View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0151_1D_high_12 (Length: 383)
Name: NF0151_1D_high_12
Description: NF0151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0151_1D_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 133 - 317
Target Start/End: Original strand, 28324973 - 28325157
Alignment:
| Q |
133 |
acttttcacttctctctttgtccctgcaacaacaattatgcttccaattctcttctttcctttcccctttccaaaaccatgaaaaagcgcttattttcaa |
232 |
Q |
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| T |
28324973 |
acttttcacttctctctttgtccctgcaacaacaattatgcttccaattctcttctttcctttcccctttccaaaaccatgaaaaagcgcttattttcaa |
28325072 |
T |
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| Q |
233 |
atcactactcatatcgcaaattccgtagnnnnnnntggaccctttattcctcttctattcaaaaacaatctgcaactacttccaa |
317 |
Q |
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| T |
28325073 |
atcactactcatatcgcaaattccgtagaaaaaaatggaccctttattcctcttctattcaaaaacaatctgcaactacttccaa |
28325157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 42667660 - 42667705
Alignment:
| Q |
327 |
cgataacggttaacatgagtatcatcgctaaatcgccactgttcat |
372 |
Q |
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| T |
42667660 |
cgataacggttaacatgagtatcatcgctaaatcgccactgttcat |
42667705 |
T |
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