View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0151-INSERTION7 (Length: 501)

Name: NF0151-INSERTION7
Description: NF0151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0151-INSERTION7
NF0151-INSERTION7
[»] chr7 (3 HSPs)
chr7 (8-500)||(46442122-46442611)
chr7 (468-500)||(4058318-4058350)
chr7 (468-500)||(16805746-16805778)
[»] chr2 (1 HSPs)
chr2 (468-500)||(32761453-32761485)
[»] chr6 (1 HSPs)
chr6 (467-500)||(26713732-26713765)
[»] chr4 (1 HSPs)
chr4 (463-500)||(27485421-27485458)
[»] chr5 (1 HSPs)
chr5 (468-500)||(6491084-6491116)
[»] chr1 (5 HSPs)
chr1 (467-499)||(5584744-5584776)
chr1 (468-500)||(17556538-17556570)
chr1 (468-500)||(41432950-41432982)
chr1 (468-500)||(45565362-45565394)
chr1 (468-500)||(52073627-52073659)


Alignment Details
Target: chr7 (Bit Score: 455; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 8 - 500
Target Start/End: Original strand, 46442122 - 46442611
Alignment:
Q  8 gcgtatgcattctgtggtccaatttgagaactatttttgtcttcatgggatggctacagaggaaaagacacttgataatgataccgccgacccacccaaa 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||    
T  46442122 gcgtatgcattctgtggtccaatttgagaactatttttgtcttcatgggatggctacagaggtaaagacacttgataatgagacagccgacccacccaaa 46442221  T
Q  108 attattcaatatgaatgtcggaagatgggtgttatttttcgcattcaacaatatcttcatgaagaaggtttgatataataatcgatcaataatggacaat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46442222 attattcaatatgaatgtcggaagatgggtgttatttttcgcattcaacaatatcttcatgaagaaggtttgatataataatcgatcaataatggacaat 46442321  T
Q  208 ggaacaataatggacatgaagaaggtttgatataacttataagtatactggtcttgaatacgaaaatgagtacatttataacgataagctcatgctttta 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46442322 ggaacaataatggacatgaagaaggtttgatataacttataagtatactggtcttgaatacgaaaatgagtacatttataacgataagctcatgctttta 46442421  T
Q  308 ttaagacctgcaaacagtataatggacattatcttcaacatgactgagatgtgaaatagtggaagatctgctttatgtagttcaactattaaccttttgg 407  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  46442422 ttaagacctgcaaacagtataatggacattatctt---catgactgagatgtggaatagtggaagatctgctttatgtagttcaactattaaccttttgg 46442518  T
Q  408 gtaataacaaactatgattgaattaggagatctcgggggtaatgtttatgcataagagattaaggctttgattgcgagtttggaggggaaggg 500  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46442519 gtaataacaaactatgattgaattaggagatctcaggggtaatgtttatgcataagagattaaggctttggttgcgagtttggaggggaaggg 46442611  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 468 - 500
Target Start/End: Complemental strand, 4058350 - 4058318
Alignment:
Q  468 taaggctttgattgcgagtttggaggggaaggg 500  Q
    |||||||||| ||||||||||||||||||||||    
T  4058350 taaggctttgtttgcgagtttggaggggaaggg 4058318  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 468 - 500
Target Start/End: Complemental strand, 16805778 - 16805746
Alignment:
Q  468 taaggctttgattgcgagtttggaggggaaggg 500  Q
    |||||||||| ||||||||||||||||||||||    
T  16805778 taaggctttgtttgcgagtttggaggggaaggg 16805746  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 468 - 500
Target Start/End: Complemental strand, 32761485 - 32761453
Alignment:
Q  468 taaggctttgattgcgagtttggaggggaaggg 500  Q
    |||||||||||||||||||||||||||||||||    
T  32761485 taaggctttgattgcgagtttggaggggaaggg 32761453  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 500
Target Start/End: Original strand, 26713732 - 26713765
Alignment:
Q  467 ttaaggctttgattgcgagtttggaggggaaggg 500  Q
    ||||||||||| ||||||||||||||||||||||    
T  26713732 ttaaggctttgtttgcgagtttggaggggaaggg 26713765  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 500
Target Start/End: Complemental strand, 27485458 - 27485421
Alignment:
Q  463 gagattaaggctttgattgcgagtttggaggggaaggg 500  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  27485458 gagattaaggctttgtttgcgagtttggagtggaaggg 27485421  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 468 - 500
Target Start/End: Original strand, 6491084 - 6491116
Alignment:
Q  468 taaggctttgattgcgagtttggaggggaaggg 500  Q
    |||||||||| ||||||||||||||||||||||    
T  6491084 taaggctttgtttgcgagtttggaggggaaggg 6491116  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 467 - 499
Target Start/End: Complemental strand, 5584776 - 5584744
Alignment:
Q  467 ttaaggctttgattgcgagtttggaggggaagg 499  Q
    ||||||||||| |||||||||||||||||||||    
T  5584776 ttaaggctttgtttgcgagtttggaggggaagg 5584744  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 468 - 500
Target Start/End: Original strand, 17556538 - 17556570
Alignment:
Q  468 taaggctttgattgcgagtttggaggggaaggg 500  Q
    |||||||||| ||||||||||||||||||||||    
T  17556538 taaggctttgtttgcgagtttggaggggaaggg 17556570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 468 - 500
Target Start/End: Complemental strand, 41432982 - 41432950
Alignment:
Q  468 taaggctttgattgcgagtttggaggggaaggg 500  Q
    |||||||||| ||||||||||||||||||||||    
T  41432982 taaggctttgtttgcgagtttggaggggaaggg 41432950  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 468 - 500
Target Start/End: Complemental strand, 45565394 - 45565362
Alignment:
Q  468 taaggctttgattgcgagtttggaggggaaggg 500  Q
    |||||||||| ||||||||||||||||||||||    
T  45565394 taaggctttgtttgcgagtttggaggggaaggg 45565362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 468 - 500
Target Start/End: Complemental strand, 52073659 - 52073627
Alignment:
Q  468 taaggctttgattgcgagtttggaggggaaggg 500  Q
    |||||||||| ||||||||||||||||||||||    
T  52073659 taaggctttgtttgcgagtttggaggggaaggg 52073627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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