View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0151-INSERTION3 (Length: 682)

Name: NF0151-INSERTION3
Description: NF0151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0151-INSERTION3
NF0151-INSERTION3
[»] chr5 (10 HSPs)
chr5 (8-593)||(20321696-20322293)
chr5 (135-360)||(15450989-15451214)
chr5 (8-106)||(20326410-20326508)
chr5 (220-345)||(30997676-30997801)
chr5 (217-417)||(9281475-9281675)
chr5 (290-385)||(9844876-9844971)
chr5 (449-534)||(30997902-30997986)
chr5 (135-189)||(36731139-36731193)
chr5 (135-188)||(23883276-23883329)
chr5 (139-211)||(18482408-18482480)
[»] chr6 (6 HSPs)
chr6 (8-256)||(5918474-5918722)
chr6 (8-138)||(5922161-5922291)
chr6 (139-353)||(14817107-14817321)
chr6 (449-540)||(14618241-14618332)
chr6 (250-399)||(34069034-34069183)
chr6 (484-543)||(31962340-31962399)
[»] chr1 (7 HSPs)
chr1 (45-590)||(32610395-32610958)
chr1 (135-558)||(52779781-52780201)
chr1 (227-353)||(2361866-2361992)
chr1 (305-385)||(40336378-40336458)
chr1 (135-189)||(37736604-37736658)
chr1 (290-384)||(47705286-47705380)
chr1 (135-189)||(9801604-9801658)
[»] chr3 (11 HSPs)
chr3 (52-332)||(10545464-10545734)
chr3 (135-537)||(44666269-44666668)
chr3 (135-363)||(12298693-12298921)
chr3 (139-348)||(8838342-8838551)
chr3 (135-363)||(19584470-19584698)
chr3 (470-540)||(19584802-19584872)
chr3 (470-558)||(12298501-12298589)
chr3 (176-259)||(5686772-5686855)
chr3 (176-318)||(5665331-5665473)
chr3 (328-374)||(10560346-10560392)
chr3 (337-405)||(18962714-18962782)
[»] scaffold0329 (1 HSPs)
scaffold0329 (135-558)||(13110-13530)
[»] chr4 (8 HSPs)
chr4 (135-351)||(22645667-22645883)
chr4 (139-353)||(10869191-10869405)
chr4 (139-353)||(10655046-10655260)
chr4 (449-544)||(17131712-17131807)
chr4 (449-544)||(35089284-35089379)
chr4 (139-207)||(14041274-14041342)
chr4 (139-207)||(19799186-19799254)
chr4 (455-540)||(10869007-10869092)
[»] chr8 (5 HSPs)
chr8 (455-571)||(44231100-44231216)
chr8 (139-354)||(19996466-19996681)
chr8 (136-267)||(15885162-15885293)
chr8 (139-354)||(15760630-15760845)
chr8 (135-189)||(18550377-18550431)
[»] chr2 (5 HSPs)
chr2 (449-543)||(27034327-27034421)
chr2 (135-189)||(23683081-23683135)
chr2 (140-201)||(19913978-19914039)
chr2 (305-348)||(28154382-28154425)
chr2 (142-198)||(13486828-13486884)
[»] scaffold0655 (1 HSPs)
scaffold0655 (320-385)||(21-86)
[»] chr7 (3 HSPs)
chr7 (140-385)||(8854506-8854751)
chr7 (290-384)||(38845207-38845301)
chr7 (139-207)||(1528607-1528675)


Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 8 - 593
Target Start/End: Original strand, 20321696 - 20322293
Alignment:
Q  8 gaatgaagatacaaggtgtttatatacaagagctagcgtacatgataagctatggtagtaatgaaacactatagtgtaactaaaacactctaaactcaag 107  Q
    ||||| || |||||| ||||| |||||||||||||||||||||||||||||||| ||| |  ||||||||||||| |||||||||||||||||||||||     
T  20321696 gaatgtagttacaagatgtttgtatacaagagctagcgtacatgataagctatgatagcagagaaacactatagtataactaaaacactctaaactcaat 20321795  T
Q  108 t---------------tatttcatccttatgtgtatcatccgatagccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaag 192  Q
    |               ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| || |||||||| |||    
T  20321796 tacttgaggtacaaattatatcatccttatgtgtatcatccaatagccccccacaagctggaggttggtaaatgtctaacaagctcaacttggatagaag 20321895  T
Q  193 aagattaaagggttgaggatgaagagcttttgtgaagaaatcagcaacctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttt 292  Q
    ||||||||| |||||||||||||||| ||| ||||| |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||| |||    
T  20321896 aagattaaaaggttgaggatgaagagatttggtgaaaaaatcagccacctgctctttagaagaaacaggaagaagcttgagtatgccagaatgtagcttt 20321995  T
Q  293 tctctcactatgtggcaatcaatctccaagtgtttggtgcattcatgaaaaacagggttagctgctatatgtaaaccgctttgattgtcacagaagagta 392  Q
    |||||||||||||| |||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||| | | ||||||||||||||||| ||||    
T  20321996 tctctcactatgtgacaatcaatttccaagtgtttagtgcgttcatgaaaaacagggttagctgctatatgtagagcactttgattgtcacagaatagta 20322095  T
Q  393 caggaagcttgatgcaggtaacatggagatcctgaagaagataaatcaaccattaatgaagctcacaagttgctgaagctaaagcacgatactcaacttc 492  Q
    ||||||| ||  |||| |||||||||||||| |||||||| ||||||||||||   |||||||||||||||||||||||||||||||| |||||| ||||    
T  20322096 caggaagtttagtgcaagtaacatggagatcttgaagaaggtaaatcaaccat---tgaagctcacaagttgctgaagctaaagcacggtactcagcttc 20322192  T
Q  493 agaagaggacctagaaacagttacttgtttctttgttctccatgaaatgagataattctctaagaagatacactgaccactgatggatctcctagtatca 592  Q
    |||||| || ||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||| | ||| |||||||| ||||||||||||||||||    
T  20322193 agaagaagatctagaaacagtcacttgtttctttgttctccatgaaatgagagaattccctaagaaaaaacattgaccactaatggatctcctagtatca 20322292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 135 - 360
Target Start/End: Complemental strand, 15451214 - 15450989
Alignment:
Q  135 atagccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggttgaggatgaagagcttttgtgaagaaatc 234  Q
    ||||||||||||||| ||| ||||| || ||||||| |||||||||||||||||| |||| |  ||||||||||||  | |||| ||| |||||||||||    
