View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0151-INSERTION2 (Length: 658)
Name: NF0151-INSERTION2
Description: NF0151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0151-INSERTION2 |
 | |
|
| [»] chr4 (13 HSPs) |
| |
|
| [»] chr2 (2 HSPs) |
| |
|
| [»] scaffold0262 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 635; Significance: 0; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 8 - 658
Target Start/End: Original strand, 55907681 - 55908331
Alignment:
| Q |
8 |
ttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaacattgcttctctacataacaatgaccttgttcttatttctgattgct |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
55907681 |
ttacgagctttctcccaaaatattacaactttgaattctctcatttgttccaacattgcttctctacgtaacaatgaccttgttcttatttctgattgct |
55907780 |
T |
|
| Q |
108 |
tccctttccttgaagaacttgactttagtagtagtaatcctttcgctagtagagattttgatatgaatgtttgggtaaagactatggcaatggtgcttcc |
207 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55907781 |
tccctttccttgaagaacttgacttcagtagtagtaatcctttcgctagtagagattttgatatgaatgtttgggtaaagactatggcaatggtgcttcc |
55907880 |
T |
|
| Q |
208 |
taagctccgcaaggttaatctctcgggttattataatatagatgactcgtcacttttgcatttatgtaagaattgtgagtttcttgaagaggttatgatg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55907881 |
taagctccgcaaggttaatctctcgggttattataatatagacgactcgtcacttttgcatttatgtaagaattgtgagtttcttgaagaggttatgatg |
55907980 |
T |
|
| Q |
308 |
ttgaaatgtccatttttaactcatgatggtgtcgcttctgctatccgtgagagacctactttgaagtctctatccgttagatggagaacaaatggaagcc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55907981 |
ttgaaatgtccatttttaactcatgatggtgtcgcttctgctatccgtgagagacctactttgaagtctctatccgttagatggagaacaaatggaagcc |
55908080 |
T |
|
| Q |
408 |
atgacaacattggttcaaacttcattggctcgttggtgagtttgaatggcttaacttgtcttaatttgtcgtctttgcgcatctcggatgaattgctttt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55908081 |
atgacaacattggttcaaacttcattggctcgttggtgagtttgaatggcttaacttgtcttaatttgtcgtctttgcgcatctcggatgaattgctttt |
55908180 |
T |
|
| Q |
508 |
ttctattgcaatgggaggtcttcctttgagaagacttgtcctccaaaattgcaccggctataattatgttggaatatactctttgttatccaagtgtcgt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55908181 |
ttctattgcaatgggaggtcttcctttgagaagacttgtcctccaaaattgcaccggctataattatgttggaatatactctttgttatccaagtgtcgt |
55908280 |
T |
|
| Q |
608 |
atacaacatttggatcttcaaaatgccacgtttatgaatgatcacgatgtc |
658 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55908281 |
atacaacatttggatcttcaaaatgccacgtttatgaatgatcacgatgtc |
55908331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 411 - 630
Target Start/End: Original strand, 3438006 - 3438228
Alignment:
| Q |
411 |
acaacattggttcaaacttcattggctcgttggtgagtttgaatggcttaacttgtcttaatttgtcgtctttgcgcatctcggatgaattgcttttttc |
510 |
Q |
| |
|
|||||||| |||| ||||||||| || |||||||||| |||| || |||||||||||| |||||||||||| | ||| |||||||||| |||| || |
|
|
| T |
3438006 |
acaacattaattcacacttcattgacttgttggtgagtctgaagggattaacttgtcttgatttgtcgtcttcatgtatcccggatgaattactttcctc |
3438105 |
T |
|
| Q |
511 |
tattgcaatgggaggtcttcctttgagaagacttgtcctccaaaattgcaccggctataattatgttggaatatactctttgttatccaagtgtc---gt |
607 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||| ||||| || ||| | ||| ||||||||||||||| || |
|
|
| T |
3438106 |
tattgcaattggaggtcttcctttgagaaggcttgtcctccacaattgcaccggctatagttatgctgaaatcttttctctgttatccaagtgtcaatgt |
3438205 |
T |
|
| Q |
608 |
atacaacatttggatcttcaaaa |
630 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
3438206 |
atacaacatttggatcttcaaaa |
3438228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 324 - 633
Target Start/End: Complemental strand, 547743 - 547434
Alignment:
| Q |
324 |
