View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0150_high_4 (Length: 294)

Name: NF0150_high_4
Description: NF0150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0150_high_4
NF0150_high_4
[»] chr4 (8 HSPs)
chr4 (29-265)||(6998994-6999228)
chr4 (121-264)||(13450092-13450235)
chr4 (142-241)||(25994916-25995015)
chr4 (120-223)||(13438057-13438159)
chr4 (179-265)||(39294677-39294763)
chr4 (177-241)||(9590498-9590561)
chr4 (177-241)||(2828250-2828314)
chr4 (180-264)||(26397756-26397839)
[»] chr1 (4 HSPs)
chr1 (126-264)||(25172823-25172961)
chr1 (186-264)||(35009515-35009592)
chr1 (180-264)||(3369606-3369689)
chr1 (177-241)||(46636953-46637017)
[»] chr8 (8 HSPs)
chr8 (120-264)||(12515249-12515391)
chr8 (177-264)||(11031604-11031691)
chr8 (179-257)||(9186476-9186554)
chr8 (177-264)||(10269361-10269447)
chr8 (32-113)||(44544903-44544983)
chr8 (32-117)||(39642147-39642229)
chr8 (189-264)||(10267981-10268056)
chr8 (32-88)||(3006958-3007014)
[»] chr7 (5 HSPs)
chr7 (151-253)||(34784215-34784316)
chr7 (174-264)||(34784948-34785038)
chr7 (177-264)||(43009504-43009590)
chr7 (32-120)||(38071332-38071420)
chr7 (177-243)||(46994846-46994912)
[»] chr2 (7 HSPs)
chr2 (141-258)||(11313022-11313138)
chr2 (120-257)||(10715280-10715416)
chr2 (29-120)||(15938729-15938818)
chr2 (202-264)||(363546-363608)
chr2 (190-264)||(40099115-40099189)
chr2 (61-120)||(13366522-13366580)
chr2 (177-264)||(14001324-14001408)
[»] chr5 (5 HSPs)
chr5 (177-264)||(24497899-24497986)
chr5 (179-259)||(25509691-25509771)
chr5 (120-222)||(1344594-1344695)
chr5 (120-202)||(1343417-1343498)
chr5 (177-241)||(18726750-18726814)
[»] chr3 (7 HSPs)
chr3 (120-257)||(26447919-26448055)
chr3 (147-264)||(30501282-30501398)
chr3 (141-268)||(40963173-40963299)
chr3 (179-250)||(7589467-7589538)
chr3 (177-264)||(17260643-17260729)
chr3 (190-264)||(5127289-5127363)
chr3 (190-264)||(5134544-5134618)
[»] scaffold0035 (1 HSPs)
scaffold0035 (32-114)||(73910-73992)
[»] chr6 (1 HSPs)
chr6 (179-240)||(31210271-31210332)
[»] scaffold0023 (1 HSPs)
scaffold0023 (38-81)||(113856-113898)
[»] scaffold0722 (1 HSPs)
scaffold0722 (190-259)||(4329-4397)


Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 29 - 265
Target Start/End: Original strand, 6998994 - 6999228
Alignment:
Q  29 agaaatcaccacccttaaattcaccttttccctttttactctttctctctcattgcaaatctaagggatagaaatacactggactctaatgtatttgggg 128  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  6998994 agaaatcaccacccttaaattcaccctttcccttttttctctttctctctcattgcaaatc-aagggatagaaatacactgaactctaatgtatttgggg 6999092  T
Q  129 aagaaagagtcgttgggaaagaaagaaagagtcgttgggggaggaaagaacattttatgcaaatcaatcaattttgtcgttgaaaattttggtcactatc 228  Q
    ||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||     
T  6999093 aagaaagagtcattggggaagaaagaaagagtccttgggggaggaaagaacattttatgcgaatcaatcaatttcgtccttgaaaattttggtcactatt 6999192  T
Q  229 ggtcaaattagtctccgcttatgtgacatctaacata 265  Q
    || |||||||||| | ||||||||| |||||||||||    
T  6999193 ggccaaattagtc-ctgcttatgtggcatctaacata 6999228  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 121 - 264
Target Start/End: Original strand, 13450092 - 13450235
Alignment:
Q  121 atttggggaagaaagagtcgttgggaaagaaagaaagagtcgttgggggaggaaagaacattttatgcaaatcaatcaattttgtcgttgaaaattttgg 220  Q
    |||||| |||||||||  | ||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||| ||| |||||||||    
T  13450092 atttggtgaagaaagaaccattggagaagaaagaaagagtcgttgggggaggaaagaacattttctgcaaatcaatcaattccgtccttggaaattttgg 13450191  T