T  15451214 atagccccccacaagatggtggttgatagatatctatcaagcccagcttggataacagaataccaaagggttgagggaggagaggtttagtgaagaaatc 15451115  T
Q  235 agcaacctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcat 334  Q
     || | |   |||||||| || ||||||||||| ||||| ||||||| ||| || || |||||||||||||| |||||||| |||||||| ||||| | |    
T  15451114 tgccaaccaatcttgagatgagacaggaagaagtttgagaatgccagcatgaagcttctctctcactatgtgacaatcaatgtccaagtgcttggttctt 15451015  T
Q  335 tcatgaaaaacagggttagctgctat 360  Q
    ||||||||||| || ||||| |||||    
T  15451014 tcatgaaaaactggattagcagctat 15450989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 20326410 - 20326508
Alignment:
Q  8 gaatgaagatacaaggtgtttatatacaagagctagcgtacatgataagctatggtagtaatgaaacactatagtgtaactaaaacactctaaactcaa 106  Q
    ||||| || |||||| |||||||||||||||||||||||||||||||||||||| ||| |  ||||||||||||| |||||||||||||||||||||||    
T  20326410 gaatgtagttacaagatgtttatatacaagagctagcgtacatgataagctatgatagcagagaaacactatagtataactaaaacactctaaactcaa 20326508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 220 - 345
Target Start/End: Original strand, 30997676 - 30997801
Alignment:
Q  220 ttttgtgaagaaatcagcaacctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctcc 319  Q
    ||||||||||||||||||||  || ||||||||||||||||| | |||||| |  ||||||   || |||||||||||||| |  || ||||||||||||    
T  30997676 ttttgtgaagaaatcagcaatttgatcttgagaagaaacagggataagcttcatgatgccaacttgaagtttttctctcaccagatgacaatcaatctcc 30997775  T
Q  320 aagtgtttggtgcattcatgaaaaac 345  Q
    || || || |||| ||||||||||||    
T  30997776 aaatgctttgtgcgttcatgaaaaac 30997801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 217 - 417
Target Start/End: Complemental strand, 9281675 - 9281475
Alignment:
Q  217 agcttttgtgaagaaatcagcaacctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatc 316  Q
    |||||||||||| |||||||| || || ||||| |||||||| ||||| || ||||| |||||||| || || |||||||| |  |  || |||||||||    
T  9281675 agcttttgtgaaaaaatcagctacttggtcttgtgaagaaactggaagcagtttgagcatgccagattgcagcttttctctaatcagatgacaatcaatc 9281576  T
Q  317 tccaagtgtttggtgcattcatgaaaaacagggttagctgctatatgtaaaccgctttgattgtcacagaagagtacaggaagcttgatgcaggtaacat 416  Q
    || || || ||||  |  |||||||||||||| ||||  || ||||||| | | ||||||||||||||  |||| ||||| ||||||  ||||| |||||    
T  9281575 tctaattgcttgggcctctcatgaaaaacaggattagaagcaatatgtatagcactttgattgtcacaatagagcacaggtagcttggagcaggaaacat 9281476  T
Q  417 g 417  Q
    |    
T  9281475 g 9281475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 290 - 385
Target Start/End: Original strand, 9844876 - 9844971
Alignment:
Q  290 ttttctctcactatgtggcaatcaatctccaagtgtttggtgcattcatgaaaaacagggttagctgctatatgtaaaccgctttgattgtcacag 385  Q
    |||||||| || || || ||||| || || |||||||| |||| |||||| || |||||||||||||||||||| | | |||||||||||||||||    
T  9844876 ttttctctaacaatatgacaatctatttctaagtgttttgtgcgttcatggaacacagggttagctgctatatgaagagcgctttgattgtcacag 9844971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 449 - 534
Target Start/End: Original strand, 30997902 - 30997986
Alignment:
Q  449 tgaagctcacaagttgctgaagctaaagcacgatactcaacttcagaagaggacctagaaacagttacttgtttctttgttctcca 534  Q
    |||||||||||||| | |||||||| |||  |||||||||||||||| |||||||| |||||||| | ||| |||||||| |||||    
T  30997902 tgaagctcacaagtag-tgaagctagagcctgatactcaacttcagatgaggacctggaaacagtgatttgcttctttgtcctcca 30997986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 36731139 - 36731193
Alignment:
Q  135 atagccccccacaagctggaggttggtaaatatctaacaagcccagcttggataa 189  Q
    |||||| |||||||| |||||||||||||||||||| ||| |||| |||||||||    
T  36731139 atagcctcccacaagatggaggttggtaaatatctaccaatcccaacttggataa 36731193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 23883276 - 23883329
Alignment:
Q  135 atagccccccacaagctggaggttggtaaatatctaacaagcccagcttggata 188  Q
    |||||| |||||||| |||||||||||| ||||||| ||| |||| ||||||||    
T  23883276 atagcctcccacaaggtggaggttggtagatatctaccaatcccaacttggata 23883329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 18482408 - 18482480
Alignment:
Q  139 ccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggttgagga 211  Q
    ||||||||||| |||||| ||||| |||| |||||  |||| |||||||| ||| ||||| || |||||||||    
T  18482408 ccccccacaagttggaggatggtagatatataacatccccaacttggatagaagtagattgaaaggttgagga 18482480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 245; Significance: 1e-135; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 8 - 256
Target Start/End: Original strand, 5918474 - 5918722
Alignment:
Q  8 gaatgaagatacaaggtgtttatatacaagagctagcgtacatgataagctatggtagtaatgaaacactatagtgtaactaaaacactctaaactcaag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5918474 gaatgaagatacaaggtgtttatatacaagagctagcgtacatgataagctatggtagtaatgaaacactatagtgtaactaaaacactctaaactcaag 5918573  T
Q  108 ttatttcatccttatgtgtatcatccgatagccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggttg 207  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5918574 ttatttcatccttatgtgtatcatccaatagccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggttg 5918673  T