taactcatgatggtgtcgcttctgctatccgtgagagacctactttgaagtctctatccgttagatggagaacaaatggaagccatgacaacattggttc |
423 |
Q |
| |
|
||||| ||||||| | |||||||||||||||| |||||| |||||| |||||| ||| ||| |||| |||| ||||| ||||||| || |||| |
|
|
| T |
547743 |
taactaatgatggcatagcttctgctatccgtgtgagaccatctttgaggtctctctccattaaatggccgtcaaagggaaggcatgaca---ttagttc |
547647 |
T |
|
| Q |
424 |
aaacttcattggctcgttggtgagtttgaatggcttaacttgtcttaatttgtcgtctttgcgcatctcggatgaattgcttttttctattgcaatggga |
523 |
Q |
| |
|
|| | |||| ||||||| || ||||||| ||||||||||||||| |||| ||||| || ||||||||| ||||| | ||||||||||||| | |
|
|
| T |
547646 |
gcaccttattgactcgttgatgtgtttgaagggcttaacttgtcttgattttcggtcttcacgtatctcggatatgttgctctcctctattgcaatggaa |
547547 |
T |
|
| Q |
524 |
ggtcttcctttgagaagacttgtcctccaaaattgcaccggctataattatgttggaatatactctttgttatccaagtg---tcgtatacaacatttgg |
620 |
Q |
| |
|
| | |||||||||||| ||||||||||||||||| |||||||| ||||| |||||||| | ||| || |||||||| | ||| |||||||| | |
|
|
| T |
547546 |
gctattcctttgagaaagcttgtcctccaaaattgtttcggctatagttatgctggaatatcttgttttttgtccaagtgccaacatatccaacatttag |
547447 |
T |
|
| Q |
621 |
atcttcaaaatgc |
633 |
Q |
| |
|
||||||||||||| |
|
|
| T |
547446 |
atcttcaaaatgc |
547434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 12 - 137
Target Start/End: Original strand, 3437630 - 3437755
Alignment:
| Q |
12 |
gagctttctcccaaaatattacaactttgacttctctcatttgttccaacattgcttctctacataacaatgaccttgttcttatttctgattgcttccc |
111 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||| |||||||||| ||| || ||| ||| || | || ||||||| |||||||||||||| |
|
|
| T |
3437630 |
gagctttctcccaaaagattacaactttgacctctctcagttgttccaactttgattttctccatgaccgctatctaattcttatctctgattgcttccc |
3437729 |
T |
|
| Q |
112 |
tttccttgaagaacttgactttagta |
137 |
Q |
| |
|
||| ||||||| ||||||| |||||| |
|
|
| T |
3437730 |
tttacttgaagtacttgaccttagta |
3437755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 548043 - 547943
Alignment:
| Q |
30 |
ttacaactttgacttctctcatttgttccaacattgcttctctacataacaatgaccttgttcttatttctgattgcttccctttccttgaagaacttga |
129 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||| |||||| |||||| ||||| ||| ||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
548043 |
ttacaactttgaactctctcacttgttccaacattgattctctctgtaacaacgacctggtttgtatatctggttgcttccctttccttgaagaacttga |
547944 |
T |
|
| Q |
130 |
c |
130 |
Q |
| |
|
| |
|
|
| T |
547943 |
c |
547943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 1755598 - 1755485
Alignment:
| Q |
13 |
agctttctcccaaaatattacaactttgacttctctcatttgttccaacattgcttctctacataacaatgaccttgttcttatttctgattgcttccct |
112 |
Q |
| |
|
||||||||| ||||| |||||||||||||| ||||||| ||||||||||| ||| ||| |||| ||||||| | | || ||| |||| || |||||| |
|
|
| T |
1755598 |
agctttctctcaaaagattacaactttgacctctctcacatgttccaacatcgctcatctccataccaatgacttcttcctcattgctgactgtttccct |
1755499 |
T |
|
| Q |
113 |
ttccttgaagaact |
126 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
1755498 |
ttgcttgaagaact |
1755485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 431 - 600
Target Start/End: Original strand, 21833760 - 21833929
Alignment:
| Q |
431 |
attggctcgttggtgagtttgaatggcttaacttgtcttaatttgtcgtctttgcgcatctcggatgaattgcttttttctattgcaatgggaggtcttc |
530 |
Q |
| |
|
|||||||| || ||||||||||| || || |||||||||| |||| |||||| |||| |||||| || || | |||||||||| || |||||||| |
|
|
| T |
21833760 |
attggctcattagtgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatcttggatgagttactctactctattgcaagggaaggtcttc |
21833859 |
T |
|
| Q |
531 |
ctttgagaagacttgtcctccaaaattgcaccggctataattatgttggaatatactctttgttatccaa |
600 |
Q |
| |
|
|||| | || |||||||| | ||| ||||||||||||| ||||| |||||| | | |||||||||||| |
|
|
| T |
21833860 |
ctttaacgaggcttgtccttcgaaaatgcaccggctatagttatgatggaatcttttgtttgttatccaa |