Q  221 tcactatcggtcaaattagtctccgcttatgtgacatctaacat 264  Q
    ||| |||||| ||||||||||   ||||| ||||||||||||||    
T  13450192 tcattatcggccaaattagtccgtgcttacgtgacatctaacat 13450235  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 142 - 241
Target Start/End: Original strand, 25994916 - 25995015
Alignment:
Q  142 tgggaaagaaagaaagagtcgttgggggaggaaagaacattttatgcaaatcaatcaattttgtcgttgaaaattttggtcactatcggtcaaattagtc 241  Q
    |||| ||||||||||||| |||||||| ||||||||| ||||| | ||||||| ||||||| ||| |||||||||||||||| |||||| ||||||||||    
T  25994916 tggggaagaaagaaagagccgttggggaaggaaagaatattttctacaaatcagtcaatttcgtccttgaaaattttggtcattatcggccaaattagtc 25995015  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 223
Target Start/End: Complemental strand, 13438159 - 13438057
Alignment:
Q  120 tatttggggaagaaagagtcgttgggaaagaaagaaagagtcgttgggggaggaaagaacattttatgcaaatcaatcaattttgtcgttgaaaattttg 219  Q
    |||||||||||||| ||  | ||||  ||||||||||||| |||||||| |||||| |  ||||| ||||||||||||||||| ||||||| |||||||     
T  13438159 tatttggggaagaaggaaccattggagaagaaagaaagagccgttgggg-aggaaaaagtattttctgcaaatcaatcaatttcgtcgttggaaatttta 13438061  T
Q  220 gtca 223  Q
    ||||    
T  13438060 gtca 13438057  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 265
Target Start/End: Original strand, 39294677 - 39294763
Alignment:
Q  179 cattttatgcaaatcaatcaattttgtcgttgaaaattttggtcactatcggtcaaattagtctccgcttatgtgacatctaacata 265  Q
    |||||| ||||||||||||||||| | | ||| |||||||||||| ||||   |||||||||| | |||| |||||||||| |||||    
T  39294677 cattttctgcaaatcaatcaatttagcctttggaaattttggtcattatcatccaaattagtccctgcttctgtgacatctgacata 39294763  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 9590561 - 9590498
Alignment:
Q  177 aacattttatgcaaatcaatcaattttgtcgttgaaaattttggtcactatcggtcaaattagtc 241  Q
    |||||||| ||||| ||||||||||| ||| |||||||||||||| || ||||| ||||||||||    
T  9590561 aacattttctgcaa-tcaatcaatttcgtccttgaaaattttggttaccatcggccaaattagtc 9590498  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 2828250 - 2828314
Alignment:
Q  177 aacattttatgcaaatcaatcaattttgtcgttgaaaattttggtcactatcggtcaaattagtc 241  Q
    |||||||| ||||||||||||||||| ||| || ||||| || || | |||||| ||||||||||    
T  2828250 aacattttctgcaaatcaatcaatttagtccttcaaaatgtttgttattatcggccaaattagtc 2828314  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 264
Target Start/End: Original strand, 26397756 - 26397839
Alignment:
Q  180 attttatgcaaatcaatcaattttgtcgttgaaaattttggtcactatcggtcaaattagtctccgcttatgtgacatctaacat 264  Q
    ||||| ||||||||||||||||| ||| ||| ||||||| |||||| |||| ||||||| ||   |||| |||||||||| ||||    
T  26397756 attttctgcaaatcaatcaatttggtcattggaaatttt-gtcactttcggccaaattaatccttgcttgtgtgacatctgacat 26397839  T

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Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 126 - 264
Target Start/End: Original strand, 25172823 - 25172961
Alignment:
Q  126 gggaagaaagagtcgttgggaaagaaagaaagagtcgttgggggaggaaagaacattttatgcaaatcaatcaattttgtcgttgaaaattttggtcact 225  Q
    |||||||||||   |||||  |||||||||| ||||||||||||||||||||||||||| |||||||||||||| || ||| ||| ||||||||||||||    
T  25172823 gggaagaaagaactgttggagaagaaagaaatagtcgttgggggaggaaagaacattttctgcaaatcaatcaaattcgtccttggaaattttggtcact 25172922  T
Q  226 atcggtcaaattagtctccgcttatgtgacatctaacat 264  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  25172923 atcggtcaaattagtctctgcttatgtgacatctgacat 25172961  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 264