Q  208 aggatgaagagcttttgtgaagaaatcagcaacctgttcttgagaagaa 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5918674 aggatgaagagcttttgtgaagaaatcagcaacctgttcttgagaagaa 5918722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 5922161 - 5922291
Alignment:
Q  8 gaatgaagatacaaggtgtttatatacaagagctagcgtacatgataagctatggtagtaatgaaacactatagtgtaactaaaacactctaaactcaag 107  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5922161 gaatgaagatacaaggtatttatatacaagagctagcgtgcatgataatctatggtagtaatgaaacactatagtgtaactaaaacactctaaactcaaa 5922260  T
Q  108 ttatttcatccttatgtgtatcatccgatag 138  Q
    |||||||||||||||||||||||||| ||||    
T  5922261 ttatttcatccttatgtgtatcatccaatag 5922291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 139 - 353
Target Start/End: Complemental strand, 14817321 - 14817107
Alignment:
Q  139 ccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggttgaggatgaagagcttttgtgaagaaatcagca 238  Q
    ||||||||||| ||||| ||| ||||| | || ||| |||| |||||||| |||||  ||||| |  | |||| | | ||| || || |||||||||||     
T  14817321 ccccccacaaggtggagattgataaatgtttatcaaacccaacttggatagaagaatgttaaaagtcttaggaagcaaagccttggtaaagaaatcagct 14817222  T
Q  239 acctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcattcat 338  Q
    || || |||||||||||||||||||| | |||||| || |||   ||||  |||||||| | || ||| || ||||| ||||||||||| ||||  ||||    
T  14817221 acttggtcttgagaagaaacaggaagcaacttgagaatcccactttgtaacttttctctaattaagtgacagtcaatttccaagtgtttagtgcgctcat 14817122  T
Q  339 gaaaaacagggttag 353  Q
    |||||||||||||||    
T  14817121 gaaaaacagggttag 14817107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 449 - 540
Target Start/End: Complemental strand, 14618332 - 14618241
Alignment:
Q  449 tgaagctcacaagttgctgaagctaaagcacgatactcaacttcagaagaggacctagaaacagttacttgtttctttgttctccatgaaat 540  Q
    ||||| ||||||||||| | | | ||||| | ||| || ||||||||||| || ||||||||| ||| ||||||||| ||||||||||||||    
T  14618332 tgaagttcacaagttgcggcacccaaagctctatattctacttcagaagaagatctagaaacaattaattgtttcttggttctccatgaaat 14618241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 250 - 399
Target Start/End: Complemental strand, 34069183 - 34069034
Alignment:
Q  250 agaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcattcatgaaaaacaggg 349  Q
    |||||||||||| |||||||| | ||| || |  |||||||||||||| || | ||| || |||||||| | ||| ||||| | ||||||||| || |||    
T  34069183 agaagaaacagggagaagcttcattattcctgcttgtagtttttctctaaccaagtgacagtcaatctcaaggtgcttggttctttcatgaaagactggg 34069084  T
Q  350 ttagctgctatatgtaaaccgctttgattgtcacagaagagtacaggaag 399  Q
    |||||||| || |||||  | || || ||||||||| | || ||||||||    
T  34069083 ttagctgcaatgtgtaaggcactctggttgtcacagtaaagcacaggaag 34069034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 484 - 543
Target Start/End: Complemental strand, 31962399 - 31962340
Alignment:
Q  484 ctcaacttcagaagaggacctagaaacagttacttgtttctttgttctccatgaaatgag 543  Q
    |||||||||  | ||||| ||||||||||||| ||||||||| |||||||| ||||||||    
T  31962399 ctcaacttctaatgaggatctagaaacagttaattgtttcttagttctccaagaaatgag 31962340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 45 - 590
Target Start/End: Original strand, 32610395 - 32610958
Alignment:
Q  45 gtacatgataagctatggtagtaatgaaacactatagtgtaactaaaacactctaa--------actcaagttatttcatccttatgtgtatcatccgat 136  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||| |||| |         |  ||||||||||||||||||||||||| |||| ||    
T  32610395 gtacatgataagctattgtagtaatgaaacactatagtgcaactaaaa-actcaattacatgagatacaagttatttcatccttatgtgtattatccaat 32610493  T
Q  137 agccccccac--------aagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggttgaggatgaagagcttttgtgaa 228  Q
    |||||||| |        ||| ||||||||| || |||||||||||| ||| | ||||||||||||| || || |||||||||||||||||||| |||||    
T  32610494 agccccccccccccccccaagttggaggttgatagatatctaacaagtccaacgtggataaaagaaggttgaaaggttgaggatgaagagctttggtgaa 32610593  T
Q  229 gaaatcagcaacctgttcttg------agaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaag 322  Q
    ||||||| |||| || |||||      ||| |||||| ||||||| ||||||| |||||| ||||| ||||| |||| ||||||||||||||||||||||    
T  32610594 gaaatcaacaacttgctcttgctcttgagaggaaacaagaagaagtttgagtacgccagattgtagcttttccctcaatatgtggcaatcaatctccaag 32610693  T
Q  323 tgtttggtgcattcatgaaaaacagggttagctgctatatgtaaaccgctttgattgtcacagaagagtacaggaagcttgatgcaggtaacatggagat 422  Q
    |||||||||  ||||||||| ||||||||||||||||| |||||| |||||||||||||||| ||||||| ||||||  || |||| | |||| |||| |    
T  32610694 tgtttggtgtgttcatgaaatacagggttagctgctatgtgtaaaacgctttgattgtcacaaaagagtataggaagtctggtgcaagaaacaaggaggt 32610793  T
Q  423 cctgaagaagataaatcaaccattaatgaagctcacaagttgctgaagctaaagcacgatactcaacttcagaagaggacctagaaacagttacttgttt 522  Q
    |||||||||| ||||||| ||||   ||||||| |||||| || ||||||| |||| |||||||| ||||||||||||| ||||||| ||| ||||||||    
T  32610794 cctgaagaaggtaaatcagccat---tgaagcttacaagtggccgaagctagagcatgatactcagcttcagaagaggatctagaaatagtcacttgttt 32610890  T
Q  523 ctttgttctccatgaaatgagataattctctaagaagatacactgaccactgatggatctcctagtat 590  Q
    |||||||||||||||||| | | | ||| ||||||||| |||||||||||||||||||||||||||||    
