaacagtgttccctttaccaatattaggttttttgatgatatgaagcataacattctcaaactcttccccatctc |
43107150 |
T |
|
| Q |
108 |
tccaaccatgtacatgtgccttaatgtcatttgaatttttagatactaaatcactcaatgcaaagttcattctaggcatcaaat----aatcactctctt |
203 |
Q |
| |
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|||||||||||||||||||||| ||||| || ||||||||||| || |||||| |||| |||||||| ||||||||| | || |||||||||||| |
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| T |
43107151 |
tccaaccatgtacatgtgcctttatgtctttagaatttttagagacaaaatcaaacaattgaaagttca-tctaggcatgagataatcaatcactctctt |
43107249 |
T |
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| Q |
204 |
tgagctttagactagggcaaaagtctccacttccatctcctaagtagatgattttcttctttccttcatcatcaagtgaattttg |
288 |
Q |
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|||| |||| |||||| |||||||| | |||||||| ||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43107250 |
tgaggtttaaactaggacaaaagtcattatttccatcttctaggtagatgaatttcttctttccttcatcatcaagtgaattttg |
43107334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 389 - 459
Target Start/End: Original strand, 43104244 - 43104318
Alignment:
| Q |
389 |
tatatttttattttataaagttaaaa----gtatattaactcaatatagaagctgctctagctctacataacatg |
459 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
43104244 |
tatatttttattttataaagttaaaacaaagtatattaactcaatatagaagctgctctagctctacatagcatg |
43104318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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