View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0151-INSERTION11 (Length: 397)
Name: NF0151-INSERTION11
Description: NF0151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0151-INSERTION11 |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 8 - 395
Target Start/End: Complemental strand, 10216885 - 10216499
Alignment:
| Q |
8 |
gaagcaacaccagtggggtacttccatgatatgcagcctaatgtatgagccaactggattacagtcttggctgttttctcgttccatttctaaggcttta |
107 |
Q |
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| T |
10216885 |
gaagcaacaccagtggg-tacttccatgatatgcagcctaatgtatgagccaactggaatacagtcttggctgttttctcgttccatttctaaggcttta |
10216787 |
T |
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| Q |
108 |
gcaagaacctgcttttgtgttcttttgaaactatgataattataatttttgggataatcttgaggtagagattcctgataaaattagaaatgtcagannn |
207 |
Q |
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| T |
10216786 |
gcaagaacctgcttttgtgttcttttgaaactatgataattataatttttgggataatcttgaggtagagattcctgataaaattagaaatgtcagattt |
10216687 |
T |
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| Q |
208 |
nnnngctgttaatggcaacgagtaattaaagaataaccaaatgataaacataccataggatcccatatagaattccgaatagacttgagtcccttatatt |
307 |
Q |
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| T |
10216686 |
ttttgctgttaatggcaacgactaattaaagaataagaaaatgataaacataccataggatcccatatagaattccgaatagacttgagtcccttatatt |
10216587 |
T |
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| Q |
308 |
ttgcaaaccgtgtccgagctgggacatccaatggtgtatccacttcatcaggaaactctacaacaacaaacgaatatcaagcaacaaa |
395 |
Q |
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| T |
10216586 |
ttgcaaaccgtgtccgagctgggacatccaatggtgtatccacttcatcaggaaactctacaacaacaaacgaatatcaagcaacaaa |
10216499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 80 - 187
Target Start/End: Complemental strand, 5587749 - 5587643
Alignment:
| Q |
80 |
gttttctcgttccatttctaaggctttagcaagaacctgcttttgtgttcttttgaaactatgataattataatttttgggataatcttgaggtagagat |
179 |
Q |
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| T |
5587749 |
gttttcttgttccaattctaaagctttagcaagaacttgtttttc-gttctttagaaactatgataattaaaatttctgtgataatcttgaggtagagat |
5587651 |
T |
|
| Q |
180 |
tcctgata |
187 |
Q |
| |
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||| |||| |
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| T |
5587650 |
tccagata |
5587643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 80 - 187
Target Start/End: Complemental strand, 5592710 - 5592604
Alignment:
| Q |
80 |
gttttctcgttccatttctaaggctttagcaagaacctgcttttgtgttcttttgaaactatgataattataatttttgggataatcttgaggtagagat |
179 |
Q |
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||||||| |||||| |||||| |||||||||||||| || |||| ||||||| |||||||||||||||| ||||| || |||||||||||||||||||| |
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| T |
5592710 |
gttttcttgttccaattctaaagctttagcaagaacttgtttttc-gttctttagaaactatgataattaaaatttctgtgataatcttgaggtagagat |
5592612 |
T |
|
| Q |
180 |
tcctgata |
187 |
Q |
| |
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||| |||| |
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| T |
5592611 |
tccagata |
5592604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 27 - 204
Target Start/End: Original strand, 53887038 - 53887215
Alignment:
| Q |
27 |
acttccatgatatgcagcctaatgtatgagccaactggattacagtcttggctgttttctcgttccatttctaaggctttagcaagaacctgcttttgtg |
126 |
Q |
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|||||| |||||||||||||| ||||||||||||| | |||||| | ||||||||| ||||| |||||| |||||||||||||| ||||||||| |
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| T |
53887038 |
acttccttgatatgcagcctagcatatgagccaactgaaacacagtcctctctgttttctttttccaattctaaagctttagcaagaacatgcttttgta |
53887137 |
T |
|
| Q |
127 |
ttcttttgaaactatgataattataatttttgggataatcttgaggtagagattcctgataaaattagaaatgtcaga |
204 |
Q |
| |
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|||||| ||| ||| | | | |||| |||||| ||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
53887138 |
gtcttttaaaattatcaaactcataaattttggcataatcttgaggtagagattcctgatattattacaaatgtcaga |
53887215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 289 - 376
Target Start/End: Original strand, 53887305 - 53887392
Alignment:
| Q |
289 |
gacttgagtcccttatattttgcaaaccgtgtccgagctgggacatccaatggtgtatccacttcatcaggaaactctacaacaacaa |
376 |
Q |
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|||||||||||| | |||||||||||||| ||| ||| || |||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
53887305 |
gacttgagtcccctgtattttgcaaaccgcttcctagccggaacatccaatggtgtatccacttcatcaggatactctacaccaacaa |
53887392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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