T  32610891 ctttgttctccatgaaattaaagagttccctaagaagaaacactgaccactgatggatctcctagtat 32610958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 135 - 558
Target Start/End: Complemental strand, 52780201 - 52779781
Alignment:
Q  135 atagccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggttgaggatgaagagcttttgtgaagaaatc 234  Q
    ||||||||||||||| ||||||||||||||| | || ||| |||| ||||||||||||||  || || |||| |||| | | |||||| || || |||||    
T  52780201 atagccccccacaagatggaggttggtaaatgtttatcaatcccatcttggataaaagaatgttgaaaggtttaggaagcaaagctttagtaaaaaaatc 52780102  T
Q  235 agcaacctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcat 334  Q
    ||| || || |||||||| ||||| || || |  ||||| ||||| |  ||||  |||||||| ||||| ||||||||||| ||||| |||||||||| |    
T  52780101 agctacttgatcttgagatgaaactgggagcaatttgaggatgcctgcttgtaccttttctctgactatatggcaatcaatttccaaatgtttggtgcgt 52780002  T
Q  335 tcatgaaaaacagggttagctgctatatgtaaaccgctttgattgtcacagaagagtacaggaagcttgatgcaggtaacatggagatcctgaagaagat 434  Q
    |||||||| || || ||||| |||||||| |   | |||||||| |||||| | || ||||| || ||   ||| | ||  ||||  |||||||| || |    
T  52780001 tcatgaaagaccggattagcagctatatggagggcactttgattatcacagtaaagaacaggtagtttagggcaagaaatgtggatgtcctgaagcaggt 52779902  T
Q  435 aaatcaaccattaatgaagctcacaagttgctgaagctaaagcacgatactcaacttcagaagaggacctagaaacagttacttgtttctttgttctcca 534  Q
    | |  | ||||   || || ||||| || || || |||||||| | ||||||| ||||||| || |||||||| ||||| | ||||||||||||||||||    
T  52779901 atagaatccat---tggagttcacatgtggcagatgctaaagccctatactcagcttcagatgaagacctagatacagtgatttgtttctttgttctcca 52779805  T
Q  535 tgaaatgagataattctctaagaa 558  Q
    |||||| ||| ||||  |||||||    
T  52779804 tgaaataagagaattgcctaagaa 52779781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 227 - 353
Target Start/End: Complemental strand, 2361992 - 2361866
Alignment:
Q  227 aagaaatcagcaacctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtt 326  Q
    ||||||||||| || || ||||||||||||||||| || | |||||| || |||   ||||  |||||||| | || ||| || ||||| ||||||||||    
T  2361992 aagaaatcagctacttggtcttgagaagaaacagggagtaacttgagaatcccactttgtaacttttctctaattaagtgacagtcaatttccaagtgtt 2361893  T
Q  327 tggtgcattcatgaaaaacagggttag 353  Q
    | ||||  |||||||||||||||||||    
T  2361892 tagtgcgctcatgaaaaacagggttag 2361866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 305 - 385
Target Start/End: Complemental strand, 40336458 - 40336378
Alignment:
Q  305 tggcaatcaatctccaagtgtttggtgcattcatgaaaaacagggttagctgctatatgtaaaccgctttgattgtcacag 385  Q
    |||||||||||||| |||||||| |||| ||||||||| ||||| ||||| |||||||| |   | |||||||||||||||    
T  40336458 tggcaatcaatctctaagtgttttgtgcgttcatgaaacacaggattagcagctatatgaagtgcactttgattgtcacag 40336378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 37736604 - 37736658
Alignment:
Q  135 atagccccccacaagctggaggttggtaaatatctaacaagcccagcttggataa 189  Q
    |||||| |||||||| |||||||||||||||||||| ||| |||| |||||||||    
T  37736604 atagcctcccacaagatggaggttggtaaatatctaccaatcccaacttggataa 37736658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 384
Target Start/End: Original strand, 47705286 - 47705380
Alignment:
Q  290 ttttctctcactatgtggcaatcaatctccaagtgtttggtgcattcatgaaaaacagggttagctgctatatgtaaaccgctttgattgtcaca 384  Q
    |||||||| || ||||| ||||||||||| || || ||||| | ||||||||| || || ||||||| |||||||||| | |||||||| |||||    
T  47705286 ttttctctgacaatgtgacaatcaatctctaaatgcttggttctttcatgaaagactggattagctgatatatgtaaagcactttgattatcaca 47705380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 9801604 - 9801658
Alignment:
Q  135 atagccccccacaagctggaggttggtaaatatctaacaagcccagcttggataa 189  Q
    |||||| |||||||| |||||||||||||||||||| ||| || | |||||||||    
T  9801604 atagcctcccacaagttggaggttggtaaatatctaccaatcctaacttggataa 9801658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 140; Significance: 6e-73; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 52 - 332
Target Start/End: Original strand, 10545464 - 10545734
Alignment:
Q  52 ataagctatggtagtaatgaaacactatagtgtaactaaaacactctaaactcaagttatttcatccttatgtgtatcatccgatagccccccacaagct 151  Q
    ||||||||| || ||||||||||||||| ||  |||||||||||||||||||||| |||       |||| ||  ||||||| ||||||||| |||||||    
T  10545464 ataagctattgtggtaatgaaacactattgtacaactaaaacactctaaactcaa-tta-------cttaggt--atcatccaatagccccctacaagct 10545553  T
Q  152 ggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggttgaggatgaagagcttttgtgaagaaatcagcaacctgttcttgag 251  Q
    |||||||| || |||||||||||||||||||| ||||||||||| || || |||||||||||||||||||| |||||||||||| ||||||| |||| ||    
T  10545554 ggaggttgatagatatctaacaagcccagcttagataaaagaaggttgaaaggttgaggatgaagagctttggtgaagaaatcaacaacctgctcttaag 10545653  T
Q  252 aagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgc 332  Q
    |||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||||||||| ||||    
T  10545654 aagaaacatgaagaagcttgagtatgccagaatgtagcttttccctcactatgtggaaatcaatttccaagtgtttagtgc 10545734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 135 - 537
Target Start/End: Original strand, 44666269 - 44666668
Alignment:
