View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0151-INSERTION4 (Length: 647)
Name: NF0151-INSERTION4
Description: NF0151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0151-INSERTION4 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 575; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 8 - 647
Target Start/End: Original strand, 45676099 - 45676732
Alignment:
| Q |
8 |
aatttatccatctcaatctacaactcttcccacacctctgcaaacctgacatatatgataattttaattaattgtgcactcattatgtgtaacaatataa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45676099 |
aatttatccatctcaatctacaactcttcccacacctctgcaaacctgacatatatgataattttaattaattgtgcactcattatgtgtaacaatataa |
45676198 |
T |
|
| Q |
108 |
tatgatgacattaattaacatgatataattattggtatgtaagtaatttgtaccagctaattttggaactgagctccaacatccatgaccatgtttggtg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45676199 |
tatgatgacattaattaacatgatataattattggtatgtaagtaatttgtaccagctaattttggaactgagctccaacatccatgaccatgtttggtg |
45676298 |
T |
|
| Q |
208 |
atataattcaaaagcttttcatcttcttctggggaccaaagacctttacgaagcttctgcttgtagcaacaagaatgtcttcccatgtgcactttcttca |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45676299 |
atataattcaaaagcttttcatcttcttctggggaccaaagacctttacgaagcttctgcttgtagcaacaagaatgtcttcccatgtgcactttcttca |
45676398 |
T |
|
| Q |
308 |
attaacctctttcaaatg-nnnnnnnnaaactctttgtgtcagaaccaacgtggaaatattctggaggaagagttagctactagctagcataggaacttt |
406 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45676399 |
attaacctctatcaaatgtttttttttaaactctttgtgtcagaaccaacgtggaaatattctggaggaagagt-------tagctagcataggaacttt |
45676491 |
T |
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| Q |
407 |
gttatatgaattattatagtagtgaagaagggttagaacttagaagttaaaaaggttttgagaaataaaatggcaagttgatatatagaaagtgaaataa |
506 |
Q |
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| T |
45676492 |
gttatatgaattattatagtagtgaagaagggttagaacttagaagttaaaaatgttttgagaaataaaatggcaagttgatatatagaaagtgaaataa |
45676591 |
T |
|
| Q |
507 |
atagaagaaggaaactttggagaggaagaaaaagttatgattggacattgtcattttgaatttatatatctgactttctaattcacgagacattccacat |
606 |
Q |
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| T |
45676592 |
atagaagaaggaaactttggagaggaagaaaaagttatgattggacattgtcattttgaatttatatatctgactttctaattcacgagacattccacat |
45676691 |
T |
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| Q |
607 |
aatactactttgggtcctacctaccaaaggtgacacatcat |
647 |
Q |
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| T |
45676692 |
aatactactttgggtcctacctaccaaaggtgacacatcat |
45676732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 172 - 293
Target Start/End: Complemental strand, 45437858 - 45437737
Alignment:
| Q |
172 |
ggaactgagctccaacatccatgaccatgtttggtgatataattcaaaagcttttcatcttcttctggggaccaaagacctttacgaagcttctgcttgt |
271 |
Q |
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|||||||| ||||||||||||||||||| ||| || |||| ||||||||| |||||||| || || || ||||| |||||||| | |||||||||||||| |
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| T |
45437858 |
ggaactgaactccaacatccatgaccatatttagtaatatgattcaaaagtttttcatcctcctcaggtgaccatagacctttcctaagcttctgcttgt |
45437759 |
T |
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| Q |
272 |
agcaacaagaatgtcttcccat |
293 |
Q |
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| T |
45437758 |
agcaacaagagtgtcttcccat |
45437737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 154 - 296
Target Start/End: Complemental strand, 37962762 - 37962620
Alignment:
| Q |
154 |
tttgtaccagctaattttggaactgagctccaacatccatgaccatgtttggtgatataattcaaaagcttttcatcttcttctggggaccaaagacctt |
253 |
Q |
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|||||||| |||| ||| || ||||| |||||||||||||||||||||||||| || |||||||||||||| |||||||| || || |||||||| |||| |
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| T |
37962762 |
tttgtacctgctagtttggggactgaactccaacatccatgaccatgtttggtaatgtaattcaaaagcttctcatcttcctcaggagaccaaagtcctt |
37962663 |
T |
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| Q |
254 |
tacgaagcttctgcttgtagcaacaagaatgtcttcccatgtg |
296 |
Q |
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| | | |||||||||||||| ||||| |||||||||||||| |
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| T |
37962662 |
tccttaatttctgcttgtagcagcaagagtgtcttcccatgtg |
37962620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 175 - 293
Target Start/End: Original strand, 38269740 - 38269858
Alignment:
| Q |
175 |
actgagctccaacatccatgaccatgtttggtgatataattcaaaagcttttcatcttcttctggggaccaaagacctttacgaagcttctgcttgtagc |
274 |
Q |
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||||| ||||||||||||||||||| || || |||| ||| || ||||||||||||||||| ||||| |||||||| | ||||||||||||||| | |
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| T |
38269740 |
actgaactccaacatccatgaccatactttgttatatgcctcagtagtttttcatcttcttctggtgaccatagacctttcctaagcttctgcttgtaac |
38269839 |
T |
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| Q |
275 |
aacaagaatgtcttcccat |
293 |
Q |
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|||| || || |||||||| |
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| T |
38269840 |
aacatgagtgccttcccat |
38269858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 158 - 254
Target Start/End: Complemental strand, 51044226 - 51044130
Alignment:
| Q |
158 |
taccagctaattttggaactgagctccaacatccatgaccatgtttggtgatataattcaaaagcttttcatcttcttctggggaccaaagaccttt |
254 |
Q |
| |
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||||||||| ||| |||||||| |||||||||||| |||| |||| || ||||| |||||||| ||||||||||| |||||||| | |||||| |
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| T |
51044226 |
taccagctagtttaggaactgaactccaacatccaacaccaaacatggttatgtaattgaaaagcttatcatcttcttcaggggaccataaaccttt |
51044130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 37962904 - 37962857
Alignment:
| Q |
8 |
aatttatccatctcaatctacaactcttcccacacctctgcaaacctg |
55 |
Q |
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||||||||||||| || || ||||||||||||||||| |||||||||| |
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| T |
37962904 |
aatttatccatcttaacctgcaactcttcccacacctttgcaaacctg |
37962857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 51044505 - 51044460
Alignment:
| Q |
10 |
tttatccatctcaatctacaactcttcccacacctctgcaaacctg |
55 |
Q |
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| T |
51044505 |
tttatccatctcaatctacagctctttccacacctttgcaaccctg |
51044460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 2590882 - 2590846
Alignment:
| Q |
8 |
aatttatccatctcaatctacaactcttcccacacct |
44 |
Q |
| |
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|||||||||||||||| ||||||||||| |||||||| |
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| T |
2590882 |
aatttatccatctcaacctacaactcttaccacacct |
2590846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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