Target Start/End: Original strand, 35009515 - 35009592
Alignment:
Q  186 tgcaaatcaatcaattttgtcgttgaaaattttggtcactatcggtcaaattagtctccgcttatgtgacatctaacat 264  Q
    ||||||||||||||||| ||| ||  |||||||| ||||| |||  |||||||||||| |||| |||| ||||||||||    
T  35009515 tgcaaatcaatcaatttagtcattcgaaattttg-tcactttcgaccaaattagtctctgcttgtgtggcatctaacat 35009592  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 264
Target Start/End: Complemental strand, 3369689 - 3369606
Alignment:
Q  180 attttatgcaaatcaatcaattttgtcgttgaaaattttggtcactatcggtcaaattagtctccgcttatgtgacatctaacat 264  Q
    ||||| || |||||||||||||| ||| ||| |||||||| ||| | || | |||||||||||| |||| |||||||||| ||||    
T  3369689 attttctgtaaatcaatcaatttagtccttggaaattttg-tcattttcagccaaattagtctctgcttgtgtgacatctgacat 3369606  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 46637017 - 46636953
Alignment:
Q  177 aacattttatgcaaatcaatcaattttgtcgttgaaaattttggtcactatcggtcaaattagtc 241  Q
    |||||||| ||||||||||||||||| ||| || ||||| || || | |||||| ||||||||||    
T  46637017 aacattttctgcaaatcaatcaatttagtccttcaaaatgtttgttattatcggccaaattagtc 46636953  T

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Target: chr8 (Bit Score: 82; Significance: 9e-39; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 120 - 264
Target Start/End: Complemental strand, 12515391 - 12515249
Alignment:
Q  120 tatttggggaagaaagagtcgttgggaaagaaagaaagagtcgttgggggaggaaagaacattttatgcaaatcaatcaattttgtcgttgaaaattttg 219  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||  |||||||| |||||| ||||||||||||||||| ||| ||||||||||||    
T  12515391 tattgggggaagaaagagtcgttggggaagaaagaaagagtcgttggg--aggaaagatcattttttgcaaatcaatcaatttcgtccttgaaaattttg 12515294  T
Q  220 gtcactatcggtcaaattagtctccgcttatgtgacatctaacat 264  Q
    |||| |||||| ||||||||||   ||||||| ||||||| ||||    
T  12515293 gtcaatatcggccaaattagtccatgcttatgcgacatctgacat 12515249  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 177 - 264
Target Start/End: Complemental strand, 11031691 - 11031604
Alignment:
Q  177 aacattttatgcaaatcaatcaattttgtcgttgaaaattttggtcactatcggtcaaattagtctccgcttatgtgacatctaacat 264  Q
    |||||||||||||||||||| ||||| ||| ||| ||||||||||||||||||| |||||||||||| ||||||||||||||| ||||    
T  11031691 aacattttatgcaaatcaataaatttagtccttggaaattttggtcactatcggccaaattagtctctgcttatgtgacatctgacat 11031604  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 9186476 - 9186554
Alignment:
Q  179 cattttatgcaaatcaatcaattttgtcgttgaaaattttggtcactatcggtcaaattagtctccgcttatgtgacat 257  Q
    |||||| ||||||||||||||||| ||| ||| ||||||||||||||||||| |||||||||||| |||| ||||||||    
T  9186476 cattttctgcaaatcaatcaatttagtcattggaaattttggtcactatcggccaaattagtctctgcttgtgtgacat 9186554  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 264
Target Start/End: Original strand, 10269361 - 10269447
Alignment:
Q  177 aacattttatgcaaatcaatcaattttgtcgttgaaaattttggtcactatcggtcaaattagtctccgcttatgtgacatctaacat 264  Q
    |||||||||||||||||||||||||| ||| || ||||||||||||||||| || |||||||||| | |||| |||||||||| ||||    
T  10269361 aacattttatgcaaatcaatcaatttagtctttaaaaattttggtcactat-ggccaaattagtccctgcttgtgtgacatctgacat 10269447  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 44544903 - 44544983
Alignment:
Q  32 aatcaccacccttaaattcaccttttccctttttactctttctctctcattgcaaatctaagggatagaaatacactggact 113  Q
    |||| ||||| |||||| || ||||||||||||| ||||||||||||||||||||||| ||| ||| ||||| |||||||||    