Q  135 atagccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggttgaggatgaagagcttttgtgaagaaatc 234  Q
    ||||||||||||||| | |||||||||| | ||||| ||| || | ||||||||||||||   |||| || |||||| | |  |  || ||||| |||||    
T  44666269 atagccccccacaagttagaggttggtacaaatctagcaaccctaacttggataaaagaatgctaaaaggctgaggaagcaaggacttagtgaaaaaatc 44666368  T
Q  235 agcaacctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcat 334  Q
    |||||  || ||||||||||||||||| ||||| || |  |||||||  || ||||||||||| ||||  ||||||||||| ||||| || || || | |    
T  44666369 agcaagttgatcttgagaagaaacaggcagaagtttcaaaatgccagcttgaagtttttctctgactagatggcaatcaatttccaaatgcttagtacgt 44666468  T
Q  335 tcatgaaaaacagggttagctgctatatgtaaaccgctttgattgtcacagaagagtacaggaagcttgatgcaggtaacatggagatcctgaagaagat 434  Q
    |||||||||| ||| ||||| || ||  | | | | |||||||| ||||| || |  | ||||||||||   ||   || ||| ||||||| ||| ||||    
T  44666469 tcatgaaaaataggattagcagcaatggggagagcactttgattatcacaaaataacataggaagcttggaacattgaatatgaagatccttaagcagat 44666568  T
Q  435 aaatcaaccattaatgaagctcacaagttgctgaagctaaagcacgatactcaacttcagaagaggacctagaaacagttacttgtttctttgttctcca 534  Q
    | |  | |||||   ||||||||||||| |||||||||||||||||||||||| ||||||| |  || ||||| |||||||  |||||||||||||||||    
T  44666569 agagaatccatt---gaagctcacaagtggctgaagctaaagcacgatactcagcttcagagggtgatctagatacagttatatgtttctttgttctcca 44666665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 135 - 363
Target Start/End: Complemental strand, 12298921 - 12298693
Alignment:
Q  135 atagccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggttgaggatgaagagcttttgtgaagaaatc 234  Q
    ||||||||||||||| ||||||||||||||| | || ||| |||| ||||||||||||||  || || |||| |||| | | |||||| || || |||||    
T  12298921 atagccccccacaagatggaggttggtaaatttttatcaatcccatcttggataaaagaatgttgaatggtttaggaagcaaagctttagtaaaaaaatc 12298822  T
Q  235 agcaacctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcat 334  Q
    ||| || || |||||||| ||||| || || |  ||||| ||||| |  ||||  |||||||| ||||| ||||||||||| ||||| |||||||||| |    
T  12298821 agctacttgatcttgagaggaaactgggagcaatttgaggatgcctgcttgtaccttttctctgactatatggcaatcaatttccaaatgtttggtgcgt 12298722  T
Q  335 tcatgaaaaacagggttagctgctatatg 363  Q
    |||||||| || || ||||| ||||||||    
T  12298721 tcatgaaagaccggattagcagctatatg 12298693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 139 - 348
Target Start/End: Complemental strand, 8838551 - 8838342
Alignment:
Q  139 ccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggttgaggatgaagagcttttgtgaagaaatcagca 238  Q
    ||||||||||| |||||| ||||||||||||||||  |||| |||||| |  |  ||  ||||||||||||| |  | ||| ||||| ||||||||||||    
T  8838551 ccccccacaagttggagggtggtaaatatctaacatccccaacttggaaagcaagaggctaaagggttgaggctataaagcctttgtaaagaaatcagca 8838452  T
Q  239 acctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcattcat 338  Q
    |  || || ||||  | ||| |||||||| ||||  ||||| |  ||||| ||||| ||||| ||||| ||||||||||| |  |||||||| | |||||    
T  8838451 atttgatcatgagtggtaactggaagaagtttgaagatgcctgcttgtagcttttccctcacaatgtgacaatcaatctcaagatgtttggttctttcat 8838352  T
Q  339 gaaaaacagg 348  Q
    ||||||||||    
T  8838351 gaaaaacagg 8838342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 135 - 363
Target Start/End: Original strand, 19584470 - 19584698
Alignment:
Q  135 atagccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggttgaggatgaagagcttttgtgaagaaatc 234  Q
    ||||||||||| ||| ||||||||||||||| | || ||| |||| |||||| |||||||  || || |||| |||| | | | |||| ||||| |||||    
T  19584470 atagccccccagaagatggaggttggtaaatgtttatcaatcccatcttggacaaaagaatgttgaatggtttaggaagcaaacctttagtgaaaaaatc 19584569  T
Q  235 agcaacctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcat 334  Q
     |  || || |||||||| ||||| || || |  ||||| ||||| |  || |  |||||||| ||||| ||||||||||| ||||| |||||||||| |    
T  19584570 tgttacttgatcttgagaggaaactgggagcaatttgaggatgcctgcttgaaccttttctctgactatatggcaatcaatttccaaatgtttggtgcgt 19584669  T
Q  335 tcatgaaaaacagggttagctgctatatg 363  Q
    |||||||| || || ||||| ||||||||    
T  19584670 tcatgaaagaccggattagcagctatatg 19584698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 470 - 540
Target Start/End: Original strand, 19584802 - 19584872
Alignment:
Q  470 gctaaagcacgatactcaacttcagaagaggacctagaaacagttacttgtttctttgttctccatgaaat 540  Q
    |||||||| | ||||||| ||||||| || |||||||| ||||| | ||||||||||||||||||||||||    
T  19584802 gctaaagccctatactcagcttcagatgaagacctagatacagtgatttgtttctttgttctccatgaaat 19584872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 470 - 558
Target Start/End: Complemental strand, 12298589 - 12298501
Alignment:
Q  470 gctaaagcacgatactcaacttcagaagaggacctagaaacagttacttgtttctttgttctccatgaaatgagataattctctaagaa 558  Q
    |||||||| | ||||||| ||||||| || |||||||| ||||| | ||||||||| |||||||||||||| ||| ||||  |||||||    
T  12298589 gctaaagccctatactcagcttcagatgaagacctagatacagtgatttgtttcttcgttctccatgaaataagagaattgcctaagaa 12298501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 176 - 259
Target Start/End: Original strand, 5686772 - 5686855
Alignment:
Q  176 cccagcttggataaaagaagattaaagggttgaggatgaagagcttttgtgaagaaatcagcaacctgttcttgagaagaaaca 259  Q