21833929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 509 - 601
Target Start/End: Complemental strand, 641574 - 641482
Alignment:
| Q |
509 |
tctattgcaatgggaggtcttcctttgagaagacttgtcctccaaaattgcaccggctataattatgttggaatatactctttgttatccaag |
601 |
Q |
| |
|
|||||||||||| ||| |||||||||| |||||||||||| |||||||||||||||| ||||| |||||| | | ||||||||||||| |
|
|
| T |
641574 |
tctattgcaatgaaaggccttcctttgacgagacttgtcctctgcaattgcaccggctatacttatgatggaatcttgtgtttgttatccaag |
641482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 571377 - 571330
Alignment:
| Q |
11 |
cgagctttctcccaaaatattacaactttgacttctctcatttgttcc |
58 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
571377 |
cgagcattctcccaaaatattacaactttgacatctctcaattgttcc |
571330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 661905 - 661854
Alignment:
| Q |
11 |
cgagctttctcccaaaatattacaactttgacttctctcatttgttccaaca |
62 |
Q |
| |
|
||||||||||||||| ||||||||||||| || ||||||||||||| ||||| |
|
|
| T |
661905 |
cgagctttctcccaatatattacaactttaacctctctcatttgttacaaca |
661854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 312
Target Start/End: Original strand, 1527362 - 1527472
Alignment:
| Q |
202 |
gcttcctaagctccgcaaggttaatctctcgggttattataatatagatgactcgtcacttttgcatttatgtaagaattgtgagtttcttgaagaggtt |
301 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||| || | || | ||||||||| |||||||| || ||||| ||||||| |||||| ||||| || |
|
|
| T |
1527362 |
gcttcctaagctccacaaggttaatctctctggtcatcactatgcaaatgactcgttgcttttgcacttgtgtaaaaattgtgtatttcttcaagagatt |
1527461 |
T |
|
| Q |
302 |
atgatgttgaa |
312 |
Q |
| |
|
|||||||||| |
|
|
| T |
1527462 |
ttgatgttgaa |
1527472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 553806 - 553767
Alignment:
| Q |
11 |
cgagctttctcccaaaatattacaactttgacttctctca |
50 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
553806 |
cgagctttctcccaaaacattacaactttgacctctctca |
553767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 431 - 479
Target Start/End: Complemental strand, 6007054 - 6007006
Alignment:
| Q |
431 |
attggctcgttggtgagtttgaatggcttaacttgtcttaatttgtcgt |
479 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||||||||||| ||||||||| |
|
|
| T |
6007054 |
attgactcgttggtgaaattgaaaggcttaacttgtcttgatttgtcgt |
6007006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 587; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 8 - 658
Target Start/End: Original strand, 1036617 - 1037267
Alignment:
| Q |
8 |
ttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaacattgcttctctacataacaatgaccttgttcttatttctgattgct |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| |
|
|
| T |
1036617 |
ttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaacattgcttctatatgtaacaatgatcttgttcttatttctgattgct |
1036716 |
T |
|
| Q |
108 |
tccctttccttgaagaacttgactttagtagtagtaatcctttcgctagtagagattttgatatgaatgtttgggtaaagactatggcaatggtgcttcc |
207 |
Q |
| |
|
| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1036717 |
ttcctttccttgaagaacttgacttcaatagtagtaatcctttcgctagtagagattttgatatgaatgtttgggtaaagactatggcaatggtgcttcc |
1036816 |
T |
|
| Q |
208 |
taagctccgcaaggttaatctctcgggttattataatatagatgactcgtcacttttgcatttatgtaagaattgtgagtttcttgaagaggttatgatg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1036817 |
taagctccgcaaggttaatctctcgggttattataatatagacgactcgtcacttttgcatttatgtaagaattgtgagtttcttgaagaggttatgatg |
1036916 |
T |
|
| Q |
308 |
ttgaaatgtccatttttaactcatgatggtgtcgcttctgctatccgtgagagacctactttgaagtctctatccgttagatggagaacaaatggaagcc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
1036917 |
ttgaaatgtccatttttaactcatgatgatgtcgcttctgctatccgtgagagacctactttgaagtctctatttgttagatggagaacaaatggaaggc |
1037016 |
T |
|
| Q |