T  44544903 aatctccacctttaaatgcatcttttcccttttttctctttctctctcattgcaaatc-aagagatggaaattcactggact 44544983  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 117
Target Start/End: Complemental strand, 39642229 - 39642147
Alignment:
Q  32 aatcaccacccttaaattcaccttttccctttttactctttctctctcattgcaaatctaagggatagaaatacactggactctaa 117  Q
    |||| |||||||||||| || ||||||||||||| |||||||  |||||||||| ||| ||||||| ||||| |||||||||||||    
T  39642229 aatccccacccttaaatgcatcttttcccttttttctctttc--tctcattgcatatc-aagggatggaaattcactggactctaa 39642147  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 264
Target Start/End: Complemental strand, 10268056 - 10267981
Alignment:
Q  189 aaatcaatcaattttgtcgttgaaaattttggtcactatcggtcaaattagtctccgcttatgtgacatctaacat 264  Q
    |||||||||||||| ||| ||| ||||| ||||||||||| | |||||||||||| |||| |||| ||||| ||||    
T  10268056 aaatcaatcaatttagtcattggaaattatggtcactatcagccaaattagtctctgcttgtgtggcatctgacat 10267981  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 3007014 - 3006958
Alignment:
Q  32 aatcaccacccttaaattcaccttttccctttttactctttctctctcattgcaaat 88  Q
    |||| |||||||||||| || ||||||| ||||| |||||||||||||||| |||||    
T  3007014 aatctccacccttaaatgcatcttttcctttttttctctttctctctcattacaaat 3006958  T

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Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 151 - 253
Target Start/End: Complemental strand, 34784316 - 34784215
Alignment:
Q  151 aagaaagagtcgttgggggaggaaagaacattttatgcaaatcaatcaattttgtcgttgaaaattttggtcactatcggtcaaattagtctccgcttat 250  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||||||||| |||||||||||| | ||||||    
T  34784316 aagaaagagtcgttgggg-aggaaagaacattttctgcaaatcaatcaatttcgtccttggaaattttggtcactatcagtcaaattagtccctgcttat 34784218  T
Q  251 gtg 253  Q
    |||    
T  34784217 gtg 34784215  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 174 - 264
Target Start/End: Original strand, 34784948 - 34785038
Alignment:
Q  174 aagaacattttatgcaaatcaatcaattttgtcgttgaaaattttggtcactatcggtcaaattagtctccgcttatgtgacatctaacat 264  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||   ||||||||| ||||| ||||    
T  34784948 aagaacattttctgcaaatcaatcaattttgtccttgaaaattttggtcactatcagccaaattagtccttgcttatgtggcatctgacat 34785038  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 264
Target Start/End: Original strand, 43009504 - 43009590
Alignment:
Q  177 aacattttatgcaaatcaatcaattttgtcgttgaaaattttggtcactatcggtcaaattagtctccgcttatgtgacatctaacat 264  Q
    |||||||| ||||| ||||||||||| ||| ||| ||||||||||||||||||| |||||||||| |  |||||||||||||| ||||    
T  43009504 aacattttttgcaa-tcaatcaatttcgtccttggaaattttggtcactatcggccaaattagtccctacttatgtgacatctgacat 43009590  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 38071332 - 38071420
Alignment:
Q  32 aatcaccacccttaaattcaccttttcccttttta-ctctttctctctcattgcaaatctaagggatagaaatacactggactctaatgt 120  Q
    |||| ||| |||||||| || |||||||||||||  ||||||||||||||||||||||| ||||||| ||||| |||| |||||||||||    
T  38071332 aatccccatccttaaatgcatcttttccctttttttctctttctctctcattgcaaatc-aagggatggaaattcactcgactctaatgt 38071420  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 46994912 - 46994846
Alignment:
Q  177 aacattttatgcaaatcaatcaattttgtcgttgaaaattttggtcactatcggtcaaattagtctc 243  Q
    |||||||| ||||||||||||||||| ||| ||  |||| || || |||||||| ||||||||||||    
T  46994912 aacattttctgcaaatcaatcaatttagtccttcgaaatgtttgttactatcggccaaattagtctc 46994846  T