    |||| ||| ||||| || ||||| || |||||||||||||||||||||||||||||||  || | ||| |||||||||| ||||    
T  5686772 cccaacttagataataggagattgaaaggttgaggatgaagagcttttgtgaagaaattggccagctgatcttgagaagtaaca 5686855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 318
Target Start/End: Original strand, 5665331 - 5665473
Alignment:
Q  176 cccagcttggataaaagaagattaaagggttgaggatgaagagcttttgtgaagaaatcagcaacctgttcttgagaagaaacaggaagaagcttgagta 275  Q
    |||| ||| ||||| || ||||| || |||||||||||||||||||||||||||||||  || |  || |||||||||| |||| |||  || ||||| |    
T  5665331 cccaacttagataataggagattgaaaggttgaggatgaagagcttttgtgaagaaattggccagttgatcttgagaagtaacaagaaagagtttgagaa 5665430  T
Q  276 tgccagaatgtagtttttctctcactatgtggcaatcaatctc 318  Q
    |||| |  || || || ||||| ||||||||| | ||||||||    
T  5665431 tgcctggctgaagcttctctctgactatgtggtagtcaatctc 5665473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 328 - 374
Target Start/End: Original strand, 10560346 - 10560392
Alignment:
Q  328 ggtgcattcatgaaaaacagggttagctgctatatgtaaaccgcttt 374  Q
    ||||| ||||||||| ||| |||||||||||||||||||| ||||||    
T  10560346 ggtgcgttcatgaaatacatggttagctgctatatgtaaagcgcttt 10560392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 337 - 405
Target Start/End: Original strand, 18962714 - 18962782
Alignment:
Q  337 atgaaaaacagggttagctgctatatgtaaaccgctttgattgtcacagaagagtacaggaagcttgat 405  Q
    |||||| ||||||||||| ||||| |||||| | || |||||||||||  | || ||||||||||||||    
T  18962714 atgaaatacagggttagcagctatgtgtaaagcactctgattgtcacaataaaggacaggaagcttgat 18962782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 66; Significance: 8e-29; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 135 - 558
Target Start/End: Complemental strand, 13530 - 13110
Alignment:
Q  135 atagccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggttgaggatgaagagcttttgtgaagaaatc 234  Q
    ||||||||||||||| ||||||||||||||| | || ||| |||| ||||||||||||||  || || |||| |||| | | |||||| || || |||||    
T  13530 atagccccccacaagatggaggttggtaaatgtttatcaatcccatcttggataaaagaatgttgaatggtttaggaagcaaagctttagtaaaaaaatc 13431  T
Q  235 agcaacctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcat 334  Q
    ||| || || |||||||| ||||| || || |  ||||| ||||| |  ||||  |||||||| ||||| ||||||||||| ||||| |||||||||| |    
T  13430 agctacttgatcttgagatgaaactgggagcaatttgaggatgcctgcttgtaccttttctctgactatatggcaatcaatttccaaatgtttggtgcgt 13331  T
Q  335 tcatgaaaaacagggttagctgctatatgtaaaccgctttgattgtcacagaagagtacaggaagcttgatgcaggtaacatggagatcctgaagaagat 434  Q
    |||||||| || || ||||| |||||||| |   | |||||||| |||||| | || ||||| || ||    || | ||  ||||  |||||||| || |    
T  13330 tcatgaaagaccggattagcagctatatggagggcactttgattatcacagtaaagaacaggtagtttaggtcaagaaatgtggatgtcctgaagcaggt 13231  T
Q  435 aaatcaaccattaatgaagctcacaagttgctgaagctaaagcacgatactcaacttcagaagaggacctagaaacagttacttgtttctttgttctcca 534  Q
    | |  | ||||   || || ||||| || || || |||||||| | ||||||| ||||||| || |||||||| ||||| | ||||||||||||||||||    
T  13230 atagaatccat---tggagttcacatgtggcagatgctaaagccctatactcagcttcagatgaagacctagatacagtgatttgtttctttgttctcca 13134  T
Q  535 tgaaatgagataattctctaagaa 558  Q
    |||||| ||| ||||  |||||||    
T  13133 tgaaataagagaattgcctaagaa 13110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 8e-26; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 135 - 351
Target Start/End: Complemental strand, 22645883 - 22645667
Alignment:
Q  135 atagccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggttgaggatgaagagcttttgtgaagaaatc 234  Q
    ||||||||||||||| |||| |||| ||||| |||| |||||||| |||||||||||| |||  ||| | ||  ||| ||||||||||||||||||||||    
T  22645883 atagccccccacaagttggacgttgataaatgtctatcaagcccaacttggataaaagcagagaaaatgttttgggaagaagagcttttgtgaagaaatc 22645784  T
Q  235 agcaacctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcat 334  Q
    |||||  || |||||||||||||| || ||||| || || |  ||||  || | ||||||||| || || || || ||||||||||| |||||||| |      
T  22645783 agcaatttgatcttgagaagaaactgggagaagtttcagaacaccagcttgcaatttttctctaacaatatgacagtcaatctccaaatgtttggttctc 22645684  T
Q  335 tcatgaaaaacagggtt 351  Q
    ||||| || ||||||||    
T  22645683 tcatggaagacagggtt 22645667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 139 - 353
Target Start/End: Complemental strand, 10869405 - 10869191
Alignment:
Q  139 ccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggttgaggatgaagagcttttgtgaagaaatcagca 238  Q
    ||||||||||| ||||| ||| ||||| | || ||| |||| |||||||| ||||| ||||||||  | |||| | | ||| || || || ||||||||     
T  10869405 ccccccacaaggtggagattgataaatgtttatcaaacccaacttggatagaagaatattaaaggtcttaggaagcaaagccttggtaaaaaaatcagct 10869306  T
Q  239 acctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcattcat 338  Q
    || || |||||||||||||||||||| | |||||| || |||   ||||  |||||||| | || ||| || ||||| ||||||||||| ||||  ||||    
T  10869305 acttgatcttgagaagaaacaggaagcaacttgagaatcccactttgtaacttttctctgattaagtgacagtcaatttccaagtgtttagtgcgctcat 10869206  T
Q  339 gaaaaacagggttag 353  Q
    |||||||||||||||    
