View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0151-INSERTION1 (Length: 188)
Name: NF0151-INSERTION1
Description: NF0151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0151-INSERTION1 |
 | |
|
| [»] chr6 (10 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 142; Significance: 9e-75; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 9e-75
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 1888300 - 1888493
Alignment:
| Q |
8 |
caagccactccaaattgttatttctgttgccttgagtgttatattccttggtgatactcttcatgttggaaggtatagttaattcaatttttgaattgga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1888300 |
caagccactccaaattgttatttctgttgccttgagtgttatattccttggtgatactcttcatgttggaaggtatagttaattcaatttttgaattgga |
1888399 |
T |
|
| Q |
108 |
ttcttggcattgttcttgctaattt-------------ttaatgatatggttgttgataatcattaatttgtgcatttctttctatagtataat |
188 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
1888400 |
ttcttggcattgttcttgctaatttttattgttccaacttaatgacatggttgttgagaatcattaatttgtgcatttctttctatagtataat |
1888493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 1898862 - 1898969
Alignment:
| Q |
8 |
caagccactccaaattgttatttctgttgccttgagtgttatattccttggtgatactcttcatgttggaaggtatagttaattcaatttttgaattgga |
107 |
Q |
| |
|
||||||||| |||||||||||||||| || ||| ||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||| ||| || |
|
|
| T |
1898862 |
caagccacttcaaattgttatttctgctggcttaggtgttatgtttcttggtgatactcttcatgttggaaggtatagtaaattcaatttttgcatttga |
1898961 |
T |
|
| Q |
108 |
ttcttggc |
115 |
Q |
| |
|
|||||||| |
|
|
| T |
1898962 |
ttcttggc |
1898969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 1881000 - 1881090
Alignment:
| Q |
8 |
caagccactccaaattgttatttctgttgccttgagtgttatattccttggtgatactcttcatgttggaaggtatagttaattcaatttt |
98 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
1881000 |
caagccactccaaattgtgttttctgttgccttggctgttatattccttggtgatactcttcatgttggaaggtatggtttattcaatttt |
1881090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 1904067 - 1904158
Alignment:
| Q |
8 |
caagccactccaaattgttatttctgttgccttgagtgttatattccttggtgatactcttcatgttggaaggtatagttaattcaattttt |
99 |
Q |
| |
|
||||||||| |||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||| |||| || ||||||| |
|
|
| T |
1904067 |
caagccacttcaaattgttatttctgctggcttgggtgttatattccttggtgatactcttcatgttggaaggtatggttatttgaattttt |
1904158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 1908300 - 1908391
Alignment:
| Q |
8 |
caagccactccaaattgttatttctgttgccttgagtgttatattccttggtgatactcttcatgttggaaggtatagttaattcaattttt |
99 |
Q |
| |
|
||||||||| |||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||| |||| || ||||||| |
|
|
| T |
1908300 |
caagccacttcaaattgttatttctgctggcttgggtgttatattccttggtgatactcttcatgttggaaggtatggttatttgaattttt |
1908391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 1914180 - 1914270
Alignment:
| Q |
8 |
caagccactccaaattgttatttctgttgccttgagtgttatattccttggtgatactcttcatgttggaaggtatagttaattcaatttt |
98 |
Q |
| |
|
||||||||| ||||||||||| |||||| ||| | ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
1914180 |
caagccactgcaaattgttatctctgtttggttgggagttatattccttggtgatactcttcatcttggaaggtatggttaattcaatttt |
1914270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 1893150 - 1893239
Alignment:
| Q |
8 |
caagccactccaaattgttatttctgttgccttgagtgttatattccttggtgatactcttcatgttggaaggtatagttaattcaattt |
97 |
Q |
| |
|
|||||| || ||||||||||||||||||| ||| | ||||||||||||||||||| ||||||| ||||||||||| ||||||| ||||| |
|
|
| T |
1893150 |
caagcctctacaaattgttatttctgttggcttaggagttatattccttggtgatattcttcatattggaaggtatggttaatttaattt |
1893239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 1881369 - 1881414
Alignment:
| Q |
90 |
ttcaatttttgaattggattcttggcattgttcttgctaattttta |
135 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1881369 |
ttcaatatttgaattggatttttggcattgttcttgctaattttta |
1881414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 1881428 - 1881474
Alignment:
| Q |
133 |
ttaatgatatggttgttgataatcattaatttgtgcatttctttcta |
179 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
1881428 |
ttaatcatatggttgttgacaatcattaatttgtgtatttctttcta |
1881474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 1919178 - 1919239
Alignment:
| Q |
20 |
aattgttatttctgttgccttgagtgttatattccttggtgatactcttcatgttggaaggt |
81 |
Q |
| |
|
|||||||||| ||||||| || || || | ||||||||||||||||||||| ||||||||| |
|
|
| T |
1919178 |
aattgttattgctgttgctatgggtattttgttccttggtgatactcttcatattggaaggt |
1919239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 491 times since January 2019
Visitors: 2226