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Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 141 - 258
Target Start/End: Complemental strand, 11313138 - 11313022
Alignment:
Q  141 ttgggaaagaaagaaagagtcgttgggggaggaaagaacattttatgcaaatcaatcaattttgtcgttgaaaattttggtcactatcggtcaaattagt 240  Q
    ||||| |||||| ||| || |||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||| | |||||| |||||||||    
T  11313138 ttggggaagaaataaatagccgttgggg-aggaaagaacattttatgcaaatcaatcaatttcgtctttgaaaattttggttattatcggccaaattagt 11313040  T
Q  241 ctccgcttatgtgacatc 258  Q
    | | || |||||||||||    
T  11313039 cactgcctatgtgacatc 11313022  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 120 - 257
Target Start/End: Complemental strand, 10715416 - 10715280
Alignment:
Q  120 tatttggggaagaaagagtcgttgggaaagaaagaaagagtcgttgggggaggaaagaacattttatgcaaatcaatcaattttgtcgttgaaaattttg 219  Q
    ||||||||||| |||||   | |||| |||||||||| || | || ||||||||||||||||||||| ||||||||||||||| ||| ||| ||| ||||    
T  10715416 tatttggggaaaaaagacctgctggggaagaaagaaatag-cttttggggaggaaagaacattttattcaaatcaatcaatttcgtccttggaaaatttg 10715318  T
Q  220 gtcactatcggtcaaattagtctccgcttatgtgacat 257  Q
    |||||||||| |||||||| ||   |||||||||||||    
T  10715317 gtcactatcgatcaaattaatccttgcttatgtgacat 10715280  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 15938818 - 15938729
Alignment:
Q  29 agaaatcaccacccttaaattcaccttttccctttttactctttctctctcattgcaaatctaagggatagaaatacactggactctaatgt 120  Q
    ||||||| ||||||||||||| |  ||||| || ||| ||||||||||||||||||||||| |||||||  ||||||| |||||||| ||||    
T  15938818 agaaatccccacccttaaattaattttttcactcttt-ctctttctctctcattgcaaatc-aagggatgaaaatacattggactcttatgt 15938729  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 264
Target Start/End: Original strand, 363546 - 363608
Alignment:
Q  202 ttgtcgttgaaaattttggtcactatcggtcaaattagtctccgcttatgtgacatctaacat 264  Q
    ||||| ||||||||||||||||||||||| ||||||||||   |||| |||||||||| ||||    
T  363546 ttgtccttgaaaattttggtcactatcggccaaattagtccatgcttgtgtgacatctgacat 363608  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 264
Target Start/End: Original strand, 40099115 - 40099189
Alignment:
Q  190 aatcaatcaattttgtcgttgaaaattttggtcactatcggtcaaattagtctccgcttatgtgacatctaacat 264  Q
    ||||||||||||||||| ||| ||||||| ||||||||||  ||| |||||| | ||||||||| ||||| ||||    
T  40099115 aatcaatcaattttgtccttggaaatttttgtcactatcgaccaatttagtccctgcttatgtggcatctgacat 40099189  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 13366580 - 13366522
Alignment:
Q  61 tttttactctttctctctcattgcaaatctaagggatagaaatacactggactctaatgt 120  Q
    ||||| ||||||||||||||||||||||| ||| ||| ||||| ||||| ||||||||||    
T  13366580 ttttttctctttctctctcattgcaaatc-aagagatggaaattcactgaactctaatgt 13366522  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 264
Target Start/End: Original strand, 14001324 - 14001408
Alignment:
Q  177 aacattttatgcaaatcaatcaattttgtcgttgaaaattttggtcactatcggtcaaattagtctccgcttatgtgacatctaacat 264  Q
    |||||||| ||||| ||||||||||| ||| ||||||||||  |||||||||   ||| |||||| | ||||||||||||||| ||||    
T  14001324 aacattttttgcaa-tcaatcaatttcgtccttgaaaattt--gtcactatcaaccaatttagtccctgcttatgtgacatctgacat 14001408  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 177 - 264
Target Start/End: Original strand, 24497899 - 24497986
Alignment:
Q  177 aacattttatgcaaatcaatcaattttgtcgttgaaaattttggtcactatcggtcaaattagtctccgcttatgtgacatctaacat 264  Q