T  10869205 gaaaaacagggttag 10869191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 139 - 353
Target Start/End: Complemental strand, 10655260 - 10655046
Alignment:
Q  139 ccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggttgaggatgaagagcttttgtgaagaaatcagca 238  Q
    ||||||||||| ||||| ||| ||||| | || ||| |||| |||||||| ||||| ||||||||  | |||| | | ||| || || || ||||||||     
T  10655260 ccccccacaaggtggagattgataaatgtttatcaaacccaacttggatagaagaatattaaaggtcttaggaagcaaagccttggtaaaaaaatcagct 10655161  T
Q  239 acctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcattcat 338  Q
    || || |||||||||||||||||||| | |||||| || |||   ||||  |||||||| | || ||| || ||||| ||||||||||| ||||  ||||    
T  10655160 acttgatcttgagaagaaacaggaagcaacttgagaatcccactttgtaacttttctctgattaagtgacagtcaatttccaagtgtttagtgcgctcat 10655061  T
Q  339 gaaaaacagggttag 353  Q
    |||| ||||||||||    
T  10655060 gaaagacagggttag 10655046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 449 - 544
Target Start/End: Complemental strand, 17131807 - 17131712
Alignment:
Q  449 tgaagctcacaagttgctgaagctaaagcacgatactcaacttcagaagaggacctagaaacagttacttgtttctttgttctccatgaaatgaga 544  Q
    ||||| ||||||||||| ||||| |  || | ||||||| ||||||| |||||||| |||||| |   ||||||||||||||||||||||||||||    
T  17131807 tgaagttcacaagttgcagaagccatggccctatactcagcttcagaggaggacctggaaacaataggttgtttctttgttctccatgaaatgaga 17131712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 449 - 544
Target Start/End: Complemental strand, 35089379 - 35089284
Alignment:
Q  449 tgaagctcacaagttgctgaagctaaagcacgatactcaacttcagaagaggacctagaaacagttacttgtttctttgttctccatgaaatgaga 544  Q
    ||||| |||||||| |||||||| |  || | ||||||| |||||||||| || |||||||||||   ||||||||| |||| |||||||||||||    
T  35089379 tgaagttcacaagtggctgaagcaagggctctatactcagcttcagaagatgatctagaaacagtggtttgtttcttggttcgccatgaaatgaga 35089284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 14041342 - 14041274
Alignment:
Q  139 ccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggttg 207  Q
    ||||||||||| |||||||||||| || |||||||| |||| |||||| |  ||||||||||| |||||    
T  14041342 ccccccacaagatggaggttggtagatgtctaacaatcccaacttggaaagtagaagattaaaaggttg 14041274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 19799186 - 19799254
Alignment:
Q  139 ccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggttg 207  Q
    |||||| |||| |||||||||||| ||||||||||| |||| ||||||||| |  |||||||| |||||    
T  19799186 ccccccgcaagttggaggttggtatatatctaacaaccccaacttggataacaagagattaaaaggttg 19799254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 540
Target Start/End: Complemental strand, 10869092 - 10869007
Alignment:
Q  455 tcacaagttgctgaagctaaagcacgatactcaacttcagaagaggacctagaaacagttacttgtttctttgttctccatgaaat 540  Q
    |||||||| |||||||| || || | ||| ||| ||||||| || || |||||||| || | |||||||||||||||||| |||||    
T  10869092 tcacaagtagctgaagccaatgccctatattcagcttcagaggaagatctagaaactgtgatttgtttctttgttctccaagaaat 10869007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 455 - 571
Target Start/End: Complemental strand, 44231216 - 44231100
Alignment:
Q  455 tcacaagttgctgaagctaaagcacgatactcaacttcagaagaggacctagaaacagttacttgtttctttgttctccatgaaatgagataattctcta 554  Q
    ||||||||||||||||||||||| | ||||||| ||||||| || || ||||| |||||   |||||||||||||||||||||||| ||| | ||  |||    
T  44231216 tcacaagttgctgaagctaaagctctatactcagcttcagaggaagatctagacacagtggtttgtttctttgttctccatgaaatcagagagttgccta 44231117  T
Q  555 agaagatacactgacca 571  Q
     ||||| ||||||||||    
T  44231116 tgaagaaacactgacca 44231100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 139 - 354
Target Start/End: Complemental strand, 19996681 - 19996466
Alignment:
Q  139 ccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggttgaggatgaagagcttttgtgaagaaatcagca 238  Q
    ||||||||||| |||||| ||||| ||||||||||  |||| |||||||| ||| | ||| || ||||||||| | |  | |||||| || ||||| ||     
T  19996681 ccccccacaagttggagggtggtatatatctaacatccccaacttggatagaagtaaattgaatggttgaggaagcaatgattttgtaaaaaaatctgct 19996582  T
Q  239 acctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcattcat 338  Q
    || || |||| |||||||| ||||||||| ||||  | | |||  | |||||| || || ||||||||||| || || || | ||||||||||| |||||    
T  19996581 acttgatctttagaagaaataggaagaagtttgaacaagacagtctatagtttctccctgactatgtggcagtctatttcaaggtgtttggtgcgttcat 19996482  T
Q  339 gaaaaacagggttagc 354  Q
    |||| |||||||||||    
T  19996481 gaaagacagggttagc 19996466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 267
Target Start/End: Original strand, 15885162 - 15885293
Alignment:
Q  136 tagccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggttgaggatgaagagcttttgtgaagaaatca 235  Q
    |||||||||||||| | |||||||||| | ||||||||| || | |||||||||||||| ||| |||||||||||| | |  |  || ||||||||||||    
T  15885162 tagccccccacaagttagaggttggtacaaatctaacaaccctaacttggataaaagaatattgaagggttgaggaagcaatgacttagtgaagaaatca 15885261  T
Q  236 gcaacctgttcttgagaagaaacaggaagaag 267  Q
    ||||  || || | |||||||||||| |||||    
T  15885262 gcaagttggtcctaagaagaaacaggcagaag 15885293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 354