408 |
atgacaacattggttcaaacttcattggctcgttggtgagtttgaatggcttaacttgtcttaatttgtcgtctttgcgcatctcggatgaattgctttt |
507 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
1037017 |
atgacaacattggtgcaaacttcattggctcgttggtgagtttgaatggcttaacttgtcttaatttgtcatctttgcgcatttcggatgaattgctttt |
1037116 |
T |
|
| Q |
508 |
ttctattgcaatgggaggtcttcctttgagaagacttgtcctccaaaattgcaccggctataattatgttggaatatactctttgttatccaagtgtcgt |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1037117 |
ttctattgcaatgggaggtcttcctttgagaagacttgtcctccaaaattgcaccagctataattatgttggaatatactctttgttatccaagtgtcgt |
1037216 |
T |
|
| Q |
608 |
atacaacatttggatcttcaaaatgccacgtttatgaatgatcacgatgtc |
658 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1037217 |
atacaacatttggatcttcaaaatgccacgtttatgaatgatcacgatgtc |
1037267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 45244859 - 45244909
Alignment:
| Q |
13 |
agctttctcccaaaatattacaactttgacttctctcatttgttccaacat |
63 |
Q |
| |
|
|||||||||||||| ||||| || |||||| ||||||||||||| |||||| |
|
|
| T |
45244859 |
agctttctcccaaactattagaaatttgacctctctcatttgttacaacat |
45244909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 555 - 657
Target Start/End: Complemental strand, 507 - 414
Alignment:
| Q |
555 |
attgcaccggctataattatgttggaatatactctttgttatccaagtgtcgtatacaacatttggatcttcaaaatgccacgtttatgaatgatcacga |
654 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
507 |
attgcaccggctataattatgctggaatctactctttgttatccaa---------acaacatttggatcttcaaaatgccatgtttatgaatgatcatga |
417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 396 - 627
Target Start/End: Original strand, 17627397 - 17627631
Alignment:
| Q |
396 |
caaatggaagccatgacaacattggttcaaacttcattggctcgttggtgagtttgaatggcttaacttgtcttaatttgtcgtctttgcgcatctcgga |
495 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||| | || |||| ||||||||||||| || ||||| |||| ||||| ||| |||||||||||| || |
|
|
| T |
17627397 |
caaatggaagccatgacaacatcagttcacactttactgactcgctggtgagtttgaaagggttaacaaatcttgatttgccgtttttgcgcatctcaga |
17627496 |
T |
|
| Q |
496 |
tgaattgcttttttctattgcaatgggaggtcttcctttgagaagacttgtcctccaaaattgcaccggctataattatgttggaatatactctttgtta |
595 |
Q |
| |
|
| || || | |||||||||||| | || | || |||||||||| ||||||||| | |||||| ||||| |||| |||||||| ||||||||| |
|
|
| T |
17627497 |
tatgttcctctcttctattgcaattgaagttatttctttgagaaggcttgtcctcagagattgcattaactatagttattctggaatattttctttgtta |
17627596 |
T |
|
| Q |
596 |
tccaagtgtc---gtatacaacatttggatcttca |
627 |
Q |
| |
|
|||| ||||| |||| ||||||||||||||||| |
|
|
| T |
17627597 |
tccatgtgtcaatgtatccaacatttggatcttca |
17627631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 189 - 381
Target Start/End: Original strand, 17627169 - 17627361
Alignment:
| Q |
189 |
ctatggcaatggtgcttcctaagctccgcaaggttaatctctcgggttattataatatagatgactcgtcacttttgcatttatgtaagaattgtgagtt |
288 |
Q |
| |
|
||||| |||||||||||||||||||||||||| | ||| | || || |||| ||||| |||||| | ||||||||| || ||||| ||||||||||| |
|
|
| T |
17627169 |
ctatgtcaatggtgcttcctaagctccgcaagataaatttatctcgtcattacgatataagtgactcattacttttgcacttgtgtaaaaattgtgagtt |
17627268 |
T |
|
| Q |
289 |
tcttgaagaggttatgatgttgaaatgtccatttttaactcatgatggtgtcgcttctgctatccgtgagagacctactttgaagtctctatc |
381 |
Q |
| |
|
||| ||||||||| || |||| || | | ||| |||||| |||||| | |||||||| |||||||||||||| |||||| |||| |||| |
|
|
| T |
17627269 |
tctcgaagaggttgtgttgttcaagtattcatccttaacttgtgatggcattgcttctgccatccgtgagagaccatctttgaggtctttatc |
17627361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 272 - 429
Target Start/End: Complemental strand, 44244857 - 44244710
Alignment:
| Q |
272 |
tgtaagaattgtgagtttcttgaagaggttatgatgttgaaatgtccatttttaactcatgatggtgtcgcttctgctatccgtgagagacctactttga |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| || | ||||||||| ||| | |||||||| ||| |||||||| |||| || |