    |||||||||||||||||||||||||| ||| ||| |||||||| |||||||||| |||||||||||| ||||||||| ||||||||||    
T  24497899 aacattttatgcaaatcaatcaatttggtccttgtaaattttgatcactatcggccaaattagtctctgcttatgtggcatctaacat 24497986  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 179 - 259
Target Start/End: Complemental strand, 25509771 - 25509691
Alignment:
Q  179 cattttatgcaaatcaatcaattttgtcgttgaaaattttggtcactatcggtcaaattagtctccgcttatgtgacatct 259  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||| |  ||||||||||||||    
T  25509771 cattttatgcaaatcaatcaattttgtccttgaaaattttggtcactatcagccaaattagtccctacttatgtgacatct 25509691  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 222
Target Start/End: Original strand, 1344594 - 1344695
Alignment:
Q  120 tatttggggaagaaagagtcgttgggaaagaaagaaagagtcgttgggggaggaaagaacattttatgcaaatcaatcaattttgtcgttgaaaattttg 219  Q
    ||||| |||||||||||| |||| || |||||| ||| ||||||||||||||||||||||||||| ||||||| ||||||||| ||| ||| ||||||||    
T  1344594 tatttagggaagaaagagccgttagggaagaaaaaaatagtcgttgggggaggaaagaacattttctgcaaatgaatcaatttcgtccttg-aaattttg 1344692  T
Q  220 gtc 222  Q
    |||    
T  1344693 gtc 1344695  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 1343498 - 1343417
Alignment:
Q  120 tatttggggaagaaagagtcgttgggaaagaaagaaagagtcgttgggggaggaaagaacattttatgcaaatcaatcaattt 202  Q
    ||||| ||||||||||| | ||| ||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||    
T  1343498 tatttagggaagaaagacttgttcggaaagaaagaaagagtcgtt-ggggaggaaagaatattttattcaaatcaatcaattt 1343417  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 18726814 - 18726750
Alignment:
Q  177 aacattttatgcaaatcaatcaattttgtcgttgaaaattttggtcactatcggtcaaattagtc 241  Q
    |||||||||||||||||||||||||| ||| || ||||| || || | ||||||| |||||||||    
T  18726814 aacattttatgcaaatcaatcaatttagtccttcaaaatgtttgttattatcggttaaattagtc 18726750  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 120 - 257
Target Start/End: Complemental strand, 26448055 - 26447919
Alignment:
Q  120 tatttggggaagaaagagtcgttgggaaagaaagaaagagtcgttgggggaggaaagaacattttatgcaaatcaatcaattttgtcgttgaaaattttg 219  Q
    |||||| ||| ||||||| | ||||| ||||||||| ||| ||||| || ||||||||||||||| ||||||||||||||||| ||| ||| ||||||||    
T  26448055 tatttgaggatgaaagagccattggggaagaaagaaggagccgttgagg-aggaaagaacattttctgcaaatcaatcaatttcgtccttggaaattttg 26447957  T
Q  220 gtcactatcggtcaaattagtctccgcttatgtgacat 257  Q
    || |||||| | ||||||||||   |||||||||||||    
T  26447956 gttactatcagccaaattagtccatgcttatgtgacat 26447919  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 147 - 264
Target Start/End: Complemental strand, 30501398 - 30501282
Alignment:
Q  147 aagaaagaaagagtcgttgggggaggaaagaacattttatgcaaatcaatcaattttgtcgttgaaaattttggtcactatcggtcaaattagtctccgc 246  Q
    |||||||| |||| |||||||| ||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||||||||| | |||||||||||  ||    
T  30501398 aagaaagatagagccgttgggg-aggaaagaacattttctgcaaatcaatcaatttcgtccttggaaattttggtcactatcagccaaattagtctttgc 30501300  T
Q  247 ttatgtgacatctaacat 264  Q
    || |||| ||||| ||||    
T  30501299 ttgtgtggcatctgacat 30501282  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 141 - 268
Target Start/End: Original strand, 40963173 - 40963299
Alignment:
Q  141 ttgggaaagaaagaaagagtcgttgggggaggaaagaacattttatgcaaatcaatcaattttgtcgttgaaaattttggtcactatcggtcaaattagt 240  Q
    ||||| |||||| |||||| |||||||| ||||||||||||||| |||||||||||||||||  || ||| |||||||||| |||||||| ||||||||     