Target Start/End: Complemental strand, 15760845 - 15760630
Alignment:
Q  139 ccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggttgaggatgaagagcttttgtgaagaaatcagca 238  Q
    ||||||||||| | |||| ||||| ||||||||||  |||| |||||||| |||  ||||||| ||||||||| | |  | ||||||||| ||||| ||     
T  15760845 ccccccacaagttcgaggatggtagatatctaacattcccaacttggatagaagcggattaaaaggttgaggaagtaaggattttgtgaaaaaatctgcc 15760746  T
Q  239 acctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcattcat 338  Q
    || || |||| |||||||| ||| ||||| ||||  |  ||||  || | ||| ||||| ||||| || || |||||||| |  ||||||||||||||||    
T  15760745 acttgatctttagaagaaatagggagaagtttgaacaaaccagcttgcaatttctctctgactatatgacagtcaatctcaagatgtttggtgcattcat 15760646  T
Q  339 gaaaaacagggttagc 354  Q
    | || ||||| |||||    
T  15760645 ggaagacaggattagc 15760630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 18550377 - 18550431
Alignment:
Q  135 atagccccccacaagctggaggttggtaaatatctaacaagcccagcttggataa 189  Q
    |||||| || ||||| |||||||||||||||||||| ||| |||| |||||||||    
T  18550377 atagcctcctacaagttggaggttggtaaatatctaccaatcccaacttggataa 18550431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 449 - 543
Target Start/End: Original strand, 27034327 - 27034421
Alignment:
Q  449 tgaagctcacaagttgctgaagctaaagcacgatactcaacttcagaagaggacctagaaacagttacttgtttctttgttctccatgaaatgag 543  Q
    ||||| |||||||| |||||||| | ||| | ||||||| |||||| ||| || ||||||||||||  ||||||||| |||||||||||||||||    
T  27034327 tgaagttcacaagtggctgaagcaagagccctatactcagcttcaggagatgatctagaaacagttgtttgtttcttggttctccatgaaatgag 27034421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 23683135 - 23683081
Alignment:
Q  135 atagccccccacaagctggaggttggtaaatatctaacaagcccagcttggataa 189  Q
    |||||| |||||||| |||||||||||||||||||| ||| |||| |||||||||    
T  23683135 atagcctcccacaagatggaggttggtaaatatctaccaatcccaacttggataa 23683081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 19913978 - 19914039
Alignment:
Q  140 cccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaa 201  Q
    |||||||||| |||||||||||| ||||| ||||| |||| ||||||||| | |||||||||    
T  19913978 cccccacaagttggaggttggtatatatccaacaaccccaacttggataacaaaagattaaa 19914039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 305 - 348
Target Start/End: Original strand, 28154382 - 28154425
Alignment:
Q  305 tggcaatcaatctccaagtgtttggtgcattcatgaaaaacagg 348  Q
    |||||||||||||| ||||||||||||| ||||||||| |||||    
T  28154382 tggcaatcaatctctaagtgtttggtgcgttcatgaaacacagg 28154425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 13486828 - 13486884
Alignment:
Q  142 cccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagatt 198  Q
    |||||||| |||||||||||| ||||| ||||  |||| |||||||| |||||||||    
T  13486828 cccacaagttggaggttggtagatatccaacatccccaacttggatagaagaagatt 13486884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 320 - 385
Target Start/End: Original strand, 21 - 86
Alignment:
Q  320 aagtgtttggtgcattcatgaaaaacagggttagctgctatatgtaaaccgctttgattgtcacag 385  Q
    |||||||| |||| |||||| || |||||||||||||||||||| | | |||||||||||||||||    
T  21 aagtgttttgtgcgttcatggaacacagggttagctgctatatgaagagcgctttgattgtcacag 86  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 140 - 385
Target Start/End: Complemental strand, 8854751 - 8854506
Alignment:
Q  140 cccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggttgaggatgaagagcttttgtgaagaaatcagcaa 239  Q
    |||||||||||||||   ||||||||||||||||   | |||||| |||||||||  || |||||||||||| |||||| ||| || ||||| || ||||    
T  8854751 cccccacaagctggaaaatggtaaatatctaacatttcgagcttgaataaaagaatgttgaagggttgaggaagaagaggtttagtaaagaagtctgcaa 8854652  T
Q  240 cctgttcttgagaagaaacaggaagaagcttgagtatgccagaatgtagtttttctctcactatgtggcaatcaatctccaagtgtttggtgcattcatg 339  Q
     ||| ||    ||||| |||||||||||||| |  ||| | |  ||||| |||||||| || | ||  ||||||||||| | ||| ||||| | ||||||    
T  8854651 gctggtcagaggaagagacaggaagaagcttcatgatgtctgcttgtagcttttctctaaccaagtaacaatcaatctcaaggtgcttggttctttcatg 8854552  T
Q  340 aaaaacagggttagctgctatatgtaaaccgctttgattgtcacag 385  Q
     |||||  |||| ||||| || |||||| | ||||| || ||||||    
T  8854551 gaaaactaggttggctgcaatgtgtaaagcactttggttatcacag 8854506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 384
Target Start/End: Original strand, 38845207 - 38845301
Alignment:
Q  290 ttttctctcactatgtggcaatcaatctccaagtgtttggtgcattcatgaaaaacagggttagctgctatatgtaaaccgctttgattgtcaca 384  Q
    |||||||| || ||||| ||||||||||| || || ||||| | ||||||||| || || ||||||| |||||||||| | |||||||| |||||    
T  38845207 ttttctctgacaatgtgacaatcaatctctaaatgcttggttctttcatgaaagactggattagctgatatatgtaaagcactttgattatcaca 38845301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 1528607 - 1528675
Alignment:
Q  139 ccccccacaagctggaggttggtaaatatctaacaagcccagcttggataaaagaagattaaagggttg 207  Q
    ||||||||||| |||||||||||| ||||| ||||| ||||  |||||||  | ||||||||| |||||    
T  1528607 ccccccacaaggtggaggttggtatatatccaacaatcccaaattggatagcaaaagattaaaaggttg 1528675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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