|
|
| T |
44244857 |
tgtaagaattgtgagtttcttgaagaggttaggatgttgaaatgctca-ctctaactcatgttggcattgcttctgccatcaacgagagaccaacttcga |
44244759 |
T |
|
| Q |
372 |
agtctctatccgttagatggagaacaaatggaagccatgacaacattggttcaaactt |
429 |
Q |
| |
|
||||||| ||||||| ||||||||||| ||||||||||| ||||| |||| |
|
|
| T |
44244758 |
agtctct---------atggagatcaaatggaagctatgacaacattagttcacactt |
44244710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 17642941 - 17642996
Alignment:
| Q |
8 |
ttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaacat |
63 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||| ||||||| ||||||| |||| |
|
|
| T |
17642941 |
ttacaagctttctcccagaatattacaactttgacctctctcacttgttcccacat |
17642996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 17635662 - 17635712
Alignment:
| Q |
8 |
ttacgagctttctcccaaaatattacaactttgacttctctcatttgttcc |
58 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||| ||||||| |
|
|
| T |
17635662 |
ttacgagctttctcccggaatattacaactttgacctctctcacttgttcc |
17635712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 32152013 - 32151969
Alignment:
| Q |
13 |
agctttctcccaaaatattacaactttgacttctctcatttgttc |
57 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||| |||||| |
|
|
| T |
32152013 |
agctttctcccaaaacattacaactttgacctctctcacttgttc |
32151969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 21236201 - 21236154
Alignment:
| Q |
11 |
cgagctttctcccaaaatattacaactttgacttctctcatttgttcc |
58 |
Q |
| |
|
||||| ||||||||||||| |||||||||||| ||||||| ||||||| |
|
|
| T |
21236201 |
cgagcattctcccaaaatactacaactttgacatctctcaattgttcc |
21236154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 10615763 - 10615708
Alignment:
| Q |
8 |
ttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaacat |
63 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||| ||||||| |||| |
|
|
| T |
10615763 |
ttacgagctttctcccaaaagattacaactttgacctctctcacttgttcccacat |
10615708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 6417142 - 6417087
Alignment:
| Q |
8 |
ttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaacat |
63 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||| ||||||| ||||||| |||| |
|
|
| T |
6417142 |
ttacgagctttctcccaaaagaatacaactttgacctctctcacttgttcccacat |
6417087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 585 - 625
Target Start/End: Complemental strand, 6436798 - 6436757
Alignment:
| Q |
585 |
actctttgttatccaagtgtc-gtatacaacatttggatctt |
625 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6436798 |
actctttgttatccaagtgtcagtatacaacatttggatctt |
6436757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 7132352 - 7132300
Alignment:
| Q |
11 |
cgagctttctcccaaaatattacaactttgacttctctcatttgttccaacat |
63 |
Q |
| |
|
||||||||||||||||| |||||||||||| | |||||| |||||||||||| |
|
|
| T |
7132352 |
cgagctttctcccaaaacattacaactttggcatctctcgattgttccaacat |
7132300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 6395582 - 6395539
Alignment:
| Q |
13 |
agctttctcccaaaatattacaactttgacttctctcatttgtt |
56 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
6395582 |
agctctctcccaaaatattacaactttgacctctctcagttgtt |
6395539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 7135275 - 7135224
Alignment:
| Q |
11 |
cgagctttctcccaaaatattacaactttgacttctctcatttgttccaaca |
62 |
Q |
| |
|
||||||||||||||||| |||||||||||| | |||||| ||||||||||| |
|
|
| T |
7135275 |
cgagctttctcccaaaacattacaactttggcatctctcgattgttccaaca |
7135224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 7138198 - 7138147
Alignment:
| Q |
11 |
cgagctttctcccaaaatattacaactttgacttctctcatttgttccaaca |