T  40963173 ttggggaagaaataaagagccgttgggg-aggaaagaacattttctgcaaatcaatcaatttcatctttggaaattttggttactatcggccaaattagc 40963271  T
Q  241 ctccgcttatgtgacatctaacatatga 268  Q
    | |   ||||||| |||||| |||||||    
T  40963272 cactctttatgtggcatctatcatatga 40963299  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 7589538 - 7589467
Alignment:
Q  179 cattttatgcaaatcaatcaattttgtcgttgaaaattttggtcactatcggtcaaattagtctccgcttat 250  Q
    |||||| ||||||||||||||||||||| ||| |||||||| ||| |||||  |||||||||| | ||||||    
T  7589538 cattttctgcaaatcaatcaattttgtcattggaaattttgatcattatcgaccaaattagtccctgcttat 7589467  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 264
Target Start/End: Original strand, 17260643 - 17260729
Alignment:
Q  177 aacattttatgcaaatcaatcaattttgtcgttgaaaattttggtcactatcggtcaaattagtctccgcttatgtgacatctaacat 264  Q
    |||||||| ||||| ||||||||||| ||| |||||||||||||||||||| |  |||||||||| |  |||||||| ||||| ||||    
T  17260643 aacattttctgcaa-tcaatcaatttcgtccttgaaaattttggtcactattgaccaaattagtccctacttatgtggcatctgacat 17260729  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 264
Target Start/End: Original strand, 5127289 - 5127363
Alignment:
Q  190 aatcaatcaattttgtcgttgaaaattttggtcactatcggtcaaattagtctccgcttatgtgacatctaacat 264  Q
    ||||||||||||||||| ||| ||||||| |||||||||   ||| |||||| | ||||||||| ||||| ||||    
T  5127289 aatcaatcaattttgtccttggaaatttttgtcactatcaaccaatttagtccctgcttatgtggcatctgacat 5127363  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 264
Target Start/End: Original strand, 5134544 - 5134618
Alignment:
Q  190 aatcaatcaattttgtcgttgaaaattttggtcactatcggtcaaattagtctccgcttatgtgacatctaacat 264  Q
    ||||||||||||||||| ||| ||||||| |||||||||   ||| |||||| | ||||||||| ||||| ||||    
T  5134544 aatcaatcaattttgtccttggaaatttttgtcactatcaaccaatttagtccctgcttatgtggcatctgacat 5134618  T

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Target: scaffold0035 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 73910 - 73992
Alignment:
Q  32 aatcaccacccttaaattcaccttttccctttttactctttctctctcattgcaaatctaagggatagaaatacactggactc 114  Q
    |||| |||||||||||| || |||||| |||||| ||||||| ||||||||||||||||||| ||| ||||| ||||| ||||    
T  73910 aatccccacccttaaatacatcttttctcttttttctctttccctctcattgcaaatctaagagatggaaattcactgcactc 73992  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 31210271 - 31210332
Alignment:
Q  179 cattttatgcaaatcaatcaattttgtcgttgaaaattttggtcactatcggtcaaattagt 240  Q
    |||||| | ||||||||||||||| ||| |||||||||||||| | |||||| |||||||||    
T  31210271 cattttctacaaatcaatcaatttagtccttgaaaattttggttattatcggccaaattagt 31210332  T

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Target: scaffold0023 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 113856 - 113898
Alignment:
Q  38 cacccttaaattcaccttttccctttttactctttctctctcat 81  Q
    ||||||||||||| |||||||||||||| |||||||||||||||    
T  113856 cacccttaaattctccttttcccttttt-ctctttctctctcat 113898  T

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Target: scaffold0722 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 4397 - 4329
Alignment:
Q  190 aatcaatcaattttgtcgttgaaaattttggtcactatcggtcaaattagtctccgcttatgtgacatct 259  Q
    ||||||||||||| ||||||| ||||||| |||||| ||| |||||||||| |  |||| ||||||||||    
T  4397 aatcaatcaatttggtcgttggaaatttt-gtcactttcgatcaaattagtatatgcttgtgtgacatct 4329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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