62 |
Q |
| |
|
||||||||||||||||| |||||||||||| | |||||| ||||||||||| |
|
|
| T |
7138198 |
cgagctttctcccaaaacattacaactttggcatctctcgattgttccaaca |
7138147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 577 - 625
Target Start/End: Complemental strand, 6403458 - 6403407
Alignment:
| Q |
577 |
tggaatatactctttgttatccaagtgt---cgtatacaacatttggatctt |
625 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
6403458 |
tggaatatactctctgttatccaagtgtagatgtatacaacatttggatctt |
6403407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 6423952 - 6423907
Alignment:
| Q |
11 |
cgagctttctcccaaaatattacaactttgacttctctcatttgtt |
56 |
Q |
| |
|
||||||||||||||||| || ||||||||||| ||||||| ||||| |
|
|
| T |
6423952 |
cgagctttctcccaaaacataacaactttgacctctctcacttgtt |
6423907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 577 - 625
Target Start/End: Original strand, 6594125 - 6594176
Alignment:
| Q |
577 |
tggaatatactctttgttatccaagtgtc---gtatacaacatttggatctt |
625 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
6594125 |
tggaatgtactctttgttatccaagtgtcgatgtatacaacatttgaatctt |
6594176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 6427223 - 6427183
Alignment:
| Q |
16 |
tttctcccaaaatattacaactttgacttctctcatttgtt |
56 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||| ||||| |
|
|
| T |
6427223 |
tttctcccaaaatattacaactttgacctttctcacttgtt |
6427183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 11 - 39
Target Start/End: Complemental strand, 9412171 - 9412143
Alignment:
| Q |
11 |
cgagctttctcccaaaatattacaacttt |
39 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
9412171 |
cgagctttctcccaaaatattacaacttt |
9412143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 7555245 - 7555196
Alignment:
| Q |
11 |
cgagctttctcccaaaatattacaactttgacttctctcatttgttccaa |
60 |
Q |
| |
|
||||||||||||||||||||||||||||| || || |||| ||||||||| |
|
|
| T |
7555245 |
cgagctttctcccaaaatattacaactttaacctcactcacttgttccaa |
7555196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 629
Target Start/End: Complemental strand, 17352303 - 17352166
Alignment:
| Q |
495 |
atgaattgcttttttctattgcaatgggaggtcttcctttgagaagacttgtcctccaaaattgcaccggctataattatgttggaatatactctttgtt |
594 |
Q |
| |
|
|||||||||| | |||||||||| || ||| ||||||| || ||||||||||| ||| ||| ||| ||||| | ||||| ||||| | |||||||| |
|
|
| T |
17352303 |
atgaattgctctcctctattgcaaaggagggttttcctttcaggagacttgtccttcaatattccactggctacagttatgctggaactttttctttgtt |
17352204 |
T |
|
| Q |
595 |
atccaagtg---tcgtatacaacatttggatcttcaaa |
629 |
Q |
| |
|
||||||||| ||||| ||||||| ||||||||||| |
|
|
| T |
17352203 |
atccaagtgccaacgtatccaacattaggatcttcaaa |
17352166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 9581737 - 9581685
Alignment:
| Q |
11 |
cgagctttctcccaaaatattacaactttgacttctctcatttgttccaacat |
63 |
Q |
| |
|
|||||||||||| ||| |||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
9581737 |
cgagctttctccgtaaagattacaacgttgacatctctcatttgttcgaacat |
9581685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 13469655 - 13469714
Alignment:
| Q |
8 |
ttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaacattgct |
67 |
Q |
| |
|
|||||||||||||||||||| | |||||| |||| ||||||| ||||||| |||||||| |
|
|
| T |
13469655 |
ttacgagctttctcccaaaagaatacaacgctgacctctctcacttgttcccacattgct |
13469714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 20477455 - 20477496
Alignment:
| Q |
17 |
ttctcccaaaatattacaactttgacttctctcatttgttcc |
58 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||| ||||||| |
|
|
| T |
20477455 |
ttctcccaaaatattaaaactttgacctctctcagttgttcc |
20477496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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